RchiOBHm_Chr4g0394111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018580
Physical Location & Seq
Reverse (-)
9752929 .. 9755160
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36664

Sequence Viewer

Length: 456 bp
ATGCATATGATGGATGCTCGCGATCAAAGCAATATCAGTGCGCTTAGATCGACCAACAAAAAAACAAAAGACCTGGCACAGATCGAGACCGCACTATGCCAATCCCCCCCCCCTCCCCCGGGGCTTCTCGCTAACTCTCTGCTCTTTCCGGCCTTCTCTTCTATGGCCACCACGACCACCTCTCTTGCATCACTGTATAATCATTTCATCCTTTACCTGTCTCTCTTGAAGCTTCTCAGGCTGGATCTGGCATTGCTGGCGTACCCGAACATCAACCATTGTCTCTTTTTTATTTCCTGCACTTTCACTCATATATGCACTCTCTCTTTGCCTAATTTCTTTTGTCAAATTTATACGCAGGTTGCAATTTTTTCAACCTTAGGGTTTCGAATTTGGGGCTTGTGCAGCAGCCTATCAAATTTGTTTCCCTCGTTACAAAATTGGAGTTTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.86

Weight (kDa)

8.6

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 3 cut(s) 348, 390, 418
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 118, 119
AgsI TTSAA 2 cut(s) 229, 375
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw26I GTCTC 3 cut(s) 80, 225, 287
AlwI GGATC 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 2 cut(s) 150, 165
ApeKI GCWGC 2 cut(s) 405, 408
ApoI RAATTY 3 cut(s) 348, 390, 418
AspLEI GCGC 1 cut(s) 43
AsuC2I CCSGG 2 cut(s) 119, 120
AsuII TTCGAA 1 cut(s) 388
AvaI CYCGRG 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 379
BalI TGGCCA 1 cut(s) 167
BbvI GCAGC 2 cut(s) 417, 420
BccI CCATC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 2 cut(s) 119, 120
BcoDI GTCTC 3 cut(s) 80, 225, 287
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 2 cut(s) 406, 409
BlsI GCNGC 2 cut(s) 407, 410
Bme1390I CCNGG 3 cut(s) 74, 119, 120
BmeT110I CYCGRG 1 cut(s) 118
BmrFI CCNGG 3 cut(s) 74, 119, 120
BmsI GCATC 2 cut(s) 4, 197
Bpu14I TTCGAA 1 cut(s) 388
BpuMI CCSGG 2 cut(s) 119, 120
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 117, 118, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 119
Bse21I CCTNAGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 3 cut(s) 117, 118, 119
BseGI GGATG 2 cut(s) 19, 207
BseLI CCNNNNNNNGG 2 cut(s) 118, 119
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 417, 420
BsgI GTGCAG 2 cut(s) 283, 424
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 152, 167
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 119, 149
BslI CCNNNNNNNGG 2 cut(s) 118, 119
BsmAI GTCTC 3 cut(s) 80, 225, 287
BsnI GGCC 2 cut(s) 152, 167
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 388
Bsp143I GATC 4 cut(s) 22, 47, 81, 244
Bsp68I TCGCGA 1 cut(s) 21
BspACI CCGC 1 cut(s) 90
BspANI GGCC 2 cut(s) 152, 167
BspCNI CTCAG 1 cut(s) 249
BspFNI CGCG 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 251
BssECI CCNNGG 3 cut(s) 117, 118, 119
BssMI GATC 4 cut(s) 22, 47, 81, 244
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 19, 258
BstDEI CTNAG 3 cut(s) 44, 236, 379
BstF5I GGATG 2 cut(s) 19, 207
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 4 cut(s) 25, 50, 84, 247
BstMAI GTCTC 3 cut(s) 80, 225, 287
BstMBI GATC 4 cut(s) 22, 47, 81, 244
BstMWI GCNNNNNNNGC 4 cut(s) 27, 238, 257, 405
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 72, 117, 118
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 417, 420
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu36I CCTNAGG 1 cut(s) 379
BsuRI GGCC 2 cut(s) 152, 167
BtsCI GGATG 2 cut(s) 19, 207
BtsIMutI CAGTG 2 cut(s) 43, 191
BtuMI TCGCGA 1 cut(s) 21
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 19, 258
CfoI GCGC 1 cut(s) 43
Cfr9I CCCGGG 1 cut(s) 118
Csp6I GTAC 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviJI RGCY 7 cut(s) 124, 152, 167, 232, 241, 399, 411
CviKI_1 RGCY 7 cut(s) 124, 152, 167, 232, 241, 399, 411
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 3 cut(s) 44, 236, 379
DpnI GATC 4 cut(s) 24, 49, 83, 246
DpnII GATC 4 cut(s) 22, 47, 81, 244
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 80
Eco81I CCTNAGG 1 cut(s) 379
Eco88I CYCGRG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 9 cut(s) 6, 8, 97, 164, 198, 312, 314, 316, 354
FauNDI CATATG 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 406, 409
FokI GGATG 2 cut(s) 26, 194
Fsp4HI GCNGC 2 cut(s) 406, 409
GlaI GCGC 1 cut(s) 42
GluI GCNGC 2 cut(s) 406, 409
HaeIII GGCC 2 cut(s) 152, 167
HapII CCGG 2 cut(s) 119, 149
HhaI GCGC 1 cut(s) 43
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 230
HpaII CCGG 2 cut(s) 119, 149
Hpy188III TCNNGA 4 cut(s) 20, 85, 226, 453
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 6 cut(s) 4, 188, 300, 318, 365, 405
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 238, 257, 405
HpyF3I CTNAG 3 cut(s) 44, 236, 379
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 4 cut(s) 22, 47, 81, 244
Lsp1109I GCAGC 2 cut(s) 417, 420
LweI GCATC 2 cut(s) 4, 197
MaeIII GTNAC 1 cut(s) 432
MalI GATC 4 cut(s) 24, 49, 83, 246
MboI GATC 4 cut(s) 22, 47, 81, 244
MboII GAAGA 1 cut(s) 150
MflI RGATCY 1 cut(s) 244
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 6 cut(s) 334, 348, 366, 390, 418, 439
MluNI TGGCCA 1 cut(s) 167
MnlI CCTC 3 cut(s) 123, 190, 439
Mox20I TGGCCA 1 cut(s) 167
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 2 cut(s) 119, 149
MspR9I CCNGG 3 cut(s) 74, 119, 120
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 4 cut(s) 27, 238, 257, 405
NciI CCSGG 2 cut(s) 119, 120
NdeI CATATG 1 cut(s) 6
NdeII GATC 4 cut(s) 22, 47, 81, 244
NruI TCGCGA 1 cut(s) 21
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 388
PkrI GCNGC 2 cut(s) 407, 410
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PsuI RGATCY 1 cut(s) 244
RruI TCGCGA 1 cut(s) 21
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SatI GCNGC 2 cut(s) 406, 409
Sau3AI GATC 4 cut(s) 22, 47, 81, 244
ScrFI CCNGG 3 cut(s) 74, 119, 120
SetI ASST 6 cut(s) 75, 182, 219, 234, 363, 380
SfaNI GCATC 2 cut(s) 4, 197
SfuI TTCGAA 1 cut(s) 388
SmaI CCCGGG 1 cut(s) 120
Sse9I AATT 6 cut(s) 334, 348, 366, 390, 418, 439
SsiI CCGC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 72, 117, 118
TaaI ACNGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 50, 84, 388
TasI AATT 6 cut(s) 334, 348, 366, 390, 418, 439
TscAI CASTG 2 cut(s) 43, 198
TseI GCWGC 2 cut(s) 405, 408
TspDTI ATGAA 1 cut(s) 196
TspMI CCCGGG 1 cut(s) 118
TspRI CASTG 2 cut(s) 43, 198
XapI RAATTY 3 cut(s) 348, 390, 418
XmaI CCCGGG 1 cut(s) 118
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.