RchiOBHm_Chr2g0170391

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014084
Physical Location & Seq
Reverse (-)
84305723 .. 84307075
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
ATGATGGGCGGCCCTTACTACAACGTCCCCCTCGGCCGCCGCGACGGCAAGTCGTCCCGCGCCGCCGCCGTCGAGGGCACCCTGCCCCGACCCGCCATGCCCGTCTCCCAGCTCATCCGGGTCTTCGGATCCAGAGGCTTCTCGGTTCAGGAAATGGTCGCCCTCAGCGGGGCCCACACCATCGGATTCTCCCACTGTACGGAGTTCACCGCGGCGATCTACAACTACAGCCGGGAGTCGCAGTCCGACCCGGAGTACAACCCGAGATACGCGGCCGGGTTGCGGAATGCATGCGCCGATGTCCAGAAGAACCCGACTCTGTCGGTGTTTAACGACGTCATGACGCCGAACAAGTTCGACAATGCGTATTTCCAGAACCTTCCTAAGGGATTGGGGCTGTTGAAGTCGGATCATGCTCTGTTTAACGACCCGAGAACTAGGCCGTTTGTGGAGCTTTATGCCAAGGATCAGAACAGCTTCTTCTACGCGTTTGCGAGAGCCATGGAGAAGTTGAGTGTGTATGGGATTCAGACTGGGAGGAAAGGAGAGATTAGGCACAGATGCGATGAGTTTAATTAA

Protein Analysis

192

Amino Acids

21.5

Weight (kDa)

9.15

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 1 - 156 1.5e-47 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28200 AT5G40150
fragaria_vesca FvH4_6g50150 FvH4_6g50150
malus_domestica MD09G1039100.v1.1 MD17G1040100.v1.1
prunus_persica Prupe.3G278900_v2.0.a1
pyrus_communis pycom111g03080
rosa_chinensis RchiOBHm_Chr2g0170391
rosa_laevigata RLG00000021953
rosa_multiflora Rmu_sc0011601.1_g000014
rosa_rugosa Rorug02G0548700
rosa_samantha Rh2AG620200 Rh2BG631100 Rh2CG601000 Rh2DG644100
rosa_wichuraiana Rw2G051400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 77
AccII CGCG 5 cut(s) 42, 60, 212, 272, 488
AclWI GGATC 4 cut(s) 123, 136, 417, 474
AcoI YGGCCR 2 cut(s) 34, 273
AcyI GRCGYC 2 cut(s) 336, 344
AfaI GTAC 2 cut(s) 199, 257
AfiI CCNNNNNNNGG 5 cut(s) 168, 169, 199, 282, 385
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 1 cut(s) 403
AhdI GACNNNNNGTC 1 cut(s) 49
AluBI AGCT 3 cut(s) 112, 454, 477
AluI AGCT 3 cut(s) 112, 454, 477
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 4 cut(s) 123, 136, 417, 474
Ama87I CYCGRG 2 cut(s) 262, 430
AoxI GGCC 5 cut(s) 10, 34, 171, 273, 440
ApaI GGGCCC 1 cut(s) 175
Asp700I GAANNNNTTC 2 cut(s) 353, 476
AspLEI GCGC 2 cut(s) 62, 296
AspS9I GGNCC 3 cut(s) 11, 171, 172
AsuC2I CCSGG 4 cut(s) 119, 233, 251, 277
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 2 cut(s) 262, 430
AxyI CCTNAGG 1 cut(s) 384
BaeGI GKGCMC 2 cut(s) 80, 175
BamHI GGATCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 115
BbvCI CCTCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 188
BceAI ACGGC 3 cut(s) 53, 61, 427
BcnI CCSGG 4 cut(s) 119, 233, 251, 277
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 45
BisI GCNGC 7 cut(s) 10, 37, 40, 63, 66, 213, 273
BlsI GCNGC 7 cut(s) 11, 38, 41, 64, 67, 214, 274
Bme1390I CCNGG 4 cut(s) 119, 233, 251, 277
BmeRI GACNNNNNGTC 1 cut(s) 49
BmeT110I CYCGRG 2 cut(s) 262, 430
BmgT120I GGNCC 3 cut(s) 11, 171, 172
BmiI GGNNCC 4 cut(s) 79, 130, 172, 173
BmrFI CCNGG 4 cut(s) 119, 233, 251, 277
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 1 cut(s) 551
BmuI ACTGGG 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 164
BpuMI CCSGG 4 cut(s) 119, 233, 251, 277
BsaHI GRCGYC 2 cut(s) 336, 344
BsaJI CCNNGG 4 cut(s) 31, 210, 462, 501
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 169, 199, 282, 385
Bse1I ACTGG 1 cut(s) 538
Bse21I CCTNAGG 1 cut(s) 384
BseDI CCNNGG 4 cut(s) 31, 210, 462, 501
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 5 cut(s) 168, 169, 199, 282, 385
BseMII CTCAG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 538
BseSI GKGCMC 2 cut(s) 80, 175
BseX3I CGGCCG 2 cut(s) 34, 273
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 5 cut(s) 42, 60, 212, 272, 488
Bsh1285I CGRYCG 2 cut(s) 37, 276
BshFI GGCC 5 cut(s) 12, 36, 173, 275, 442
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 2 cut(s) 37, 276
BsiHKCI CYCGRG 2 cut(s) 262, 430
BsiSI CCGG 4 cut(s) 118, 232, 251, 276
BslFI GGGAC 2 cut(s) 11, 40
BslI CCNNNNNNNGG 5 cut(s) 168, 169, 199, 282, 385
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 11, 40
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 5 cut(s) 12, 36, 173, 275, 442
BsoBI CYCGRG 2 cut(s) 262, 430
Bsp120I GGGCCC 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 80, 175
Bsp143I GATC 4 cut(s) 128, 216, 409, 466
Bsp19I CCATGG 1 cut(s) 501
BspANI GGCC 5 cut(s) 12, 36, 173, 275, 442
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 5 cut(s) 42, 60, 212, 272, 488
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 4 cut(s) 79, 130, 172, 173
BspPI GGATC 4 cut(s) 123, 136, 417, 474
BspT107I GGYRCC 1 cut(s) 77
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 4 cut(s) 31, 210, 462, 501
BssMI GATC 4 cut(s) 128, 216, 409, 466
BssNI GRCGYC 2 cut(s) 336, 344
BssT1I CCWWGG 2 cut(s) 462, 501
Bst4CI ACNGT 1 cut(s) 197
BstACI GRCGYC 2 cut(s) 336, 344
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 164, 384
BstDSI CCRYGG 2 cut(s) 210, 501
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 5 cut(s) 42, 60, 212, 272, 488
BstHHI GCGC 2 cut(s) 62, 296
BstKTI GATC 4 cut(s) 131, 219, 412, 469
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 4 cut(s) 128, 216, 409, 466
BstMCI CGRYCG 2 cut(s) 37, 276
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 4 cut(s) 117, 231, 249, 275
BstSFI CTRYAG 1 cut(s) 226
BstSLI GKGCMC 2 cut(s) 80, 175
BstUI CGCG 5 cut(s) 42, 60, 212, 272, 488
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BstZI CGGCCG 2 cut(s) 34, 273
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 5 cut(s) 12, 36, 173, 275, 442
BtgI CCRYGG 2 cut(s) 210, 501
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 292
CciI TCATGA 1 cut(s) 339
CfoI GCGC 2 cut(s) 62, 296
Cfr13I GGNCC 3 cut(s) 11, 171, 172
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 198, 256
CviAII CATG 5 cut(s) 97, 291, 340, 413, 502
CviQI GTAC 2 cut(s) 198, 256
DdeI CTNAG 2 cut(s) 164, 384
DpnI GATC 4 cut(s) 130, 218, 411, 468
DpnII GATC 4 cut(s) 128, 216, 409, 466
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 2 cut(s) 34, 273
EagI CGGCCG 2 cut(s) 34, 273
Eam1105I GACNNNNNGTC 1 cut(s) 49
EclXI CGGCCG 2 cut(s) 34, 273
Eco130I CCWWGG 2 cut(s) 462, 501
Eco24I GRGCYC 1 cut(s) 175
Eco52I CGGCCG 2 cut(s) 34, 273
Eco81I CCTNAGG 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 262, 430
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 462, 501
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 2 cut(s) 462, 501
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 5 cut(s) 100, 294, 343, 416, 505
FaiI YATR 7 cut(s) 98, 292, 341, 414, 459, 503, 522
FaqI GGGAC 2 cut(s) 11, 40
FatI CATG 5 cut(s) 96, 290, 339, 412, 501
FauI CCCGC 3 cut(s) 65, 100, 161
Fnu4HI GCNGC 7 cut(s) 10, 37, 40, 63, 66, 213, 273
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 7 cut(s) 10, 37, 40, 63, 66, 213, 273
FspBI CTAG 1 cut(s) 438
GlaI GCGC 2 cut(s) 61, 295
GluI GCNGC 7 cut(s) 10, 37, 40, 63, 66, 213, 273
GsaI CCCAGC 1 cut(s) 112
HaeIII GGCC 5 cut(s) 12, 36, 173, 275, 442
HapII CCGG 4 cut(s) 118, 232, 251, 276
HgaI GACGC 1 cut(s) 352
HhaI GCGC 2 cut(s) 62, 296
Hin1I GRCGYC 2 cut(s) 336, 344
Hin1II CATG 5 cut(s) 100, 294, 343, 416, 505
Hin6I GCGC 2 cut(s) 60, 294
HinP1I GCGC 2 cut(s) 60, 294
HinfI GANTC 4 cut(s) 186, 236, 316, 526
HpaII CCGG 4 cut(s) 118, 232, 251, 276
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 6 cut(s) 128, 185, 247, 409, 471, 531
Hpy188III TCNNGA 5 cut(s) 132, 149, 304, 340, 373
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 3 cut(s) 47, 74, 338
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 2 cut(s) 24, 336
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 2 cut(s) 164, 384
HpySE526I ACGT 2 cut(s) 24, 336
Hsp92I GRCGYC 2 cut(s) 336, 344
Hsp92II CATG 5 cut(s) 100, 294, 343, 416, 505
HspAI GCGC 2 cut(s) 60, 294
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 4 cut(s) 128, 216, 409, 466
LmnI GCTCC 1 cut(s) 451
LweI GCATC 1 cut(s) 551
MaeI CTAG 1 cut(s) 438
MaeII ACGT 2 cut(s) 24, 336
MalI GATC 4 cut(s) 130, 218, 411, 468
MboI GATC 4 cut(s) 128, 216, 409, 466
MboII GAAGA 3 cut(s) 115, 319, 472
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 80, 175
MluCI AATT 1 cut(s) 574
MluI ACGCGT 1 cut(s) 486
MlyI GAGTC 2 cut(s) 245, 310
MmeI TCCRAC 2 cut(s) 270, 387
MnlI CCTC 5 cut(s) 41, 67, 128, 173, 531
Mph1103I ATGCAT 1 cut(s) 292
MroXI GAANNNNTTC 2 cut(s) 353, 476
MseI TTAA 4 cut(s) 330, 423, 573, 577
MspA1I CMGCKG 2 cut(s) 168, 212
MspI CCGG 4 cut(s) 118, 232, 251, 276
MspR9I CCNGG 4 cut(s) 119, 233, 251, 277
Mva1269I GAATGC 1 cut(s) 292
MvnI CGCG 5 cut(s) 42, 60, 212, 272, 488
MwoI GCNNNNNNNGC 1 cut(s) 45
NciI CCSGG 4 cut(s) 119, 233, 251, 277
NcoI CCATGG 1 cut(s) 501
NdeII GATC 4 cut(s) 128, 216, 409, 466
NlaIII CATG 5 cut(s) 100, 294, 343, 416, 505
NlaIV GGNNCC 4 cut(s) 79, 130, 172, 173
NmeAIII GCCGAG 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 1 cut(s) 294
PacI TTAATTAA 1 cut(s) 577
PaeI GCATGC 1 cut(s) 294
PagI TCATGA 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 292
PdmI GAANNNNTTC 2 cut(s) 353, 476
PfeI GAWTC 2 cut(s) 186, 526
PflFI GACNNNGTC 1 cut(s) 319
PkrI GCNGC 7 cut(s) 11, 38, 41, 64, 67, 214, 274
PleI GAGTC 2 cut(s) 244, 310
PpsI GAGTC 2 cut(s) 244, 310
PspFI CCCAGC 1 cut(s) 108
PspN4I GGNNCC 4 cut(s) 79, 130, 172, 173
PspOMI GGGCCC 1 cut(s) 171
PspPI GGNCC 3 cut(s) 11, 171, 172
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 319
RsaI GTAC 2 cut(s) 199, 257
RsaNI GTAC 2 cut(s) 198, 256
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 4 cut(s) 330, 423, 573, 577
SatI GCNGC 7 cut(s) 10, 37, 40, 63, 66, 213, 273
Sau3AI GATC 4 cut(s) 128, 216, 409, 466
Sau96I GGNCC 3 cut(s) 11, 171, 172
SchI GAGTC 2 cut(s) 245, 310
ScrFI CCNGG 4 cut(s) 119, 233, 251, 277
SduI GDGCHC 2 cut(s) 80, 175
SetI ASST 6 cut(s) 27, 114, 339, 381, 456, 479
SfaNI GCATC 1 cut(s) 551
SfcI CTRYAG 1 cut(s) 226
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
SphI GCATGC 1 cut(s) 294
Sse9I AATT 1 cut(s) 574
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 4 cut(s) 117, 231, 249, 275
StyI CCWWGG 2 cut(s) 462, 501
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 2 cut(s) 27, 339
TaqI TCGA 2 cut(s) 72, 357
TasI AATT 1 cut(s) 574
TatI WGTACW 1 cut(s) 255
TauI GCSGC 7 cut(s) 12, 39, 42, 65, 68, 215, 275
TfiI GAWTC 2 cut(s) 186, 526
Tru1I TTAA 4 cut(s) 330, 423, 573, 577
Tru9I TTAA 4 cut(s) 330, 423, 573, 577
TscAI CASTG 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 200
Tth111I GACNNNGTC 1 cut(s) 319
XagI CCTNNNNNAGG 1 cut(s) 383
XceI RCATGY 1 cut(s) 294
XmnI GAANNNNTTC 2 cut(s) 353, 476
XspI CTAG 1 cut(s) 438
ZraI GACGTC 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.