Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004241

Physical Location & Seq

Genomic Coordinates Forward (+)

54042711 .. 54047738

Gene Structure 5028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

ATGGACGGGTCACCGGAAACGAATCGGGTTGCCGCGGCTGCCGCCTCATCGCCGGCCCAAGCCTCGTCTCCGGCTGTGCAAGAGTCGCCTTTCTCCAATTTCCTTAGCAATCTCACTCCTATCAATACAGTGAAGAGTGATAGTTATTCACAAAGATTAGTAGGAACCTTCTTCCCAACGCCACCAGTTGTCTTTACATCTCCCCATATTGATCTGGAGCGCGAAACCAGTTTCTTGGAAAGGAATGATATAGTTGAAGCAGGTTATAAAGAATGTAATACAACTATATTCCAGAACCCTAGTTTTGAGAAGGAGGTCCAGTTGTGCAGTGCATCAGGGTGTATTGATGAATATTTGGCTGACCCTGCGAAGGTAGACTGTACAGGTTCTGCTGATATACAGAGCAGTATCAATGCCGGCAAAGAATCCAATACGGAAGTTCATGAGGTTATTGATGGTAGTACAAAGAGTGAACCCCTTCCAACATTGAATCAAGCTGAAGTGGGTCTGCCTTTACCTTCACTGACACAGATTGAAACCACAATCATTGAGAAGATTGATAAAAATAGTGTAGATCTTGTCACCCGAGCACAAAGCCGTGGACAGAATACAGCTAAGGAGGTTAGTCAACACCACCGTGGTATACGTAGGCATCTCCAATTTGAGACTGCAGTAGCCCAGAAGAGTTCTAACTTTGGTAACCATCGAAGTCTTTGCAGTCTGACGCATGATACTGACAATTTAAGGTCACAATCCAAACTAACAAACTTGAAGACTCTAGCTTCTTCTCATTTAGATAGCAAAGCCTTCAGCAGTCTGCAGGGTGTTAGCTGTGACACTTCACAATTGTCTTCTTGCCTCTGTGAGTCAGTTAGATCCAGCCAAATTGGTGGAAACTCTTCCACCTCAGCTCCTATTCGTTCTGGTATTGGTTTACATCTGAATAGCATTACTCGATCTACATCCATGAGCTCAGATGTATTGCTAAGCAGGAAAGCAACTGGTTGTCTGAGTACACCAGACCAGATGTTGGAGCATGACAACAGAAACAACATAGAACATGAGTCAAGTAGTAGCTTTATTTCAGTTGTACTTGGGCAAAATTATTCTTCTGTGGGCAATGATCAACAAGAAAGTCAAACCGCTGCGCACACTACTTTCACTTTTTATTCTACTGATGGTGTGCCATACCTTCCATGTGATTCTATGCATCAGATACTGGTTGACCAGCACTCAGTTCCTTGTGAGGAGATGAATGCTTCACAGGATGCAAACAAGATTGAGGAATTAAACGAACTGAGCCAAAAAAGGAAAAGGAGAAGAGGTGCAGAGATAAGTGAGGGCTGCAAACGCTGCAACTGTAAGAAGTCTAAATGTTTGAAACTTTATTGTGAGTGCTTTGCAGCTGGAGTATTTTGTTTGGATTCATGTGCATGTGAAAACTGCTACAACAAGCCTGAGTTTGAGGACACTGTTTTTGATGCACGTCAGCAAATTGAATCCCGTAATCCGCTGGCATTTGCTCCCAAAGTTGTGAAGCATGAAATCAACTCTTTGCCTAACATTATGGAAGAAGCAGACTGGACGACCCCATCATCAGCTAGGCACAAGAGAGGTTGCAATTGCAAGAAGTCAAAGTGCCTGAAAAAATACTGTGAATGCTTCCAGGCTAATGTTGGATGTTCTGGCGCATGTAGATGTGATTGTTGCCAAAATCCGTGTGGCACTAAGGCAGACCATGAATACAACCGAGCTGAAAAGTGGGAAACCCACCCTGCTGAGAAGCTGGATACTATTAAGGGTGGGAATGATTGCATCAAGGCCTCGGATATGGATCCGTACTCTCCATGGGAAGGACTTTCTGTTATAAGCAATCTCACGCCATTGTCAAATCCTTGCTCAAGTACAAGGGTTTCTTCAGCTTCATCAAGTATGAGAAACCGCACAAAAATTTCGCAAGCCCAATTACAATCAAGTAGGCTTCAGCCATCAGGTACTGGTCACTTGAAAAGGGGACGGTCACCTGTCATATTTACCCCACAAGTATTTGAAAGCAAGGGGCCCTCTCAGCTCAGTTCTGATGGTGCCAGTTATGAAAGAATGGATGATGATATACCTGAGTTACTGAAGGAACCTTCTATCCCCCCCAAGGTTGTCAAAGGTTCACCAAACCAGAAACGTGTGTCACCTCCACAATCCCGAGCTGAGAAGTTGCGGTCAAGGTCTCCTAAAGGCTTGAGAAGTGGCCGCAAATTCATTTTGCAGGCTATGCCTTCTTTCCCTCCTCTCTCCCCGTACAGCGATTCTAAAGCTATCAATGATACTAGGAATGACCATAAAGGTACCCAGAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

785

Amino Acids

85.94

Weight (kDa)

7.01

Isoelectric Point (pI)

62.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCR	PF03638	450 - 485	3.4e-11	Tesmin/TSO1-like CXC domain, cysteine-rich domain
TCR	PF03638	537 - 572	4e-10	Tesmin/TSO1-like CXC domain, cysteine-rich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004241)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420 FvH4_6g30420
prunus_persica	Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1 Prupe.3G078800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136761
rosa_laevigata	RLG00000019570
rosa_multiflora	Rmu_co8313053.1_g000001 Rmu_sc0001299.1_g000020
rosa_roxburghii	Rroxscaffold_2G00108090
rosa_rugosa	Rorug02G0332900 Rorug02G0333000
rosa_samantha	Rh2AG383700 Rh2BG390400 Rh2CG370200 Rh2DG407000
rosa_wichuraiana	Rw2G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 1868
Acc16I	TGCGCA	1 cut(s)	1149
Acc36I	ACCTGC	1 cut(s)	251
Acc65I	GGTACC	1 cut(s)	2342
AccB1I	GGYRCC	2 cut(s)	2084, 2342
AccB7I	CCANNNNNTGG	1 cut(s)	1030
AccI	GTMKAC	2 cut(s)	375, 643
AccII	CGCG	2 cut(s)	35, 222
AciI	CCGC	8 cut(s)	33, 35, 42, 1143, 1511, 1942, 2215, 2248
AclWI	GGATC	3 cut(s)	870, 1829, 1842
AcoI	YGGCCR	1 cut(s)	2245
AcsI	RAATTY	2 cut(s)	1950, 2252
AcuI	CTGAAG	5 cut(s)	519, 793, 1902, 1967, 2147
AfaI	GTAC	9 cut(s)	382, 463, 1015, 1092, 1841, 1906, 1996, 2297, 2344
AfiI	CCNNNNNNNGG	4 cut(s)	370, 1030, 1853, 2149
AflIII	ACRYGT	1 cut(s)	2179
AgsI	TTSAA	8 cut(s)	257, 490, 536, 772, 1381, 1499, 2008, 2051
AjiI	CACGTC	1 cut(s)	1487
AjnI	CCWGG	1 cut(s)	1665
AleI	CACNNNNGTG	1 cut(s)	636
AloI	GAACNNNNNNTCC	2 cut(s)	2124, 2156
Alw21I	GWGCWC	2 cut(s)	592, 974
Alw26I	GTCTC	3 cut(s)	72, 659, 2229
AlwI	GGATC	3 cut(s)	870, 1829, 1842
AlwNI	CAGNNNCTG	3 cut(s)	389, 1219, 1997
Ama87I	CYCGRG	2 cut(s)	585, 2199
AoxI	GGCC	4 cut(s)	54, 1821, 2060, 2245
ApaI	GGGCCC	1 cut(s)	2064
ApeKI	GCWGC	5 cut(s)	38, 1145, 1344, 1353, 1403
ApoI	RAATTY	2 cut(s)	1950, 2252
ArsI	GACNNNNNNTTYG	2 cut(s)	1460, 1492
Asp700I	GAANNNNTTC	2 cut(s)	477, 898
Asp718I	GGTACC	1 cut(s)	2342
AspLEI	GCGC	3 cut(s)	222, 1150, 1691
AspS9I	GGNCC	4 cut(s)	55, 316, 2060, 2061
AsuHPI	GGTGA	5 cut(s)	3, 574, 2013, 2157, 2178
AvaI	CYCGRG	2 cut(s)	585, 2199
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	2064
BamHI	GGATCC	1 cut(s)	1834
BanI	GGYRCC	2 cut(s)	2084, 2342
BanII	GRGCYC	2 cut(s)	974, 2064
BbsI	GAAGAC	2 cut(s)	779, 843
Bbv12I	GWGCWC	2 cut(s)	592, 974
BbvCI	CCTCAGC	1 cut(s)	907
BbvI	GCAGC	5 cut(s)	25, 1132, 1331, 1340, 1415
BccI	CCATC	6 cut(s)	449, 711, 1172, 1600, 1996, 2075
BceAI	ACGGC	1 cut(s)	582
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BciT130I	CCWGG	1 cut(s)	1667
BciVI	GTATCC	1 cut(s)	1783
BclI	TGATCA	1 cut(s)	1123
BcoDI	GTCTC	3 cut(s)	72, 659, 2229
BfaI	CTAG	4 cut(s)	300, 779, 1602, 2325
BfmI	CTRYAG	2 cut(s)	669, 818
BfuAI	ACCTGC	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	1783
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	9 cut(s)	33, 36, 39, 42, 1146, 1345, 1354, 1404, 2248
BlpI	GCTNAGC	1 cut(s)	986
BlsI	GCNGC	9 cut(s)	34, 37, 40, 43, 1147, 1346, 1355, 1405, 2249
Bme1390I	CCNGG	1 cut(s)	1667
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	2 cut(s)	585, 2199
BmgBI	CACGTC	1 cut(s)	1487
BmgT120I	GGNCC	4 cut(s)	55, 316, 2060, 2061
BmiI	GGNNCC	7 cut(s)	166, 1836, 2061, 2062, 2086, 2133, 2344
BmrFI	CCNGG	1 cut(s)	1667
BmsI	GCATC	6 cut(s)	341, 661, 1219, 1258, 1471, 1824
BpiI	GAAGAC	2 cut(s)	779, 843
BpmI	CTGGAG	2 cut(s)	236, 1428
Bpu10I	CCTNAGC	3 cut(s)	104, 615, 907
Bpu1102I	GCTNAGC	1 cut(s)	986
BpuEI	CTTGAG	2 cut(s)	1885, 2257
BsaAI	YACGTR	1 cut(s)	647
BsaBI	GATNNNNATC	2 cut(s)	961, 1833
BsaI	GGTCTC	1 cut(s)	2229
BsaJI	CCNNGG	6 cut(s)	33, 598, 637, 1824, 1847, 2148
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	6 cut(s)	305, 335, 895, 925, 1309, 1339
Bsc4I	CCNNNNNNNGG	4 cut(s)	370, 1030, 1853, 2149
Bse118I	RCCGGY	2 cut(s)	52, 416
Bse1I	ACTGG	8 cut(s)	185, 228, 319, 1006, 1224, 1586, 2002, 2088
Bse3DI	GCAATG	1 cut(s)	1126
Bse8I	GATNNNNATC	2 cut(s)	961, 1833
BseBI	CCWGG	1 cut(s)	1667
BseDI	CCNNGG	6 cut(s)	33, 598, 637, 1824, 1847, 2148
BseGI	GGATG	4 cut(s)	962, 1273, 1685, 2110
BseJI	GATNNNNATC	2 cut(s)	961, 1833
BseLI	CCNNNNNNNGG	4 cut(s)	370, 1030, 1853, 2149
BseMI	GCAATG	1 cut(s)	1126
BseNI	ACTGG	8 cut(s)	185, 228, 319, 1006, 1224, 1586, 2002, 2088
BseRI	GAGGAG	2 cut(s)	1262, 2274
BseSI	GKGCMC	1 cut(s)	2064
BseXI	GCAGC	5 cut(s)	25, 1132, 1331, 1340, 1415
BsgI	GTGCAG	2 cut(s)	346, 1347
Bsh1236I	CGCG	2 cut(s)	35, 222
BshFI	GGCC	4 cut(s)	56, 1823, 2062, 2247
BshNI	GGYRCC	2 cut(s)	2084, 2342
BsiHKAI	GWGCWC	2 cut(s)	592, 974
BsiHKCI	CYCGRG	2 cut(s)	585, 2199
BsiSI	CCGG	4 cut(s)	14, 53, 71, 417
BslFI	GGGAC	1 cut(s)	2028
BslI	CCNNNNNNNGG	4 cut(s)	370, 1030, 1853, 2149
BsmAI	GTCTC	3 cut(s)	72, 659, 2229
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	2028
BsmI	GAATGC	2 cut(s)	1261, 1664
BsnI	GGCC	4 cut(s)	56, 1823, 2062, 2247
Bso31I	GGTCTC	1 cut(s)	2229
BsoBI	CYCGRG	2 cut(s)	585, 2199
Bsp120I	GGGCCC	1 cut(s)	2060
Bsp1286I	GDGCHC	3 cut(s)	592, 974, 2064
Bsp1407I	TGTACA	1 cut(s)	380
Bsp143I	GATC	6 cut(s)	211, 574, 875, 956, 1123, 1834
Bsp1720I	GCTNAGC	1 cut(s)	986
Bsp19I	CCATGG	1 cut(s)	1847
BspACI	CCGC	8 cut(s)	33, 35, 42, 1143, 1511, 1942, 2215, 2248
BspANI	GGCC	4 cut(s)	56, 1823, 2062, 2247
BspFNI	CGCG	2 cut(s)	35, 222
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	7 cut(s)	166, 1836, 2061, 2062, 2086, 2133, 2344
BspMAI	CTGCAG	2 cut(s)	673, 822
BspMI	ACCTGC	1 cut(s)	251
BspPI	GGATC	3 cut(s)	870, 1829, 1842
BspT107I	GGYRCC	2 cut(s)	2084, 2342
BspTNI	GGTCTC	1 cut(s)	2229
BsrDI	GCAATG	1 cut(s)	1126
BsrFI	RCCGGY	2 cut(s)	52, 416
BsrGI	TGTACA	1 cut(s)	380
BsrI	ACTGG	8 cut(s)	185, 228, 319, 1006, 1224, 1586, 2002, 2088
BssAI	RCCGGY	2 cut(s)	52, 416
BssECI	CCNNGG	6 cut(s)	33, 598, 637, 1824, 1847, 2148
BssMI	GATC	6 cut(s)	211, 574, 875, 956, 1123, 1834
BssNAI	GTATAC	1 cut(s)	644
BssT1I	CCWWGG	2 cut(s)	1847, 2148
Bst1107I	GTATAC	1 cut(s)	644
Bst2UI	CCWGG	1 cut(s)	1667
Bst4CI	ACNGT	7 cut(s)	130, 380, 638, 1361, 1474, 1655, 2019
Bst6I	CTCTTC	4 cut(s)	128, 677, 904, 1315
BstAPI	GCANNNNNTGC	2 cut(s)	1353, 2269
BstAUI	TGTACA	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	647
BstC8I	GCNNGC	5 cut(s)	54, 418, 1515, 1959, 2265
BstDSI	CCRYGG	4 cut(s)	33, 598, 637, 1847
BstEII	GGTNACC	3 cut(s)	9, 698, 2019
BstF5I	GGATG	4 cut(s)	962, 1273, 1685, 2110
BstFNI	CGCG	2 cut(s)	35, 222
BstHHI	GCGC	3 cut(s)	222, 1150, 1691
BstKTI	GATC	6 cut(s)	214, 577, 878, 959, 1126, 1837
BstMAI	GTCTC	3 cut(s)	72, 659, 2229
BstMBI	GATC	6 cut(s)	211, 574, 875, 956, 1123, 1834
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 41, 85, 365, 1350, 1353, 2068, 2269
BstNI	CCWGG	1 cut(s)	1667
BstNSI	RCATGY	2 cut(s)	1437, 1695
BstPI	GGTNACC	3 cut(s)	9, 698, 2019
BstSCI	CCNGG	1 cut(s)	1665
BstSFI	CTRYAG	2 cut(s)	669, 818
BstSLI	GKGCMC	1 cut(s)	2064
BstSNI	TACGTA	1 cut(s)	647
BstUI	CGCG	2 cut(s)	35, 222
BstV1I	GCAGC	5 cut(s)	25, 1132, 1331, 1340, 1415
BstV2I	GAAGAC	2 cut(s)	779, 843
BstX2I	RGATCY	3 cut(s)	574, 875, 1834
BstXI	CCANNNNNNTGG	2 cut(s)	235, 890
BstYI	RGATCY	3 cut(s)	574, 875, 1834
BstZ17I	GTATAC	1 cut(s)	644
BsuI	GTATCC	1 cut(s)	1783
BsuRI	GGCC	4 cut(s)	56, 1823, 2062, 2247
BtgI	CCRYGG	4 cut(s)	33, 598, 637, 1847
BtgZI	GCGATG	1 cut(s)	33
BtrI	CACGTC	1 cut(s)	1487
BtsCI	GGATG	4 cut(s)	962, 1273, 1685, 2110
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	4 cut(s)	135, 334, 521, 1470
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	5 cut(s)	54, 418, 1515, 1959, 2265
CaiI	CAGNNNCTG	3 cut(s)	389, 1219, 1997
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	3 cut(s)	222, 1150, 1691
Cfr10I	RCCGGY	2 cut(s)	52, 416
Cfr13I	GGNCC	4 cut(s)	55, 316, 2060, 2061
Cfr42I	CCGCGG	1 cut(s)	36
CseI	GACGC	1 cut(s)	733
Csp6I	GTAC	9 cut(s)	381, 462, 1014, 1091, 1840, 1905, 1995, 2296, 2343
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviQI	GTAC	9 cut(s)	381, 462, 1014, 1091, 1840, 1905, 1995, 2296, 2343
DpnI	GATC	6 cut(s)	213, 576, 877, 958, 1125, 1836
DpnII	GATC	6 cut(s)	211, 574, 875, 956, 1123, 1834
EaeI	YGGCCR	1 cut(s)	2245
Eam1104I	CTCTTC	4 cut(s)	128, 677, 904, 1315
EarI	CTCTTC	4 cut(s)	128, 677, 904, 1315
Ecl136II	GAGCTC	1 cut(s)	972
Eco105I	TACGTA	1 cut(s)	647
Eco130I	CCWWGG	2 cut(s)	1847, 2148
Eco147I	AGGCCT	1 cut(s)	1823
Eco24I	GRGCYC	2 cut(s)	974, 2064
Eco31I	GGTCTC	1 cut(s)	2229
Eco47I	GGWCC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	972
Eco57I	CTGAAG	5 cut(s)	519, 793, 1902, 1967, 2147
Eco88I	CYCGRG	2 cut(s)	585, 2199
Eco91I	GGTNACC	3 cut(s)	9, 698, 2019
EcoICRI	GAGCTC	1 cut(s)	972
EcoO109I	RGGNCCY	2 cut(s)	2060, 2061
EcoO65I	GGTNACC	3 cut(s)	9, 698, 2019
EcoRII	CCWGG	1 cut(s)	1665
EcoT14I	CCWWGG	2 cut(s)	1847, 2148
EcoT22I	ATGCAT	1 cut(s)	1212
EcoT38I	GRGCYC	2 cut(s)	974, 2064
ErhI	CCWWGG	2 cut(s)	1847, 2148
Esp3I	CGTCTC	1 cut(s)	72
FalI	AAGNNNNNCTT	2 cut(s)	1900, 1932
FaqI	GGGAC	1 cut(s)	2028
FbaI	TGATCA	1 cut(s)	1123
FblI	GTMKAC	2 cut(s)	375, 643
Fnu4HI	GCNGC	9 cut(s)	33, 36, 39, 42, 1146, 1345, 1354, 1404, 2248
FokI	GGATG	4 cut(s)	949, 1280, 1692, 2117
FriOI	GRGCYC	2 cut(s)	974, 2064
Fsp4HI	GCNGC	9 cut(s)	33, 36, 39, 42, 1146, 1345, 1354, 1404, 2248
FspBI	CTAG	4 cut(s)	300, 779, 1602, 2325
FspI	TGCGCA	1 cut(s)	1149
GlaI	GCGC	3 cut(s)	221, 1149, 1690
GluI	GCNGC	9 cut(s)	33, 36, 39, 42, 1146, 1345, 1354, 1404, 2248
GsuI	CTGGAG	2 cut(s)	236, 1428
HaeIII	GGCC	4 cut(s)	56, 1823, 2062, 2247
HapII	CCGG	4 cut(s)	14, 53, 71, 417
HgaI	GACGC	1 cut(s)	733
HhaI	GCGC	3 cut(s)	222, 1150, 1691
Hin6I	GCGC	3 cut(s)	220, 1148, 1689
HinP1I	GCGC	3 cut(s)	220, 1148, 1689
HincII	GTYRAC	2 cut(s)	629, 1225
HindII	GTYRAC	2 cut(s)	629, 1225
HpaII	CCGG	4 cut(s)	14, 53, 71, 417
HphI	GGTGA	5 cut(s)	3, 574, 2013, 2157, 2178
Hpy166II	GTNNAC	9 cut(s)	376, 473, 602, 629, 644, 935, 1016, 1225, 2165
Hpy188I	TCNGA	7 cut(s)	723, 942, 976, 1011, 1215, 1828, 2080
Hpy188III	TCNNGA	4 cut(s)	215, 292, 443, 2199
Hpy8I	GTNNAC	9 cut(s)	376, 473, 602, 629, 644, 935, 1016, 1225, 2165
HpyCH4III	ACNGT	7 cut(s)	130, 380, 638, 1361, 1474, 1655, 2019
HpyCH4IV	ACGT	3 cut(s)	646, 1486, 2179
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 41, 85, 365, 1350, 1353, 2068, 2269
HpySE526I	ACGT	3 cut(s)	646, 1486, 2179
HspAI	GCGC	3 cut(s)	220, 1148, 1689
KpnI	GGTACC	1 cut(s)	2346
KroI	GCCGGC	2 cut(s)	52, 416
KroNI	GCCGGC	2 cut(s)	54, 418
Ksp22I	TGATCA	1 cut(s)	1123
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	6 cut(s)	211, 574, 875, 956, 1123, 1834
LmnI	GCTCC	4 cut(s)	217, 916, 1033, 1528
Lsp1109I	GCAGC	5 cut(s)	25, 1132, 1331, 1340, 1415
LweI	GCATC	6 cut(s)	341, 661, 1219, 1258, 1471, 1824
MaeI	CTAG	4 cut(s)	300, 779, 1602, 2325
MaeII	ACGT	3 cut(s)	646, 1486, 2179
MaeIII	GTNAC	9 cut(s)	9, 580, 698, 747, 833, 2000, 2019, 2121, 2184
MalI	GATC	6 cut(s)	213, 576, 877, 958, 1125, 1836
MboI	GATC	6 cut(s)	211, 574, 875, 956, 1123, 1834
MfeI	CAATTG	2 cut(s)	845, 1621
MflI	RGATCY	3 cut(s)	574, 875, 1834
MhlI	GDGCHC	3 cut(s)	592, 974, 2064
MlyI	GAGTC	4 cut(s)	92, 769, 875, 1073
MmeI	TCCRAC	3 cut(s)	506, 1011, 1657
Mph1103I	ATGCAT	1 cut(s)	1212
MroNI	GCCGGC	2 cut(s)	52, 416
MroXI	GAANNNNTTC	2 cut(s)	477, 898
MseI	TTAA	3 cut(s)	743, 1289, 1797
MslI	CAYNNNNRTG	4 cut(s)	337, 636, 1432, 1696
MspA1I	CMGCKG	4 cut(s)	35, 1145, 1406, 1513
MspI	CCGG	4 cut(s)	14, 53, 71, 417
MspR9I	CCNGG	1 cut(s)	1667
MunI	CAATTG	2 cut(s)	845, 1621
Mva1269I	GAATGC	2 cut(s)	1261, 1664
MvaI	CCWGG	1 cut(s)	1667
MvnI	CGCG	2 cut(s)	35, 222
MwoI	GCNNNNNNNGC	8 cut(s)	38, 41, 85, 365, 1350, 1353, 2068, 2269
NaeI	GCCGGC	2 cut(s)	54, 418
NcoI	CCATGG	1 cut(s)	1847
NdeII	GATC	6 cut(s)	211, 574, 875, 956, 1123, 1834
NgoMIV	GCCGGC	2 cut(s)	52, 416
NlaIV	GGNNCC	7 cut(s)	166, 1836, 2061, 2062, 2086, 2133, 2344
NmuCI	GTSAC	7 cut(s)	9, 580, 747, 833, 2000, 2019, 2184
NsbI	TGCGCA	1 cut(s)	1149
NsiI	ATGCAT	1 cut(s)	1212
NspI	RCATGY	2 cut(s)	1437, 1695
OliI	CACNNNNGTG	1 cut(s)	636
PagI	TCATGA	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	1823
PctI	GAATGC	2 cut(s)	1261, 1664
PdiI	GCCGGC	2 cut(s)	54, 418
PdmI	GAANNNNTTC	2 cut(s)	477, 898
PfeI	GAWTC	7 cut(s)	22, 425, 490, 1202, 1424, 1499, 2303
PflMI	CCANNNNNTGG	1 cut(s)	1030
PkrI	GCNGC	9 cut(s)	34, 37, 40, 43, 1147, 1346, 1355, 1405, 2249
PleI	GAGTC	4 cut(s)	91, 769, 874, 1072
PpsI	GAGTC	4 cut(s)	91, 769, 874, 1072
Ppu21I	YACGTR	1 cut(s)	647
PsiI	TTATAA	2 cut(s)	267, 1868
Psp124BI	GAGCTC	1 cut(s)	974
Psp6I	CCWGG	1 cut(s)	1665
PspEI	GGTNACC	3 cut(s)	9, 698, 2019
PspGI	CCWGG	1 cut(s)	1665
PspN4I	GGNNCC	7 cut(s)	166, 1836, 2061, 2062, 2086, 2133, 2344
PspOMI	GGGCCC	1 cut(s)	2060
PspPI	GGNCC	4 cut(s)	55, 316, 2060, 2061
PstI	CTGCAG	2 cut(s)	673, 822
PstNI	CAGNNNCTG	3 cut(s)	389, 1219, 1997
PsuI	RGATCY	3 cut(s)	574, 875, 1834
PvuII	CAGCTG	1 cut(s)	1406
RsaI	GTAC	9 cut(s)	382, 463, 1015, 1092, 1841, 1906, 1996, 2297, 2344
RsaNI	GTAC	9 cut(s)	381, 462, 1014, 1091, 1840, 1905, 1995, 2296, 2343
RseI	CAYNNNNRTG	4 cut(s)	337, 636, 1432, 1696
SacI	GAGCTC	1 cut(s)	974
SacII	CCGCGG	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	743, 1289, 1797
SatI	GCNGC	9 cut(s)	33, 36, 39, 42, 1146, 1345, 1354, 1404, 2248
Sau3AI	GATC	6 cut(s)	211, 574, 875, 956, 1123, 1834
Sau96I	GGNCC	4 cut(s)	55, 316, 2060, 2061
SchI	GAGTC	4 cut(s)	92, 769, 875, 1073
ScrFI	CCNGG	1 cut(s)	1667
SduI	GDGCHC	3 cut(s)	592, 974, 2064
SfaNI	GCATC	6 cut(s)	341, 661, 1219, 1258, 1471, 1824
SfcI	CTRYAG	2 cut(s)	669, 818
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	4 cut(s)	337, 636, 1432, 1696
SmlI	CTYRAG	2 cut(s)	1900, 2236
SmoI	CTYRAG	2 cut(s)	1900, 2236
SnaBI	TACGTA	1 cut(s)	647
SseBI	AGGCCT	1 cut(s)	1823
SsiI	CCGC	8 cut(s)	33, 35, 42, 1143, 1511, 1942, 2215, 2248
SspI	AATATT	1 cut(s)	353
SspMI	CTAG	4 cut(s)	300, 779, 1602, 2325
SstI	GAGCTC	1 cut(s)	974
StuI	AGGCCT	1 cut(s)	1823
StyD4I	CCNGG	1 cut(s)	1665
StyI	CCWWGG	2 cut(s)	1847, 2148
TaaI	ACNGT	7 cut(s)	130, 380, 638, 1361, 1474, 1655, 2019
TaiI	ACGT	3 cut(s)	649, 1489, 2182
TaqI	TCGA	2 cut(s)	706, 955
TatI	WGTACW	5 cut(s)	380, 461, 1013, 1090, 1904
TauI	GCSGC	4 cut(s)	35, 38, 44, 2250
TfiI	GAWTC	7 cut(s)	22, 425, 490, 1202, 1424, 1499, 2303
Tru1I	TTAA	3 cut(s)	743, 1289, 1797
Tru9I	TTAA	3 cut(s)	743, 1289, 1797
TscAI	CASTG	4 cut(s)	135, 334, 528, 1477
TseFI	GTSAC	7 cut(s)	9, 580, 747, 833, 2000, 2019, 2184
TseI	GCWGC	5 cut(s)	38, 1145, 1344, 1353, 1403
Tsp45I	GTSAC	7 cut(s)	9, 580, 747, 833, 2000, 2019, 2184
TspDTI	ATGAA	9 cut(s)	363, 431, 1268, 1416, 1557, 1755, 1914, 2109, 2245
TspGWI	ACGGA	3 cut(s)	449, 1707, 1827
TspRI	CASTG	4 cut(s)	135, 334, 528, 1477
Van91I	CCANNNNNTGG	1 cut(s)	1030
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	2 cut(s)	1950, 2252
XceI	RCATGY	2 cut(s)	1437, 1695
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1673, 1718
XmiI	GTMKAC	2 cut(s)	375, 643
XmnI	GAANNNNTTC	2 cut(s)	477, 898
XspI	CTAG	4 cut(s)	300, 779, 1602, 2325
Zsp2I	ATGCAT	1 cut(s)	1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.