RchiOBHm_Chr2g0146611

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
64234633 .. 64237942
3310 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1536 bp
ATGGCCTCCCTTACACCAGGAGTACTACTAAAGCTTCTTCAGAGCATGAACTCGAACATAAAGGTTCGTGGAGAATATCGGTCAGTCTTGCTACAAGTGATTAGCATTGTCCCTGCATTGAGTGGCTCAGAACTTTGGCCTAATCAAGGCTTCTTTGTAAAAGTCTCGGATTCTTCGCATTCGACTTATGTCTCCCTCTCAAAGGAGGACAGTGAGCTTATATTGAACAATAAGTTGCAGCTTGGCCAGTTCTTCTATGTTGATAGAGTGGAGGCAGGAACACCAGTTCCCATTCTTGAAGGGGTCAGGCCAGTTCCCGGACGACACCCTTTTGTGGGGAACCCAAAGGATTTGATGCAAATGGTGGAGCCATCAGAGGGTTCAGTCCAAGCTGATGATCATGCAGGAAGCAAATCAAGGGAGTCCTCCGATGCTAAAGAAGAAACCTCGAGACAAAAGATTGTTATTAAAGAGCAAAAGGCAGCTGTTGCATCTAGGTACATGCAAGGTTTTTCGACATTAAATTCAAAAGCTAACTCACAAGATTCTAATGGAGGTGGGAAGCACAATGATAATGAGAGTGGTGTGTTACAGGCACGCTCGATAACTCCTTCCCAAAGCAGAGCTGGTGCACTTTCATTAAAGTCAGAAGCAGCTGTATCGAACAACAAGGAGACTGCTGTGCCTTCTAAGAGAACTTCTGCAAAACGTGCTTCAATCATACAGGAAAACATAAATCTTAACTGTTTGTCAGTCCGGAAAGAGAAAAGCCTTCCACCAGAAGTAGCTTTGTGGGGTTCTCTGCCAGCTAACTTATTGAAGCCTGGAAAGGGAATGCTTAGAAGGCGAAATATAGCTTCTTTGGTTGCAGCAGAAGCTCAGAAAGAAGCATCTAGAGCTGCAACTCTTGTCAAATGTCTCAGTACGTTTGCCGATCTATGCTCGTCTGCCTCACCAGACAATCCCCACCTCTCACTCACCAAGTTTTTCAGACTCCACCAACTCATTGACCAACCAAATATTGCAGCTCCCTTAAAGGATAAATTAACTCCTTTAACTACAAAACAACTGCCTCCAGATATCGAAAAGTTGAGCAAAAGGACGGGCACAATTCATGGTCAAAGTGCATTGAAGTCTCCAAAGCTCCCCATCGAGTTAAGTGAAGCAGAGAAACTAGAATGGGCTAAAGGAGACAGTGCAAAAGGGATTGCAGAACTACGAGAACTTCTCTTAGATGAAACAAGGTCTTGGTTCTTGAAATTCTTGGAGGCAGCACTAGATGCTGGTGGCTTTCATCTGAATACACAAGAGAAGAAAGGCAAGGACAGTGCAGCGCGACGGAGTGAGCCAGACAACCATATTGCTGTGACATTATCACAGCTGAAAAGTTCAAATGAGTGGTTGGATAAACTGAAAACTAGTCTAAGCTCAGAGAGCAGTGAATTGGTGGAGACTGTTGACAGATTGAAACAAAAAGTATATGCTTGTTTACTTGTCCATGTGGAGTCTGCTGCTTCAGCTCTCGAAAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

55.65

Weight (kDa)

9.2

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 4 - 119 1.6e-53 Plant protein of unknown function (DUF936)
DUF6857 PF21647 263 - 343 8.6e-22 Domain of unknown function (DUF6857)
DUF6857 PF21647 364 - 508 2.4e-30 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013133)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1336
AccIII TCCGGA 1 cut(s) 756
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 2 cut(s) 523, 1259
AcuI CTGAAG 2 cut(s) 23, 1500
AfaI GTAC 3 cut(s) 24, 500, 925
AfiI CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 830
AgsI TTSAA 9 cut(s) 226, 299, 528, 717, 820, 1132, 1258, 1392, 1468
AhlI ACTAGT 1 cut(s) 1418
AjnI CCWGG 2 cut(s) 16, 823
AloI GAACNNNNNNTCC 4 cut(s) 270, 271, 302, 303
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 8 cut(s) 169, 196, 445, 668, 923, 1140, 1185, 1445
Alw44I GTGCAC 1 cut(s) 630
Ama87I CYCGRG 1 cut(s) 448
Aor13HI TCCGGA 1 cut(s) 756
AoxI GGCC 4 cut(s) 3, 137, 244, 308
ApaLI GTGCAC 1 cut(s) 630
ApeKI GCWGC 9 cut(s) 238, 482, 653, 869, 899, 1025, 1271, 1331, 1511
ApoI RAATTY 2 cut(s) 523, 1259
AspLEI GCGC 1 cut(s) 1336
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 945, 970
AvaI CYCGRG 1 cut(s) 448
BaeGI GKGCMC 2 cut(s) 634, 1109
BalI TGGCCA 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 9 cut(s) 250, 494, 665, 881, 886, 1037, 1283, 1343, 1498
BccI CCATC 2 cut(s) 379, 1157
BcgI CGANNNNNNTGC 2 cut(s) 642, 676
BciT130I CCWGG 2 cut(s) 18, 825
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 8 cut(s) 169, 196, 445, 668, 923, 1140, 1185, 1445
BcuI ACTAGT 1 cut(s) 1418
BfaI CTAG 5 cut(s) 495, 894, 1175, 1277, 1419
BisI GCNGC 9 cut(s) 239, 483, 654, 870, 900, 1026, 1272, 1332, 1512
BlsI GCNGC 9 cut(s) 240, 484, 655, 871, 901, 1027, 1273, 1333, 1513
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 3 cut(s) 18, 318, 825
BmeT110I CYCGRG 1 cut(s) 448
BmiI GGNNCC 2 cut(s) 341, 369
BmrFI CCNGG 3 cut(s) 18, 318, 825
BmsI GCATC 5 cut(s) 345, 421, 500, 899, 1270
BoxI GACNNNNGTC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 1212, 1244
BpmI CTGGAG 1 cut(s) 1059
BpuMI CCSGG 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 756
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 830
Bse1I ACTGG 3 cut(s) 247, 284, 311
BseAI TCCGGA 1 cut(s) 756
BseBI CCWGG 2 cut(s) 18, 825
BseLI CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 830
BseMII CTCAG 4 cut(s) 141, 893, 934, 1443
BseNI ACTGG 3 cut(s) 247, 284, 311
BseSI GKGCMC 2 cut(s) 634, 1109
BseXI GCAGC 9 cut(s) 250, 494, 665, 881, 886, 1037, 1283, 1343, 1498
BsgI GTGCAG 1 cut(s) 1350
Bsh1236I CGCG 1 cut(s) 1336
BshFI GGCC 4 cut(s) 5, 139, 246, 310
BsiHKAI GWGCWC 1 cut(s) 634
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 2 cut(s) 318, 757
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 830
BsmAI GTCTC 8 cut(s) 169, 196, 445, 668, 923, 1140, 1185, 1445
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 2 cut(s) 178, 840
BsnI GGCC 4 cut(s) 5, 139, 246, 310
BsoBI CYCGRG 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 634, 1109
Bsp13I TCCGGA 1 cut(s) 756
Bsp143I GATC 2 cut(s) 397, 934
BspANI GGCC 4 cut(s) 5, 139, 246, 310
BspCNI CTCAG 4 cut(s) 140, 892, 933, 1442
BspEI TCCGGA 1 cut(s) 756
BspFNI CGCG 1 cut(s) 1336
BspLI GGNNCC 2 cut(s) 341, 369
BsrI ACTGG 3 cut(s) 247, 284, 311
BssMI GATC 2 cut(s) 397, 934
Bst2UI CCWGG 2 cut(s) 18, 825
Bst4CI ACNGT 5 cut(s) 212, 746, 1196, 1328, 1456
BstAPI GCANNNNNTGC 3 cut(s) 488, 710, 1280
BstC8I GCNNGC 2 cut(s) 598, 807
BstDEI CTNAG 8 cut(s) 127, 690, 839, 879, 920, 1231, 1424, 1429
BstENI CCTNNNNNAGG 2 cut(s) 144, 200
BstFNI CGCG 1 cut(s) 1336
BstHHI GCGC 1 cut(s) 1336
BstKTI GATC 2 cut(s) 400, 937
BstMAI GTCTC 8 cut(s) 169, 196, 445, 668, 923, 1140, 1185, 1445
BstMBI GATC 2 cut(s) 397, 934
BstMWI GCNNNNNNNGC 8 cut(s) 488, 710, 844, 875, 896, 1280, 1434, 1517
BstNI CCWGG 2 cut(s) 18, 825
BstNSI RCATGY 1 cut(s) 505
BstPAI GACNNNNGTC 1 cut(s) 188
BstSCI CCNGG 3 cut(s) 16, 316, 823
BstSLI GKGCMC 2 cut(s) 634, 1109
BstUI CGCG 1 cut(s) 1336
BstV1I GCAGC 9 cut(s) 250, 494, 665, 881, 886, 1037, 1283, 1343, 1498
BsuRI GGCC 4 cut(s) 5, 139, 246, 310
BtsI GCAGTG 1 cut(s) 1444
BtsIMutI CAGTG 4 cut(s) 217, 1201, 1333, 1444
Cac8I GCNNGC 2 cut(s) 598, 807
CfoI GCGC 1 cut(s) 1336
Csp6I GTAC 3 cut(s) 23, 499, 924
CviAII CATG 5 cut(s) 46, 401, 502, 1115, 1499
CviQI GTAC 3 cut(s) 23, 499, 924
DdeI CTNAG 8 cut(s) 127, 690, 839, 879, 920, 1231, 1424, 1429
DpnI GATC 2 cut(s) 399, 936
DpnII GATC 2 cut(s) 397, 934
EaeI YGGCCR 1 cut(s) 244
Eco32I GATATC 1 cut(s) 1081
Eco57I CTGAAG 2 cut(s) 23, 1500
Eco88I CYCGRG 1 cut(s) 448
EcoNI CCTNNNNNAGG 2 cut(s) 144, 200
EcoRII CCWGG 2 cut(s) 16, 823
EcoRV GATATC 1 cut(s) 1081
FaeI CATG 5 cut(s) 49, 404, 505, 1118, 1502
FaqI GGGAC 1 cut(s) 95
FatI CATG 5 cut(s) 45, 400, 501, 1114, 1498
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 9 cut(s) 239, 483, 654, 870, 900, 1026, 1272, 1332, 1512
Fsp4HI GCNGC 9 cut(s) 239, 483, 654, 870, 900, 1026, 1272, 1332, 1512
FspBI CTAG 5 cut(s) 495, 894, 1175, 1277, 1419
GlaI GCGC 1 cut(s) 1335
GluI GCNGC 9 cut(s) 239, 483, 654, 870, 900, 1026, 1272, 1332, 1512
GsuI CTGGAG 1 cut(s) 1059
HaeIII GGCC 4 cut(s) 5, 139, 246, 310
HapII CCGG 2 cut(s) 318, 757
HhaI GCGC 1 cut(s) 1336
Hin1II CATG 5 cut(s) 49, 404, 505, 1118, 1502
Hin6I GCGC 1 cut(s) 1334
HinP1I GCGC 1 cut(s) 1334
HincII GTYRAC 1 cut(s) 1459
HindII GTYRAC 1 cut(s) 1459
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 5 cut(s) 170, 422, 545, 993, 1505
HpaII CCGG 2 cut(s) 318, 757
HphI GGTGA 2 cut(s) 945, 970
Hpy166II GTNNAC 3 cut(s) 632, 1459, 1490
Hpy188III TCNNGA 7 cut(s) 296, 450, 757, 894, 1076, 1255, 1523
Hpy8I GTNNAC 3 cut(s) 632, 1459, 1490
Hpy99I CGWCG 1 cut(s) 1341
HpyAV CCTTC 5 cut(s) 293, 621, 696, 782, 837
HpyCH4III ACNGT 5 cut(s) 212, 746, 1196, 1328, 1456
HpyCH4IV ACGT 2 cut(s) 709, 926
HpyF10VI GCNNNNNNNGC 8 cut(s) 488, 710, 844, 875, 896, 1280, 1434, 1517
HpyF3I CTNAG 8 cut(s) 127, 690, 839, 879, 920, 1231, 1424, 1429
HpySE526I ACGT 2 cut(s) 709, 926
Hsp92II CATG 5 cut(s) 49, 404, 505, 1118, 1502
HspAI GCGC 1 cut(s) 1334
Kpn2I TCCGGA 1 cut(s) 756
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 2 cut(s) 397, 934
LmnI GCTCC 3 cut(s) 367, 1033, 1149
Lsp1109I GCAGC 9 cut(s) 250, 494, 665, 881, 886, 1037, 1283, 1343, 1498
LweI GCATC 5 cut(s) 345, 421, 500, 899, 1270
MaeI CTAG 5 cut(s) 495, 894, 1175, 1277, 1419
MaeII ACGT 2 cut(s) 709, 926
MaeIII GTNAC 2 cut(s) 588, 1366
MalI GATC 2 cut(s) 399, 936
MboI GATC 2 cut(s) 397, 934
MboII GAAGA 5 cut(s) 29, 165, 244, 452, 1324
MhlI GDGCHC 2 cut(s) 634, 1109
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 5 cut(s) 523, 1043, 1110, 1259, 1442
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 3 cut(s) 431, 987, 1514
MmeI TCCRAC 1 cut(s) 1383
Mox20I TGGCCA 1 cut(s) 246
MroI TCCGGA 1 cut(s) 756
MscI TGGCCA 1 cut(s) 246
MseI TTAA 8 cut(s) 468, 521, 641, 741, 1034, 1046, 1055, 1157
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 3 cut(s) 485, 656, 1381
MspI CCGG 2 cut(s) 318, 757
MspR9I CCNGG 3 cut(s) 18, 318, 825
Mva1269I GAATGC 2 cut(s) 178, 840
MvaI CCWGG 2 cut(s) 18, 825
MvnI CGCG 1 cut(s) 1336
MwoI GCNNNNNNNGC 8 cut(s) 488, 710, 844, 875, 896, 1280, 1434, 1517
NciI CCSGG 1 cut(s) 318
NdeII GATC 2 cut(s) 397, 934
NlaIII CATG 5 cut(s) 49, 404, 505, 1118, 1502
NlaIV GGNNCC 2 cut(s) 341, 369
NmuCI GTSAC 1 cut(s) 1366
NspI RCATGY 1 cut(s) 505
PaeR7I CTCGAG 1 cut(s) 448
PctI GAATGC 2 cut(s) 178, 840
PfeI GAWTC 2 cut(s) 170, 545
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 9 cut(s) 240, 484, 655, 871, 901, 1027, 1273, 1333, 1513
PleI GAGTC 3 cut(s) 430, 987, 1513
PpsI GAGTC 3 cut(s) 430, 987, 1513
PshAI GACNNNNGTC 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 16, 823
PspGI CCWGG 2 cut(s) 16, 823
PspN4I GGNNCC 2 cut(s) 341, 369
PvuII CAGCTG 3 cut(s) 485, 656, 1381
RsaI GTAC 3 cut(s) 24, 500, 925
RsaNI GTAC 3 cut(s) 23, 499, 924
SaqAI TTAA 8 cut(s) 468, 521, 641, 741, 1034, 1046, 1055, 1157
SatI GCNGC 9 cut(s) 239, 483, 654, 870, 900, 1026, 1272, 1332, 1512
Sau3AI GATC 2 cut(s) 397, 934
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 3 cut(s) 431, 987, 1514
ScrFI CCNGG 3 cut(s) 18, 318, 825
SduI GDGCHC 2 cut(s) 634, 1109
SfaNI GCATC 5 cut(s) 345, 421, 500, 899, 1270
Sfr274I CTCGAG 1 cut(s) 448
SlaI CTCGAG 1 cut(s) 448
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SpeI ACTAGT 1 cut(s) 1418
Sse9I AATT 5 cut(s) 523, 1043, 1110, 1259, 1442
SspI AATATT 1 cut(s) 1021
SspMI CTAG 5 cut(s) 495, 894, 1175, 1277, 1419
StyD4I CCNGG 3 cut(s) 16, 316, 823
TaaI ACNGT 5 cut(s) 212, 746, 1196, 1328, 1456
TaiI ACGT 2 cut(s) 712, 929
TaqI TCGA 9 cut(s) 53, 182, 449, 515, 602, 662, 1083, 1152, 1524
TaqII GACCGA 1 cut(s) 69
TasI AATT 5 cut(s) 523, 1043, 1110, 1259, 1442
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 2 cut(s) 170, 545
Tru1I TTAA 8 cut(s) 468, 521, 641, 741, 1034, 1046, 1055, 1157
Tru9I TTAA 8 cut(s) 468, 521, 641, 741, 1034, 1046, 1055, 1157
TscAI CASTG 4 cut(s) 217, 1201, 1333, 1444
TseFI GTSAC 1 cut(s) 1366
TseI GCWGC 9 cut(s) 238, 482, 653, 869, 899, 1025, 1271, 1331, 1511
Tsp45I GTSAC 1 cut(s) 1366
TspDTI ATGAA 5 cut(s) 62, 627, 1103, 1251, 1283
TspGWI ACGGA 1 cut(s) 1354
TspRI CASTG 4 cut(s) 217, 1201, 1333, 1444
VneI GTGCAC 1 cut(s) 630
XagI CCTNNNNNAGG 2 cut(s) 144, 200
XapI RAATTY 2 cut(s) 523, 1259
XbaI TCTAGA 1 cut(s) 893
XceI RCATGY 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 448
XspI CTAG 5 cut(s) 495, 894, 1175, 1277, 1419
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.