RchiOBHm_Chr2g0132071

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019326
Physical Location & Seq
Reverse (-)
48448751 .. 48450096
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGAAGGCTTTTCTCTGTTCGATTTCTCCTCTCTCTCTCTCTCTCCTCTTCCTGGGTATCGCTGATCTAACCTCCTTCGTTTGTGTTTTGCACTTCAACATCGCCAACCTCACCACAGGTTGCCAGAAGAAGTTGGAGATCGATGACGACCATAAACTGAGTGCCTCTTCTGACAAGAGGATCTCACAGGAATTGAGTGGAGATGCCTTTGGAGAGGAATTTAAGGGATATGTCTTTAAGATTATGGGAGGCTGTGTGACAAGCGAGGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

91

Amino Acids

9.83

Weight (kDa)

5.16

Isoelectric Point (pI)

24.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 31 - 85 1.1e-13 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019326)

Species Orthologous Gene IDs
pyrus_communis pycom12g21460
rosa_chinensis RchiOBHm_Chr2g0132071
rosa_multiflora Rmu_sc0008453.1_g000012 Rmu_sc0014425.1_g000010
rosa_rugosa Rorug02G0638200 Rorug05G0316800
rosa_samantha Rh3CG318500 Rh4AG228200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 51
AlwI GGATC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 53
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 149
BseRI GAGGAG 2 cut(s) 18, 35
BshVI ATCGAT 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 52
Bsp143I GATC 3 cut(s) 64, 138, 180
BspCNI CTCAG 1 cut(s) 150
BspDI ATCGAT 1 cut(s) 141
BspHI TCATGA 1 cut(s) 272
BspPI GGATC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 3 cut(s) 64, 138, 180
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 2 cut(s) 53, 172
BstDEI CTNAG 1 cut(s) 158
BstKTI GATC 3 cut(s) 67, 141, 183
BstMBI GATC 3 cut(s) 64, 138, 180
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 141
BsuTUI ATCGAT 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 85
CciI TCATGA 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 141
CviAII CATG 1 cut(s) 273
CviJI RGCY 2 cut(s) 8, 252
CviKI_1 RGCY 2 cut(s) 8, 252
DdeI CTNAG 1 cut(s) 158
DpnI GATC 3 cut(s) 66, 140, 182
DpnII GATC 3 cut(s) 64, 138, 180
Eam1104I CTCTTC 2 cut(s) 53, 172
EarI CTCTTC 2 cut(s) 53, 172
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 276
FaiI YATR 4 cut(s) 153, 231, 245, 274
FatI CATG 1 cut(s) 272
Hin1II CATG 1 cut(s) 276
HphI GGTGA 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 1 cut(s) 276
Kzo9I GATC 3 cut(s) 64, 138, 180
LpnPI CCDG 5 cut(s) 38, 65, 102, 137, 173
LweI GCATC 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 256
MalI GATC 3 cut(s) 66, 140, 182
MboI GATC 3 cut(s) 64, 138, 180
MboII GAAGA 3 cut(s) 40, 139, 159
MflI RGATCY 1 cut(s) 180
MluCI AATT 2 cut(s) 191, 218
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 9 cut(s) 39, 56, 82, 119, 171, 175, 208, 242, 259
MseI TTAA 2 cut(s) 222, 237
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
NdeII GATC 3 cut(s) 64, 138, 180
NlaIII CATG 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 256
PagI TCATGA 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 180
SaqAI TTAA 2 cut(s) 222, 237
Sau3AI GATC 3 cut(s) 64, 138, 180
ScrFI CCNGG 1 cut(s) 53
SetI ASST 3 cut(s) 74, 111, 121
SfaNI GCATC 1 cut(s) 193
SgeI CNNG 6 cut(s) 64, 65, 129, 136, 187, 200
Sse9I AATT 2 cut(s) 191, 218
StyD4I CCNGG 1 cut(s) 51
TaqI TCGA 2 cut(s) 20, 141
TasI AATT 2 cut(s) 191, 218
Tru1I TTAA 2 cut(s) 222, 237
Tru9I TTAA 2 cut(s) 222, 237
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 17, 261
XapI RAATTY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.