RchiOBHm_Chr2g0174381

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018969
Physical Location & Seq
Forward (+)
86969897 .. 86971159
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGTTTAAGTACGACAGTGTTCATGGGCAGTGGAAGCATGGCGAGCTTAAGGTTAAGGATGAAAGCACACTTCTCTTGGGTGATAAGCCCGTTAAAGTTTTTGATTCTAGGGAAGAATCTGAGGGTAACCTAAAGGGAATCCTCGGATATATGGACGATGATTTAGTGTCCACTGACTTTGTGGATAACCACAGGTCAAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCGCGTGGTATGACAATGAATGGGGTTACAGCTCACGAGTCATCGACTTGATCTGTCACATGGCCACAGTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

109

Amino Acids

12.39

Weight (kDa)

4.89

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_C PF02800 38 - 88 1.5e-13 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018969)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174381
rosa_multiflora Rmu_sc0003314.1_g000002 Rmu_sc0010418.1_g000004
rosa_roxburghii Rroxscaffold_3G00260290
rosa_rugosa Rorug07G0025100
rosa_samantha Rh7AG152700 Rh7BG154200 Rh7CG157800 Rh7DG153600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 315
AfaI GTAC 1 cut(s) 11
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 3 cut(s) 46, 250, 285
AluI AGCT 3 cut(s) 46, 250, 285
AoxI GGCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 92
BalI TGGCCA 1 cut(s) 317
BauI CACGAG 1 cut(s) 288
BfaI CTAG 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 47
BmsI GCATC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 142, 213
BseDI CCNNGG 2 cut(s) 142, 213
BseGI GGATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 317
BsnI GGCC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 303
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 1 cut(s) 257
BspTI CTTAAG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 142, 213
BssMI GATC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 17, 322
BstAFI CTTAAG 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 120
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 1 cut(s) 306
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 34, 43, 224
BstPI GGTNACC 1 cut(s) 125
BstUI CGCG 1 cut(s) 257
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 35
BtsIMutI CAGTG 3 cut(s) 22, 35, 171
Cac8I GCNNGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 4 cut(s) 23, 38, 313, 327
CviJI RGCY 6 cut(s) 46, 88, 218, 250, 285, 317
CviKI_1 RGCY 6 cut(s) 46, 88, 218, 250, 285, 317
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 213
Eco91I GGTNACC 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 4 cut(s) 26, 41, 316, 330
FaiI YATR 7 cut(s) 24, 39, 150, 152, 264, 314, 328
FatI CATG 4 cut(s) 22, 37, 312, 326
FokI GGATG 1 cut(s) 71
FspBI CTAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 317
Hin1II CATG 4 cut(s) 26, 41, 316, 330
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 4 cut(s) 104, 116, 138, 291
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 121, 146
Hpy188III TCNNGA 1 cut(s) 288
Hpy8I GTNNAC 1 cut(s) 171
HpyCH4III ACNGT 2 cut(s) 17, 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 43, 224
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 4 cut(s) 26, 41, 316, 330
Kzo9I GATC 1 cut(s) 303
LpnPI CCDG 2 cut(s) 178, 204
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 4 cut(s) 125, 278, 308, 322
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 1 cut(s) 300
MnlI CCTC 2 cut(s) 115, 152
Mox20I TGGCCA 1 cut(s) 317
MscI TGGCCA 1 cut(s) 317
MseI TTAA 4 cut(s) 6, 48, 54, 93
Msp20I TGGCCA 1 cut(s) 317
MspCI CTTAAG 1 cut(s) 47
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 3 cut(s) 34, 43, 224
NdeII GATC 1 cut(s) 303
NlaIII CATG 4 cut(s) 26, 41, 316, 330
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 3 cut(s) 104, 116, 138
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PspEI GGTNACC 1 cut(s) 125
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 4 cut(s) 6, 48, 54, 93
Sau3AI GATC 1 cut(s) 303
SchI GAGTC 1 cut(s) 300
SetI ASST 6 cut(s) 48, 54, 132, 197, 252, 287
SfaNI GCATC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 222
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 17, 322
TaqI TCGA 2 cut(s) 207, 297
TasI AATT 1 cut(s) 222
TfiI GAWTC 3 cut(s) 104, 116, 138
Tru1I TTAA 4 cut(s) 6, 48, 54, 93
Tru9I TTAA 4 cut(s) 6, 48, 54, 93
TscAI CASTG 3 cut(s) 22, 35, 178
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 11, 75, 285
TspRI CASTG 3 cut(s) 22, 35, 178
Vha464I CTTAAG 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.