RchiOBHm_Chr2g0108641

Translocon-associated protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018580
Physical Location & Seq
Reverse (-)
20021280 .. 20023368
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGAGAGCTGACCTCAAGATCTCTTTGATTTCGTCAACGGCAAATGCTTTCAAGTCATGGGAAAGGATTGATGTAGGTGGCATTATATCCCACTCTTTTGAATTGGAGGCCAAAACGAAAGGAATGTTTAGTGGTGCAACAACTGTTATTACATTTCGCTTTCCCTCAAAGGCTGCTCTGCAGGAGAGTGTTGATGCTTTTATCAGCTATGTTGTGAAAAACAAAGGATTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
TRAP_beta

Protein Analysis

78

Amino Acids

8.54

Weight (kDa)

9.52

Isoelectric Point (pI)

18.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAP_beta PF05753 16 - 64 1e-09 Translocon-associated protein beta (TRAPB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 52, 101
AluBI AGCT 3 cut(s) 8, 207, 234
AluI AGCT 3 cut(s) 8, 207, 234
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 54
BfaI CTAG 1 cut(s) 235
BfmI CTRYAG 1 cut(s) 179
BglII AGATCT 1 cut(s) 18
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmsI GCATC 1 cut(s) 184
BplI GAGNNNNNCTC 1 cut(s) 29
BseXI GCAGC 1 cut(s) 160
BshFI GGCC 1 cut(s) 110
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 18
BspANI GGCC 1 cut(s) 110
BspMAI CTGCAG 1 cut(s) 183
BssMI GATC 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 145
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 1 cut(s) 110
CviAII CATG 1 cut(s) 57
CviJI RGCY 5 cut(s) 8, 110, 173, 207, 234
CviKI_1 RGCY 5 cut(s) 8, 110, 173, 207, 234
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
FaeI CATG 1 cut(s) 60
FaiI YATR 3 cut(s) 58, 86, 210
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 235
GluI GCNGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 1 cut(s) 60
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 137, 181
Hsp92II CATG 1 cut(s) 60
Kzo9I GATC 1 cut(s) 18
LpnPI CCDG 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 235
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MflI RGATCY 1 cut(s) 18
MluCI AATT 1 cut(s) 101
MnlI CCTC 3 cut(s) 23, 100, 175
NdeII GATC 1 cut(s) 18
NlaIII CATG 1 cut(s) 60
PkrI GCNGC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 18
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 1 cut(s) 18
SetI ASST 5 cut(s) 10, 15, 79, 209, 236
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 179
SgeI CNNG 4 cut(s) 28, 64, 69, 194
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 1 cut(s) 101
SspMI CTAG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 145
TasI AATT 1 cut(s) 101
TseI GCWGC 1 cut(s) 173
XspI CTAG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.