RchiOBHm_Chr2g0151721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014212
Physical Location & Seq
Reverse (-)
69288687 .. 69290935
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGCAGTCGAAACCACAAGGTGTCATGGCTTCTAATAATTTGCAGCAGCAAGGAAGCAAAAATGTTCAGACTGGACGGCCCCAAAATATTCTCACCTTAAGCTTGACTACAGGTACAACCTTGGAAGAGTTTAAATTTGGATTCCCATCTGAAGGTTTATCAACTGCATCCAATAGATGGTGGGGAAGCAATAGCCCTAATTGTGATGAGGGCGTCCATGGAGAAGCAGCTAAGAGTGATGAAGGCAACAAACATCAGTCTGTCAAATTAGCAGATGATAGTGCAAGTTCAATTACAGGGAACAAAGAGAAATGTGAAAGTGAAAAAGAAGAGAGCAGCATTGATCCACAAGGGACAGATTTATTGGTGGCCGTGAGAAAAAGAGCGGTGGAAGAAGGGAAACAGGCACTTAAGCTTGGTGCATTCCGTGGATATGGTGCAAAGAAGCTAGGGAGAAAGGAGAGGACATTGCTTCTCCGAATATTCAAATCTTCAATGCCAAAAGATTGGATACCTGACTCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RWP-RK

Protein Analysis

175

Amino Acids

19.04

Weight (kDa)

8.85

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06500 AT1G06500 AT1G06500 AT1G06500
fragaria_vesca FvH4_6g38470 FvH4_6g38482
malus_domestica MD17G1137700.v1.1
prunus_persica Prupe.3G174900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151721
rosa_laevigata RLG00000020574
rosa_roxburghii Rroxscaffold_2G00096200
rosa_rugosa Rorug02G0428400
rosa_samantha Rh2AG489500 Rh2BG501900 Rh2CG475700 Rh2DG513000
rosa_wichuraiana Rw2G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 386
AciI CCGC 1 cut(s) 386
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 152, 177
AflII CTTAAG 2 cut(s) 97, 410
AgsI TTSAA 3 cut(s) 291, 487, 495
AluBI AGCT 4 cut(s) 102, 230, 415, 448
AluI AGCT 4 cut(s) 102, 230, 415, 448
AlwI GGATC 1 cut(s) 338
AoxI GGCC 2 cut(s) 77, 369
ApeKI GCWGC 4 cut(s) 43, 46, 227, 336
ApoI RAATTY 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 85
BbvI GCAGC 4 cut(s) 55, 58, 239, 348
BccI CCATC 2 cut(s) 154, 171
BceAI ACGGC 2 cut(s) 92, 356
BciVI GTATCC 1 cut(s) 504
BfaI CTAG 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 108
BfrI CTTAAG 2 cut(s) 97, 410
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 4 cut(s) 44, 47, 228, 337
BlsI GCNGC 4 cut(s) 45, 48, 229, 338
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 80
BmsI GCATC 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 120, 217, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 177
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 145
BseDI CCNNGG 3 cut(s) 120, 217, 427
BseGI GGATG 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 152, 177
BseMI GCAATG 1 cut(s) 467
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 511
BseXI GCAGC 4 cut(s) 55, 58, 239, 348
BshFI GGCC 2 cut(s) 79, 371
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 152, 177
BsmFI GGGAC 1 cut(s) 367
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 2 cut(s) 79, 371
Bsp143I GATC 1 cut(s) 343
Bsp19I CCATGG 1 cut(s) 217
BspACI CCGC 1 cut(s) 386
BspANI GGCC 2 cut(s) 79, 371
BspLI GGNNCC 1 cut(s) 80
BspPI GGATC 1 cut(s) 338
BspTI CTTAAG 2 cut(s) 97, 410
BsrBI CCGCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 467
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 3 cut(s) 120, 217, 427
BssMI GATC 1 cut(s) 343
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 120, 217
Bst6I CTCTTC 2 cut(s) 120, 324
BstACI GRCGYC 1 cut(s) 213
BstAFI CTTAAG 2 cut(s) 97, 410
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 2 cut(s) 217, 427
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 4 cut(s) 55, 58, 239, 348
BstXI CCANNNNNNTGG 1 cut(s) 507
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 2 cut(s) 79, 371
BtgI CCRYGG 2 cut(s) 217, 427
BtsCI GGATG 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 78
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 25, 218
CviJI RGCY 8 cut(s) 29, 79, 102, 195, 230, 371, 415, 448
CviKI_1 RGCY 8 cut(s) 29, 79, 102, 195, 230, 371, 415, 448
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
DraI TTTAAA 1 cut(s) 133
DraIII CACNNNGTG 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 120, 324
EarI CTCTTC 2 cut(s) 120, 324
Eco130I CCWWGG 2 cut(s) 120, 217
Eco57I CTGAAG 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 120, 217
ErhI CCWWGG 2 cut(s) 120, 217
FaeI CATG 2 cut(s) 28, 221
FaiI YATR 3 cut(s) 26, 219, 435
FaqI GGGAC 1 cut(s) 367
FatI CATG 2 cut(s) 24, 217
Fnu4HI GCNGC 4 cut(s) 44, 47, 228, 337
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 4 cut(s) 44, 47, 228, 337
FspBI CTAG 1 cut(s) 449
GluI GCNGC 4 cut(s) 44, 47, 228, 337
HaeIII GGCC 2 cut(s) 79, 371
HgaI GACGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 2 cut(s) 28, 221
HindIII AAGCTT 2 cut(s) 100, 413
HinfI GANTC 2 cut(s) 141, 518
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 69, 151, 479
HpyAV CCTTC 3 cut(s) 146, 236, 389
HpyCH4V TGCA 6 cut(s) 4, 43, 167, 284, 422, 440
HpyF3I CTNAG 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 28, 221
Kzo9I GATC 1 cut(s) 343
LpnPI CCDG 4 cut(s) 57, 96, 282, 389
Lsp1109I GCAGC 4 cut(s) 55, 58, 239, 348
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 449
MalI GATC 1 cut(s) 345
MbiI CCGCTC 1 cut(s) 386
MboI GATC 1 cut(s) 343
MboII GAAGA 4 cut(s) 137, 341, 404, 483
MluCI AATT 5 cut(s) 37, 134, 199, 266, 291
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 2 cut(s) 202, 456
MseI TTAA 4 cut(s) 98, 132, 411, 526
MspCI CTTAAG 2 cut(s) 97, 410
Mva1269I GAATGC 1 cut(s) 422
NcoI CCATGG 1 cut(s) 217
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 28, 221
NlaIV GGNNCC 1 cut(s) 80
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 4 cut(s) 45, 48, 229, 338
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 4 cut(s) 98, 132, 411, 526
SatI GCNGC 4 cut(s) 44, 47, 228, 337
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 512
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 1 cut(s) 108
SmlI CTYRAG 2 cut(s) 97, 410
SmoI CTYRAG 2 cut(s) 97, 410
Sse9I AATT 5 cut(s) 37, 134, 199, 266, 291
SsiI CCGC 1 cut(s) 386
SspI AATATT 2 cut(s) 88, 483
SspMI CTAG 1 cut(s) 449
StyI CCWWGG 2 cut(s) 120, 217
TaqI TCGA 1 cut(s) 8
TasI AATT 5 cut(s) 37, 134, 199, 266, 291
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 4 cut(s) 98, 132, 411, 526
Tru9I TTAA 4 cut(s) 98, 132, 411, 526
TseI GCWGC 4 cut(s) 43, 46, 227, 336
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 416
Van91I CCANNNNNTGG 1 cut(s) 177
Vha464I CTTAAG 2 cut(s) 97, 410
XapI RAATTY 1 cut(s) 134
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.