RchiOBHm_Chr2g0137751

Protein SYS1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010851
Physical Location & Seq
Reverse (-)
55556089 .. 55558335
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGTTCTATGGTGCATTAGTATGGGACCCTTGGCTCATTGTTGTCCAAATTGTGTGCCTTCAATGTCTGTACTATCTCACTCTTGGATTGTTCTTGGCAATTCTTGTTGGGACTCGCGTGTCGCGAATGAGCCTTGTGTATTTCTTTGATTATGCTACCCTCACCATCTCCACTGTCACCGGGTGGTGCGTCGTTACTTCCTTTGTGCTCAGTGCACTTGCAAGCGCTGGGTATCTACTGCTTCTGATTGAGAGGTCAAAAAAGTGCTTAGATTTTTCAGTCACCCTGTACATCGTCCATCTCTTTATCTGCATTGGTTATGGGGGTTGGCCTTCTTCAATAACATGGTGGGTTGTAAATGGTACTGGAATTGGAGTGATGGCTTTGTTAGGTGAATACCTCTGCATGAGACGTGAACTGCAGGAGATCAAGATCCCTACAACACGATATCGCTCAAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SYS1

Protein Analysis

154

Amino Acids

17.43

Weight (kDa)

8.55

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYS1 PF09801 6 - 144 9.8e-47 Integral membrane protein S linking to the trans Golgi network
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010851)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79985 AT1G79985 AT1G79985
fragaria_vesca FvH4_6g31060 FvH4_6g49470
malus_domestica MD09G1213900.v1.1 MD17G1196000.v1.1
prunus_persica Prupe.3G071900_v2.0.a1 Prupe.3G071900_v2.0.a1
pyrus_communis pycom09g13080
rosa_chinensis RchiOBHm_Chr2g0137751
rosa_laevigata RLG00000019673
rosa_multiflora Rmu_sc0008270.1_g000012
rosa_roxburghii Rroxscaffold_2G00106870
rosa_rugosa Rorug02G0344700.1 Rorug02G0344800 Rorug02G0344900
rosa_samantha Rh2BG400000 Rh2DG414800
rosa_wichuraiana Rw2G032150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AccII CGCG 2 cut(s) 117, 124
AclWI GGATC 1 cut(s) 427
AdeI CACNNNGTG 1 cut(s) 183
AfaI GTAC 3 cut(s) 71, 290, 364
AfeI AGCGCT 1 cut(s) 226
AgsI TTSAA 2 cut(s) 62, 339
AjiI CACGTC 1 cut(s) 413
Alw21I GWGCWC 2 cut(s) 210, 217
Alw26I GTCTC 1 cut(s) 403
Alw44I GTGCAC 1 cut(s) 213
AlwI GGATC 1 cut(s) 427
Aor51HI AGCGCT 1 cut(s) 226
AoxI GGCC 1 cut(s) 329
ApaLI GTGCAC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 4 cut(s) 154, 169, 274, 404
AvaII GGWCC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 217
Bbv12I GWGCWC 2 cut(s) 210, 217
BccI CCATC 3 cut(s) 173, 306, 373
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 403
BfmI CTRYAG 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 26, 27
BmrFI CCNGG 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 370
Bse8I GATNNNNATC 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 431
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 217
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 2 cut(s) 117, 124
BshFI GGCC 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 210, 217
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 38, 124
BsmAI GTCTC 1 cut(s) 403
BsmBI CGTCTC 1 cut(s) 403
BsmFI GGGAC 2 cut(s) 38, 124
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 210, 217
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 2 cut(s) 426, 432
Bsp68I TCGCGA 1 cut(s) 124
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 222
BspFNI CGCG 2 cut(s) 117, 124
BspLI GGNNCC 2 cut(s) 26, 27
BspMAI CTGCAG 1 cut(s) 423
BspPI GGATC 1 cut(s) 427
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 426, 432
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 175
BstAUI TGTACA 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 209, 268
BstFNI CGCG 2 cut(s) 117, 124
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 2 cut(s) 429, 435
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 2 cut(s) 426, 432
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 419
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 2 cut(s) 117, 124
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 1 cut(s) 331
BtrI CACGTC 1 cut(s) 413
BtsIMutI CAGTG 2 cut(s) 171, 217
BtuMI TCGCGA 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 70, 289, 363
CviAII CATG 2 cut(s) 345, 406
CviJI RGCY 4 cut(s) 34, 132, 331, 383
CviKI_1 RGCY 4 cut(s) 34, 132, 331, 383
CviQI GTAC 3 cut(s) 70, 289, 363
DdeI CTNAG 2 cut(s) 209, 268
DpnI GATC 2 cut(s) 428, 434
DpnII GATC 2 cut(s) 426, 432
DraIII CACNNNGTG 1 cut(s) 183
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 29
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 25
EcoRV GATATC 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 2 cut(s) 348, 409
FaiI YATR 6 cut(s) 9, 22, 153, 321, 346, 407
FaqI GGGAC 2 cut(s) 38, 124
FatI CATG 2 cut(s) 344, 405
GlaI GCGC 1 cut(s) 226
GsaI CCCAGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 1 cut(s) 331
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 348, 409
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 180
HphI GGTGA 4 cut(s) 154, 169, 274, 404
Hpy166II GTNNAC 2 cut(s) 215, 416
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 2 cut(s) 123, 430
Hpy8I GTNNAC 2 cut(s) 215, 416
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 68, 342
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 6 cut(s) 14, 215, 221, 312, 405, 421
HpyF3I CTNAG 2 cut(s) 209, 268
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 2 cut(s) 348, 409
HspAI GCGC 1 cut(s) 225
KflI GGGWCCC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 426, 432
LpnPI CCDG 5 cut(s) 193, 213, 299, 351, 407
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 3 cut(s) 175, 193, 280
MalI GATC 2 cut(s) 428, 434
MboI GATC 2 cut(s) 426, 432
MboII GAAGA 1 cut(s) 327
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 2 cut(s) 210, 217
MluCI AATT 3 cut(s) 48, 99, 369
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 3 cut(s) 170, 246, 410
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 181
MvnI CGCG 2 cut(s) 117, 124
NciI CCSGG 1 cut(s) 181
NdeII GATC 2 cut(s) 426, 432
NlaIII CATG 2 cut(s) 348, 409
NlaIV GGNNCC 2 cut(s) 26, 27
NmuCI GTSAC 2 cut(s) 175, 280
NruI TCGCGA 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 26, 27
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PstI CTGCAG 1 cut(s) 423
PsuI RGATCY 1 cut(s) 432
RruI TCGCGA 1 cut(s) 124
RsaI GTAC 3 cut(s) 71, 290, 364
RsaNI GTAC 3 cut(s) 70, 289, 363
RseI CAYNNNNRTG 1 cut(s) 19
Sau3AI GATC 2 cut(s) 426, 432
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 2 cut(s) 210, 217
SetI ASST 4 cut(s) 257, 394, 402, 415
SfcI CTRYAG 1 cut(s) 419
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 19
Sse9I AATT 3 cut(s) 48, 99, 369
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 415
TasI AATT 3 cut(s) 48, 99, 369
TatI WGTACW 2 cut(s) 69, 288
TscAI CASTG 2 cut(s) 178, 217
TseFI GTSAC 2 cut(s) 175, 280
Tsp45I GTSAC 2 cut(s) 175, 280
TspRI CASTG 2 cut(s) 178, 217
VneI GTGCAC 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.