RchiOBHm_Chr2g0132281

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016619
Physical Location & Seq
Reverse (-)
48741231 .. 48743859
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1341 bp
ATGGCCGATGCAAAACCTATTTTGCAGTTTCTTCTGTTTCTGTTTCTTGTTTGCCTCGGTACTTATGGAAATGGGGTTCAGGGTTTGAGAGAGAAGAACAAGGTGCTCGACCTGCAAGAGTTTCGTTTGAAGCAGCATGGTGGAACTGGAACCAGAACTAGTGCTTGCCTCTCCCAGAAATCAAGAAAGGAAAAAGGTGCGACTATATTGGAAATAAAACACAGAGATTATTGCTCAGCTGGAAAGATCGTTGACTGGAACAAAAAGCAACAGAAACGTTTAATGTTGGATGATCTTCATGTTCGGTTTCTGCAATCCCAATTCCGATATAGGATTTCTGGCATTACTACAAAAGACGATGTATCAGAAGCTCAAATTCCATTAACTTCTGGGGTAAGGCTAGAAACACTAAACTACATCGTAACTGTGGAATTGGGTGGTAGAAATATGACGGTGATTGTAGACACAGGCAGTGACTTGACTTGGGTTCAATGCCAACCTTGTAAATTGTGTTACAAGCAACAAGAACCTCTCTTCAATCCTTCTCAATCTAAATCATACCAATCAGTTTTATGCAACTCAACAAATTGTCAGGCCCTCCAGTTTGCTACTGGGAATTCAGGAGTGTGTGGGAGGAATCCTCAGACCTGTAGCTATGTTGTGAACTATGGTGATGGCTCCTACACTCGGGGTGAGTTTGCTCGAGACCAACTCTACCTTGGAACTACACCAGTGGACAATTTTGTGTTTGGTTGTGGAAGAAACAATAAGGGTCTGTTTGGGGGAGCTTCAGGTTTGATGGGTTTGGGAAGGAGTGATAGTCTCTCAGTGGTTTCTCAAACATCTGGCTTATTTGGTGGGGTTTTCTCTTACTGTTTACCTTCAACAGAAGTCGCAGATTCTGGTTCATTAGTTATGGGTGGGGATTCTTCAATTTACAAGAATTCAACTCCTATTTCTTACACTAGAATGGTTGCAAATCCACAGCTGTCCACCTTCTATTTTCTCAATCTCACCGGTATAAGTATTGGGGGAGTGGCTTTACAAGTTCCTAGTTTTGCAAGCGGTGGGATTCTGATCGATTCTGGGACAGTTATTTCAAGGCTGCCCCCTTCAGTTTACAAGACTATCAAGGCAGAGTTTCTGAAACAGTTTTCCGGGTACCCCCCAGCACCGGGTTTTTCAATTTTGGACACTTGCTTCAACCTTAGTGTATATCAAGAGGTGAACATTCCTACAATGAAGATGCATTTTGAGGGAGATGCAGAGCTGACTGTCGATGTAACCGGAATTTTCTACATGGTGAAGACTGATGCATCCCAGATCTGTTTGAATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

446

Amino Acids

48.73

Weight (kDa)

8.55

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 139 - 308 1.4e-48 Xylanase inhibitor N-terminal
Asp PF00026 139 - 444 1e-16 Eukaryotic aspartyl protease
TAXi_C PF14541 334 - 445 5.8e-19 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016619)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79720
fragaria_vesca FvH4_6g28220
malus_domestica MD09G1228000.v1.1
prunus_persica Prupe.3G103900_v2.0.a1
pyrus_communis pycom09g14720
rosa_chinensis RchiOBHm_Chr2g0132281
rosa_laevigata RLG00000019243
rosa_roxburghii Rroxscaffold_2G00112200
rosa_rugosa Rorug02G0303400
rosa_samantha Rh2AG356400 Rh2BG362800 Rh2CG339900 Rh2DG379700
rosa_wichuraiana Rw2G028980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
Acc65I GGTACC 1 cut(s) 1161
AccB1I GGYRCC 1 cut(s) 1161
AccI GTMKAC 1 cut(s) 462
AciI CCGC 1 cut(s) 1065
AclI AACGTT 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 375, 616, 943, 1290
AcuI CTGAAG 2 cut(s) 774, 1098
AfaI GTAC 2 cut(s) 61, 1163
AfiI CCNNNNNNNGG 3 cut(s) 687, 1174, 1175
AgeI ACCGGT 1 cut(s) 1016
AhlI ACTAGT 1 cut(s) 158
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
AluBI AGCT 6 cut(s) 239, 371, 654, 788, 988, 1270
AluI AGCT 6 cut(s) 239, 371, 654, 788, 988, 1270
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 699, 827
AlwNI CAGNNNCTG 1 cut(s) 902
Ama87I CYCGRG 2 cut(s) 687, 702
AoxI GGCC 2 cut(s) 3, 594
ApeKI GCWGC 2 cut(s) 133, 1105
ApoI RAATTY 4 cut(s) 375, 616, 943, 1290
AsiGI ACCGGT 1 cut(s) 1016
Asp718I GGTACC 1 cut(s) 1161
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 2 cut(s) 1159, 1176
AsuHPI GGTGA 6 cut(s) 466, 683, 704, 1006, 1237, 1315
AvaI CYCGRG 2 cut(s) 687, 702
BanI GGYRCC 1 cut(s) 1161
BbsI GAAGAC 1 cut(s) 1313
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 145, 1092
BccI CCATC 2 cut(s) 668, 793
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BcnI CCSGG 2 cut(s) 1159, 1176
BcoDI GTCTC 2 cut(s) 699, 827
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 4 cut(s) 159, 401, 966, 1053
BfmI CTRYAG 1 cut(s) 649
BfuAI ACCTGC 1 cut(s) 120
BglII AGATCT 1 cut(s) 1323
BisI GCNGC 2 cut(s) 134, 1106
BlpI GCTNAGC 1 cut(s) 235
BlsI GCNGC 2 cut(s) 135, 1107
Bme1390I CCNGG 2 cut(s) 1159, 1176
BmeT110I CYCGRG 2 cut(s) 687, 702
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 3 cut(s) 151, 679, 1163
BmrFI CCNGG 2 cut(s) 1159, 1176
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 4 cut(s) 1236, 1252, 1303, 1325
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 1313
BplI GAGNNNNNCTC 4 cut(s) 625, 657, 696, 728
BpmI CTGGAG 1 cut(s) 584
Bpu1102I GCTNAGC 1 cut(s) 235
BpuMI CCSGG 2 cut(s) 1159, 1176
Bsa29I ATCGAT 1 cut(s) 1080
BsaBI GATNNNNATC 1 cut(s) 1076
BsaI GGTCTC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 55, 718
BsaWI WCCGGW 2 cut(s) 1016, 1286
BsaXI ACNNNNNCTCC 2 cut(s) 805, 835
Bsc4I CCNNNNNNNGG 3 cut(s) 687, 1174, 1175
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 5 cut(s) 151, 260, 601, 616, 731
Bse8I GATNNNNATC 1 cut(s) 1076
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 2 cut(s) 55, 718
BseGI GGATG 2 cut(s) 295, 1316
BseJI GATNNNNATC 1 cut(s) 1076
BseLI CCNNNNNNNGG 3 cut(s) 687, 1174, 1175
BseMII CTCAG 3 cut(s) 249, 656, 840
BseNI ACTGG 5 cut(s) 151, 260, 601, 616, 731
BseXI GCAGC 2 cut(s) 145, 1092
BseYI CCCAGC 1 cut(s) 1168
BshFI GGCC 2 cut(s) 5, 596
BshNI GGYRCC 1 cut(s) 1161
BshTI ACCGGT 1 cut(s) 1016
BshVI ATCGAT 1 cut(s) 1080
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 2 cut(s) 687, 702
BsiSI CCGG 4 cut(s) 1017, 1158, 1175, 1287
BslFI GGGAC 1 cut(s) 1102
BslI CCNNNNNNNGG 3 cut(s) 687, 1174, 1175
BsmAI GTCTC 2 cut(s) 699, 827
BsmFI GGGAC 1 cut(s) 1102
BsnI GGCC 2 cut(s) 5, 596
Bso31I GGTCTC 1 cut(s) 699
BsoBI CYCGRG 2 cut(s) 687, 702
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 4 cut(s) 246, 292, 1077, 1323
Bsp1720I GCTNAGC 1 cut(s) 235
BspACI CCGC 1 cut(s) 1065
BspANI GGCC 2 cut(s) 5, 596
BspCNI CTCAG 3 cut(s) 248, 655, 839
BspDI ATCGAT 1 cut(s) 1080
BspLI GGNNCC 3 cut(s) 151, 679, 1163
BspMI ACCTGC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 1161
BspTNI GGTCTC 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 1016
BsrI ACTGG 5 cut(s) 151, 260, 601, 616, 731
BssAI RCCGGY 1 cut(s) 1016
BssECI CCNNGG 2 cut(s) 55, 718
BssMI GATC 4 cut(s) 246, 292, 1077, 1323
BssT1I CCWWGG 1 cut(s) 718
Bst4CI ACNGT 6 cut(s) 427, 454, 875, 1093, 1152, 1276
Bst6I CTCTTC 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 166, 1063
BstDEI CTNAG 4 cut(s) 235, 642, 826, 1208
BstF5I GGATG 2 cut(s) 295, 1316
BstKTI GATC 4 cut(s) 249, 295, 1080, 1326
BstMAI GTCTC 2 cut(s) 699, 827
BstMBI GATC 4 cut(s) 246, 292, 1077, 1323
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 1157, 1174
BstSFI CTRYAG 1 cut(s) 649
BstV1I GCAGC 2 cut(s) 145, 1092
BstV2I GAAGAC 1 cut(s) 1313
BstX2I RGATCY 1 cut(s) 1323
BstYI RGATCY 1 cut(s) 1323
Bsu15I ATCGAT 1 cut(s) 1080
BsuRI GGCC 2 cut(s) 5, 596
BsuTUI ATCGAT 1 cut(s) 1080
BtsCI GGATG 2 cut(s) 295, 1316
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 3 cut(s) 478, 738, 834
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 166, 1063
CaiI CAGNNNCTG 1 cut(s) 902
Cfr10I RCCGGY 1 cut(s) 1016
Cfr13I GGNCC 1 cut(s) 595
ClaI ATCGAT 1 cut(s) 1080
Csp6I GTAC 2 cut(s) 60, 1162
CspAI ACCGGT 1 cut(s) 1016
CviAII CATG 3 cut(s) 137, 299, 1300
CviQI GTAC 2 cut(s) 60, 1162
DdeI CTNAG 4 cut(s) 235, 642, 826, 1208
DpnI GATC 4 cut(s) 248, 294, 1079, 1325
DpnII GATC 4 cut(s) 246, 292, 1077, 1323
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 774, 1098
Eco88I CYCGRG 2 cut(s) 687, 702
EcoO109I RGGNCCY 1 cut(s) 595
EcoRI GAATTC 2 cut(s) 616, 943
EcoT14I CCWWGG 1 cut(s) 718
EcoT22I ATGCAT 2 cut(s) 1251, 1318
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 3 cut(s) 140, 302, 1303
FaqI GGGAC 1 cut(s) 1102
FatI CATG 3 cut(s) 136, 298, 1299
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 134, 1106
FokI GGATG 2 cut(s) 302, 1303
Fsp4HI GCNGC 2 cut(s) 134, 1106
FspBI CTAG 4 cut(s) 159, 401, 966, 1053
GluI GCNGC 2 cut(s) 134, 1106
GsaI CCCAGC 1 cut(s) 1172
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 2 cut(s) 5, 596
HapII CCGG 4 cut(s) 1017, 1158, 1175, 1287
Hin1II CATG 3 cut(s) 140, 302, 1303
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 5 cut(s) 637, 899, 926, 1072, 1082
HpaII CCGG 4 cut(s) 1017, 1158, 1175, 1287
HphI GGTGA 6 cut(s) 466, 683, 704, 1006, 1237, 1315
Hpy166II GTNNAC 8 cut(s) 253, 463, 664, 736, 878, 993, 1120, 1228
Hpy188I TCNGA 5 cut(s) 326, 367, 645, 1077, 1146
Hpy188III TCNNGA 4 cut(s) 183, 621, 704, 1220
Hpy8I GTNNAC 8 cut(s) 253, 463, 664, 736, 878, 993, 1120, 1228
HpyAV CCTTC 5 cut(s) 552, 804, 891, 1006, 1122
HpyCH4III ACNGT 6 cut(s) 427, 454, 875, 1093, 1152, 1276
HpyCH4IV ACGT 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 4 cut(s) 235, 642, 826, 1208
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 3 cut(s) 140, 302, 1303
KpnI GGTACC 1 cut(s) 1165
Kzo9I GATC 4 cut(s) 246, 292, 1077, 1323
LmnI GCTCC 2 cut(s) 683, 785
Lsp1109I GCAGC 2 cut(s) 145, 1092
LweI GCATC 4 cut(s) 1236, 1252, 1303, 1325
MaeI CTAG 4 cut(s) 159, 401, 966, 1053
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 4 cut(s) 421, 473, 512, 1282
MalI GATC 4 cut(s) 248, 294, 1079, 1325
MboI GATC 4 cut(s) 246, 292, 1077, 1323
MboII GAAGA 8 cut(s) 23, 106, 287, 526, 771, 921, 1255, 1318
MflI RGATCY 1 cut(s) 1323
MhlI GDGCHC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 8 cut(s) 65, 179, 540, 608, 627, 651, 1216, 1249
Mph1103I ATGCAT 2 cut(s) 1251, 1318
MseI TTAA 2 cut(s) 281, 383
MslI CAYNNNNRTG 1 cut(s) 968
MspA1I CMGCKG 2 cut(s) 239, 988
MspI CCGG 4 cut(s) 1017, 1158, 1175, 1287
MspR9I CCNGG 2 cut(s) 1159, 1176
MwoI GCNNNNNNNGC 1 cut(s) 112
NciI CCSGG 2 cut(s) 1159, 1176
NdeII GATC 4 cut(s) 246, 292, 1077, 1323
NlaIII CATG 3 cut(s) 140, 302, 1303
NlaIV GGNNCC 3 cut(s) 151, 679, 1163
NmuCI GTSAC 1 cut(s) 473
NsiI ATGCAT 2 cut(s) 1251, 1318
PaeR7I CTCGAG 1 cut(s) 702
PfeI GAWTC 5 cut(s) 637, 899, 926, 1072, 1082
PinAI ACCGGT 1 cut(s) 1016
PkrI GCNGC 2 cut(s) 135, 1107
Psp1406I AACGTT 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 1168
PspN4I GGNNCC 3 cut(s) 151, 679, 1163
PspPI GGNCC 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 902
PsuI RGATCY 1 cut(s) 1323
PvuII CAGCTG 2 cut(s) 239, 988
RsaI GTAC 2 cut(s) 61, 1163
RsaNI GTAC 2 cut(s) 60, 1162
RseI CAYNNNNRTG 1 cut(s) 968
SaqAI TTAA 2 cut(s) 281, 383
SatI GCNGC 2 cut(s) 134, 1106
Sau3AI GATC 4 cut(s) 246, 292, 1077, 1323
Sau96I GGNCC 1 cut(s) 595
ScrFI CCNGG 2 cut(s) 1159, 1176
SduI GDGCHC 1 cut(s) 108
SfaNI GCATC 4 cut(s) 1236, 1252, 1303, 1325
SfcI CTRYAG 1 cut(s) 649
Sfr274I CTCGAG 1 cut(s) 702
SlaI CTCGAG 1 cut(s) 702
SmiMI CAYNNNNRTG 1 cut(s) 968
SmlI CTYRAG 1 cut(s) 702
SmoI CTYRAG 1 cut(s) 702
SpeI ACTAGT 1 cut(s) 158
SsiI CCGC 1 cut(s) 1065
SspMI CTAG 4 cut(s) 159, 401, 966, 1053
StyD4I CCNGG 2 cut(s) 1157, 1174
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 6 cut(s) 427, 454, 875, 1093, 1152, 1276
TaiI ACGT 1 cut(s) 280
TaqI TCGA 4 cut(s) 108, 703, 1080, 1278
TfiI GAWTC 5 cut(s) 637, 899, 926, 1072, 1082
Tru1I TTAA 2 cut(s) 281, 383
Tru9I TTAA 2 cut(s) 281, 383
TscAI CASTG 3 cut(s) 478, 738, 834
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 2 cut(s) 133, 1105
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 3 cut(s) 287, 897, 1256
TspRI CASTG 3 cut(s) 478, 738, 834
XapI RAATTY 4 cut(s) 375, 616, 943, 1290
XcmI CCANNNNNNNNNTGG 2 cut(s) 608, 716
XhoI CTCGAG 1 cut(s) 702
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 4 cut(s) 159, 401, 966, 1053
Zsp2I ATGCAT 2 cut(s) 1251, 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.