Rroxscaffold_5G00339900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018580
Physical Location & Seq
Forward (+)
8308422 .. 8321522
13101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339900.1

Sequence Viewer

Length: 459 bp
ATGTTTCCCCTGCCTCACCTTAGAATCGCGCTCTATGACGATAGGTCGATAGCTCGCGCCTCGCTAGACTCGACGATGAGGAGTACATCCGTCGCCGTCGCTTTCGGACTCAAAACCTTAGATTTGAAACTACCAGACGACATCTTTATTGGAGAGAAGAAAAAGAAAGAACATGCAGGGGTTTCGAATTTGGAGCTTGTGCAGCAACCTATCAAATTTGTTTCGCTCGTTACAAAATTGGATTTTATCTTGACAAGCATGCAGACTTTCCATGACGAGTTCGATCACCGTGATTTGAATTTAGATTCGGATTCGTTAGGGAAAGCATGTTGCCTGTTTGATCAGAATATGGAAGGACCAGTCACATATACAATTGCTAAAAGGACACAAAATAATGCACCTGAAGTAGATGATGGTTGTGACAAACAGAAAGCACAGAGAAAGCTGAGAAGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.12

Weight (kDa)

6.41

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 29, 57
AcsI RAATTY 3 cut(s) 187, 215, 298
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 1 cut(s) 85
AgsI TTSAA 2 cut(s) 127, 298
AhdI GACNNNNNGTC 1 cut(s) 43
AluBI AGCT 4 cut(s) 53, 196, 445, 453
AluI AGCT 4 cut(s) 53, 196, 445, 453
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 3 cut(s) 187, 215, 298
AspLEI GCGC 2 cut(s) 31, 59
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 2 cut(s) 8, 278
AsuII TTCGAA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 80
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BclI TGATCA 1 cut(s) 340
BfaI CTAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 356
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 221
Bsh1236I CGCG 2 cut(s) 29, 57
Bsp119I TTCGAA 1 cut(s) 185
Bsp143I GATC 2 cut(s) 283, 340
BspCNI CTCAG 1 cut(s) 438
BspFNI CGCG 2 cut(s) 29, 57
BspT104I TTCGAA 1 cut(s) 185
BsrI ACTGG 1 cut(s) 359
BssMI GATC 2 cut(s) 283, 340
Bst4CI ACNGT 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 55, 260
BstDEI CTNAG 3 cut(s) 20, 118, 446
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 29, 57
BstHHI GCGC 2 cut(s) 31, 59
BstKTI GATC 2 cut(s) 286, 343
BstMBI GATC 2 cut(s) 283, 340
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNSI RCATGY 3 cut(s) 176, 262, 330
BstUI CGCG 2 cut(s) 29, 57
BstV1I GCAGC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 55, 260
CfoI GCGC 2 cut(s) 31, 59
Cfr13I GGNCC 1 cut(s) 356
Csp6I GTAC 1 cut(s) 84
CviAII CATG 4 cut(s) 173, 259, 272, 327
CviJI RGCY 4 cut(s) 53, 196, 445, 453
CviKI_1 RGCY 4 cut(s) 53, 196, 445, 453
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 3 cut(s) 20, 118, 446
DpnI GATC 2 cut(s) 285, 342
DpnII GATC 2 cut(s) 283, 340
DriI GACNNNNNGTC 1 cut(s) 43
Eam1105I GACNNNNNGTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 423
FaeI CATG 4 cut(s) 176, 262, 275, 330
FaiI YATR 9 cut(s) 36, 174, 260, 273, 328, 350, 367, 369, 457
FatI CATG 4 cut(s) 172, 258, 271, 326
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 65
GlaI GCGC 2 cut(s) 30, 58
GluI GCNGC 1 cut(s) 203
HhaI GCGC 2 cut(s) 31, 59
Hin1II CATG 4 cut(s) 176, 262, 275, 330
Hin6I GCGC 2 cut(s) 29, 57
HinP1I GCGC 2 cut(s) 29, 57
HinfI GANTC 5 cut(s) 24, 68, 108, 305, 311
HphI GGTGA 2 cut(s) 8, 278
Hpy188I TCNGA 3 cut(s) 107, 310, 345
Hpy188III TCNNGA 1 cut(s) 250
Hpy99I CGWCG 3 cut(s) 76, 95, 101
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 4 cut(s) 176, 202, 262, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 3 cut(s) 20, 118, 446
Hsp92II CATG 4 cut(s) 176, 262, 275, 330
HspAI GCGC 2 cut(s) 29, 57
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 283, 340
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 6 cut(s) 23, 147, 162, 347, 372, 414
Lsp1109I GCAGC 1 cut(s) 214
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 229, 361, 419
MalI GATC 2 cut(s) 285, 342
MboI GATC 2 cut(s) 283, 340
MboII GAAGA 1 cut(s) 169
MfeI CAATTG 1 cut(s) 372
MluCI AATT 5 cut(s) 187, 215, 236, 298, 372
MlyI GAGTC 2 cut(s) 62, 102
MnlI CCTC 3 cut(s) 24, 70, 72
MunI CAATTG 1 cut(s) 372
MvnI CGCG 2 cut(s) 29, 57
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 2 cut(s) 283, 340
NlaIII CATG 4 cut(s) 176, 262, 275, 330
NmuCI GTSAC 2 cut(s) 361, 419
NspI RCATGY 3 cut(s) 176, 262, 330
NspV TTCGAA 1 cut(s) 185
PaeI GCATGC 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PfeI GAWTC 3 cut(s) 24, 305, 311
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 2 cut(s) 62, 102
PpsI GAGTC 2 cut(s) 62, 102
PspPI GGNCC 1 cut(s) 356
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 283, 340
Sau96I GGNCC 1 cut(s) 356
SchI GAGTC 2 cut(s) 62, 102
SetI ASST 9 cut(s) 21, 47, 55, 119, 198, 211, 403, 447, 455
SfuI TTCGAA 1 cut(s) 185
SinI GGWCC 1 cut(s) 356
SphI GCATGC 1 cut(s) 262
Sse9I AATT 5 cut(s) 187, 215, 236, 298, 372
SspMI CTAG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 4 cut(s) 47, 71, 185, 282
TasI AATT 5 cut(s) 187, 215, 236, 298, 372
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 3 cut(s) 24, 305, 311
TseFI GTSAC 2 cut(s) 361, 419
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 2 cut(s) 361, 419
TspGWI ACGGA 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 356
XapI RAATTY 3 cut(s) 187, 215, 298
XceI RCATGY 3 cut(s) 176, 262, 330
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.