Rh2BG216600

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018580
Physical Location & Seq
Reverse (-)
20670589 .. 20696472
25884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG216600.1

Sequence Viewer

Length: 912 bp
ATGGCCACCACGGCCACAACCACCTCTCTTGCATCACTCTATAATCATTTCGTCCTTTACCTGTCTCTCTTGAAACTTGTCAGGCTGGATCTGGCATTGCTGGCGTACCCGAACATCAACCATTGTTGCAATTTTTTCAACCTTAGGGTTTCAAATTTGGGGCTTGTGCAGCAACCTATCAACTTTGTTTCCCTCGTTACAAAATTGGAGTTTATCTTGACACGCATACAGACTTTCCATGATGAGTTCAGTCACTGTGATTTGAATTTAGATTCGTGTATGATGATTGATGTAGGTGGCATTATATCCCACTCTTTTGAATTGGAGGCCAAAATGAGAGGAATGTTTAGTGGTGCAACAGCTGTTATTACATTTCGCTTTCCCTCAAAGGCTGCTCTGCAGGGATATGGGCGGCCACCAACCCCCGTCTGCGGTATCGATCTTCTGAGTAATCATGTAGGGAAACCCCGACTTCAGTGTGTAGAGGATCAGATTCATTTCTTCGACGGGTTTAGAGACTGGTTGCAGTGCGCCAAATTAAACTTCTTGCACCAGCTCTTTCAAGACAAAACACTGTCTCTTAGCTTATGTCCCAACGACCGGTGGAACCGGCACAAGGTTTCCCTGCCTAGATCTCACACCAAAGCAGAAAAGTTCCAAATTTCCCCAGCACTAGAGAACCCAGTGAAGGAAGCGAAGGAAGTAGCCAAGGAAACATCGCAATCCGCGATCTCTCCAGATGAGGTTTTAATTTGGGGTGTTCCACTGCTCAAGGATGACAGGAGTGACATGATTCTTCTCAAGTTTTTGAGGGCTCGGGATTTCAAGGTAAAAGATGTTTTGTTATGTTCCGAAACACGATCCACTGGAGGAAGCAGTTTGAGATCGATGCTCTTGTGGAGGAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

303

Amino Acids

34.35

Weight (kDa)

8.83

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 241 - 279 2.5e-07 CRAL/TRIO, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 728
AciI CCGC 3 cut(s) 412, 432, 726
AclWI GGATC 3 cut(s) 96, 495, 855
AcoI YGGCCR 3 cut(s) 3, 12, 413
AcsI RAATTY 3 cut(s) 154, 265, 660
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 4 cut(s) 431, 600, 616, 688
AgeI ACCGGT 1 cut(s) 600
AgsI TTSAA 7 cut(s) 73, 139, 153, 265, 320, 563, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 3 cut(s) 362, 556, 585
AluI AGCT 3 cut(s) 362, 556, 585
Alw26I GTCTC 3 cut(s) 69, 510, 582
AlwI GGATC 3 cut(s) 96, 495, 855
AlwNI CAGNNNCTG 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 816
AoxI GGCC 4 cut(s) 3, 12, 327, 413
ApeKI GCWGC 2 cut(s) 169, 392
ApoI RAATTY 3 cut(s) 154, 265, 660
AsiGI ACCGGT 1 cut(s) 600
AspLEI GCGC 1 cut(s) 533
AvaI CYCGRG 1 cut(s) 816
AxyI CCTNAGG 1 cut(s) 143
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 817
BbvI GCAGC 2 cut(s) 181, 379
BceAI ACGGC 1 cut(s) 27
BcoDI GTCTC 3 cut(s) 69, 510, 582
BfaI CTAG 3 cut(s) 630, 674, 910
BfmI CTRYAG 1 cut(s) 398
BglI GCCNNNNNGGC 1 cut(s) 11
BglII AGATCT 2 cut(s) 632, 906
BisI GCNGC 3 cut(s) 170, 393, 413
BlsI GCNGC 3 cut(s) 171, 394, 414
BmeT110I CYCGRG 1 cut(s) 816
BmiI GGNNCC 1 cut(s) 608
BmrI ACTGGG 1 cut(s) 677
BmsI GCATC 2 cut(s) 41, 879
BmuI ACTGGG 1 cut(s) 677
BpmI CTGGAG 2 cut(s) 720, 888
BpuEI CTTGAG 2 cut(s) 755, 785
Bsa29I ATCGAT 2 cut(s) 438, 887
BsaJI CCNNGG 2 cut(s) 9, 708
BsaWI WCCGGW 1 cut(s) 600
Bsc4I CCNNNNNNNGG 4 cut(s) 431, 600, 616, 688
Bse118I RCCGGY 2 cut(s) 600, 609
Bse1I ACTGG 3 cut(s) 524, 683, 871
Bse21I CCTNAGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 95
BseCI ATCGAT 2 cut(s) 438, 887
BseDI CCNNGG 2 cut(s) 9, 708
BseGI GGATG 1 cut(s) 781
BseLI CCNNNNNNNGG 4 cut(s) 431, 600, 616, 688
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 3 cut(s) 524, 683, 871
BseXI GCAGC 2 cut(s) 181, 379
BseYI CCCAGC 1 cut(s) 667
BsgI GTGCAG 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 728
Bsh1285I CGRYCG 1 cut(s) 601
BshFI GGCC 4 cut(s) 5, 14, 329, 415
BshTI ACCGGT 1 cut(s) 600
BshVI ATCGAT 2 cut(s) 438, 887
BsiEI CGRYCG 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 816
BsiSI CCGG 2 cut(s) 601, 610
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 4 cut(s) 431, 600, 616, 688
BsmAI GTCTC 3 cut(s) 69, 510, 582
BsmFI GGGAC 1 cut(s) 576
BsnI GGCC 4 cut(s) 5, 14, 329, 415
BsoBI CYCGRG 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 817
Bsp143I GATC 8 cut(s) 88, 439, 487, 632, 729, 860, 884, 906
BspACI CCGC 3 cut(s) 412, 432, 726
BspANI GGCC 4 cut(s) 5, 14, 329, 415
BspCNI CTCAG 1 cut(s) 438
BspDI ATCGAT 2 cut(s) 438, 887
BspFNI CGCG 1 cut(s) 728
BspLI GGNNCC 1 cut(s) 608
BspMAI CTGCAG 1 cut(s) 402
BspPI GGATC 3 cut(s) 96, 495, 855
BsrDI GCAATG 1 cut(s) 95
BsrFI RCCGGY 2 cut(s) 600, 609
BsrI ACTGG 3 cut(s) 524, 683, 871
BssAI RCCGGY 2 cut(s) 600, 609
BssECI CCNNGG 2 cut(s) 9, 708
BssMI GATC 8 cut(s) 88, 439, 487, 632, 729, 860, 884, 906
BssT1I CCWWGG 1 cut(s) 708
Bst4CI ACNGT 2 cut(s) 257, 576
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 143, 446, 581
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 781
BstFNI CGCG 1 cut(s) 728
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 8 cut(s) 91, 442, 490, 635, 732, 863, 887, 909
BstMAI GTCTC 3 cut(s) 69, 510, 582
BstMBI GATC 8 cut(s) 88, 439, 487, 632, 729, 860, 884, 906
BstMCI CGRYCG 1 cut(s) 601
BstMWI GCNNNNNNNGC 3 cut(s) 11, 101, 169
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 2 cut(s) 181, 379
BstX2I RGATCY 3 cut(s) 88, 632, 906
BstYI RGATCY 3 cut(s) 88, 632, 906
Bsu15I ATCGAT 2 cut(s) 438, 887
Bsu36I CCTNAGG 1 cut(s) 143
BsuRI GGCC 4 cut(s) 5, 14, 329, 415
BsuTUI ATCGAT 2 cut(s) 438, 887
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 702
BtsCI GGATG 1 cut(s) 781
BtsI GCAGTG 2 cut(s) 533, 764
BtsIMutI CAGTG 7 cut(s) 253, 482, 533, 572, 690, 764, 864
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 2 cut(s) 600, 609
ClaI ATCGAT 2 cut(s) 438, 887
Csp6I GTAC 1 cut(s) 106
CspAI ACCGGT 1 cut(s) 600
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 3 cut(s) 239, 455, 790
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 3 cut(s) 143, 446, 581
DpnI GATC 8 cut(s) 90, 441, 489, 634, 731, 862, 886, 908
DpnII GATC 8 cut(s) 88, 439, 487, 632, 729, 860, 884, 906
EaeI YGGCCR 3 cut(s) 3, 12, 413
Eco130I CCWWGG 1 cut(s) 708
Eco24I GRGCYC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 458
Eco81I CCTNAGG 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 816
EcoT14I CCWWGG 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 817
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 3 cut(s) 242, 458, 793
FaqI GGGAC 1 cut(s) 576
FatI CATG 3 cut(s) 238, 454, 789
Fnu4HI GCNGC 3 cut(s) 170, 393, 413
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 1 cut(s) 817
Fsp4HI GCNGC 3 cut(s) 170, 393, 413
FspBI CTAG 3 cut(s) 630, 674, 910
GlaI GCGC 1 cut(s) 532
GluI GCNGC 3 cut(s) 170, 393, 413
GsaI CCCAGC 1 cut(s) 671
GsuI CTGGAG 2 cut(s) 720, 888
HaeIII GGCC 4 cut(s) 5, 14, 329, 415
HapII CCGG 2 cut(s) 601, 610
HhaI GCGC 1 cut(s) 533
Hin1II CATG 3 cut(s) 242, 458, 793
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HinfI GANTC 3 cut(s) 272, 493, 793
HpaII CCGG 2 cut(s) 601, 610
Hpy188I TCNGA 3 cut(s) 447, 492, 853
Hpy188III TCNNGA 5 cut(s) 70, 217, 563, 737, 818
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 2 cut(s) 682, 691
HpyCH4III ACNGT 2 cut(s) 257, 576
HpyCH4V TGCA 7 cut(s) 32, 129, 169, 356, 400, 526, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 101, 169
HpyF3I CTNAG 3 cut(s) 143, 446, 581
Hsp92II CATG 3 cut(s) 242, 458, 793
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 8 cut(s) 88, 439, 487, 632, 729, 860, 884, 906
Lsp1109I GCAGC 2 cut(s) 181, 379
LweI GCATC 2 cut(s) 41, 879
MaeI CTAG 3 cut(s) 630, 674, 910
MaeIII GTNAC 3 cut(s) 196, 251, 785
MalI GATC 8 cut(s) 90, 441, 489, 634, 731, 862, 886, 908
MboI GATC 8 cut(s) 88, 439, 487, 632, 729, 860, 884, 906
MboII GAAGA 3 cut(s) 434, 493, 788
MflI RGATCY 3 cut(s) 88, 632, 906
MhlI GDGCHC 1 cut(s) 817
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 130, 154, 203, 265, 320, 536, 660, 750
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 539, 749
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 601, 610
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 3 cut(s) 11, 101, 169
NdeII GATC 8 cut(s) 88, 439, 487, 632, 729, 860, 884, 906
NlaIII CATG 3 cut(s) 242, 458, 793
NlaIV GGNNCC 1 cut(s) 608
NmuCI GTSAC 2 cut(s) 251, 785
PcsI WCGNNNNNNNCGW 1 cut(s) 725
PfeI GAWTC 3 cut(s) 272, 493, 793
PinAI ACCGGT 1 cut(s) 600
PkrI GCNGC 3 cut(s) 171, 394, 414
PspFI CCCAGC 1 cut(s) 667
PspN4I GGNNCC 1 cut(s) 608
PstI CTGCAG 1 cut(s) 402
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 3 cut(s) 88, 632, 906
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 2 cut(s) 539, 749
SatI GCNGC 3 cut(s) 170, 393, 413
Sau3AI GATC 8 cut(s) 88, 439, 487, 632, 729, 860, 884, 906
SduI GDGCHC 1 cut(s) 817
SfaNI GCATC 2 cut(s) 41, 879
SfcI CTRYAG 1 cut(s) 398
SfiI GGCCNNNNNGGCC 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 770, 800
SmoI CTYRAG 2 cut(s) 770, 800
Sse9I AATT 8 cut(s) 130, 154, 203, 265, 320, 536, 660, 750
SsiI CCGC 3 cut(s) 412, 432, 726
SspMI CTAG 3 cut(s) 630, 674, 910
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 257, 576
TaqI TCGA 3 cut(s) 438, 504, 887
TasI AATT 8 cut(s) 130, 154, 203, 265, 320, 536, 660, 750
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 3 cut(s) 272, 493, 793
Tru1I TTAA 2 cut(s) 539, 749
Tru9I TTAA 2 cut(s) 539, 749
TscAI CASTG 7 cut(s) 260, 482, 533, 579, 690, 771, 871
TseFI GTSAC 2 cut(s) 251, 785
TseI GCWGC 2 cut(s) 169, 392
Tsp45I GTSAC 2 cut(s) 251, 785
TspDTI ATGAA 1 cut(s) 485
TspRI CASTG 7 cut(s) 260, 482, 533, 579, 690, 771, 871
XapI RAATTY 3 cut(s) 154, 265, 660
XspI CTAG 3 cut(s) 630, 674, 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.