Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019743

Physical Location & Seq

Genomic Coordinates Reverse (-)

60761435 .. 60761766

Gene Structure 332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTGCTTGCAAATAGTGAAAGTGCCCTTCTTAAGGTCTTCGGATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACTTGTGGAACAAGCGGTCTGCCATTGATGATAAACCATGGTGTTACCGCAGTAGGTTATGGCGTTAGCGATGATGGGACTAGGTATTGGTTGGTTAAGAACTCATGGGGGGCACAATGGGGTGAAGAAGGGTACATAAGAATGCAAAGAGATGTTGCTGAGAAGGAAGGCTTGTGTGGTATTGCTATGGCAGCCTCTTATCCCACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

96

Amino Acids

10.47

Weight (kDa)

5.64

Isoelectric Point (pI)

22.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	6 - 95	2.4e-26	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019743)

Species	Orthologous Gene IDs
malus_domestica	MD13G1222000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0119141 RchiOBHm_Chr2g0143041 RchiOBHm_Chr5g0010821
rosa_multiflora	Rmu_sc0002277.1_g000013
rosa_roxburghii	Rroxscaffold_2G00102140
rosa_samantha	Rh2DG365300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 126
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	33
AflII	CTTAAG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	212
BaeGI	GKGCMC	2 cut(s)	27, 193
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	159
BfrI	CTTAAG	1 cut(s)	31
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	228
BseSI	GKGCMC	2 cut(s)	27, 193
BseXI	GCAGC	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	27, 193
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	2 cut(s)	93, 126
BspCNI	CTCAG	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	115
BstAFI	CTTAAG	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSLI	GKGCMC	2 cut(s)	27, 193
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	116, 183
CviJI	RGCY	2 cut(s)	249, 272
CviKI_1	RGCY	2 cut(s)	249, 272
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	119, 186
FaiI	YATR	6 cut(s)	117, 138, 184, 215, 266, 289
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	115, 182
Fnu4HI	GCNGC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	119, 186
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	37, 200, 235, 239
HpyCH4V	TGCA	2 cut(s)	10, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	119, 186
LpnPI	CCDG	1 cut(s)	60
Lsp1109I	GCAGC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	30, 215
MhlI	GDGCHC	2 cut(s)	27, 193
MluCI	AATT	1 cut(s)	50
MnlI	CCTC	1 cut(s)	283
MseI	TTAA	2 cut(s)	32, 174
MslI	CAYNNNNRTG	1 cut(s)	218
MspCI	CTTAAG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	115
NlaIII	CATG	2 cut(s)	119, 186
PctI	GAATGC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	271
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	32, 174
SatI	GCNGC	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	27, 193
SetI	ASST	3 cut(s)	38, 136, 164
SgeI	CNNG	9 cut(s)	19, 72, 87, 93, 102, 128, 171, 195, 262
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	2 cut(s)	93, 126
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	115
TasI	AATT	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	32, 174
Tru9I	TTAA	2 cut(s)	32, 174
TseI	GCWGC	1 cut(s)	269
Vha464I	CTTAAG	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.