Rh7BG154200

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018969
Physical Location & Seq
Reverse (-)
11437911 .. 11442994
5084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG154200.1

Sequence Viewer

Length: 612 bp
ATGGATAGAAGGGGCGAGTTTCGCGTTGTCACTAGCCGTTCGAGGCAGCATAACCGCAGGATTGAAAGGGAAGAGGCGGACTTGCAAGAACATGCCGATGAGCAAACCTGCTATGCTGTCGACCAGAGACGCGAGCTGGCTGCATTGTTGGGGAGTGAGTCTCCAGATGTGGAAGACCGCTATGTGCCAAAGATTCGAATCGTTGTCCATTGTTGGAATAGGCTGGGAAGAATGGCTGCAAGGTTGGCTCTCTTGAACGAAACTATCATGCTTGTAGCGCAATTCACAAGACTTCTGACTTCGAGCACATTACATTGCAAGAAATGGGTCATTGAGCAGGAGGATGCTATTGTGTTTGGGAACAAGTATGTCATTGTTATGACCATCAGGCAAGAGTCTGATGGAGAGCTCAATGGAATCCTCAGATTCCGTGATGATCAGATTATGTCATCTTACCTCATTGGTGACAAGAGGTCCTGCATCTTTGATGCCCAATCTGGTACTGCAACGAGCAATAGATTTTTCAATCTTGTAGCCTGGTGCGACATGGAATGGGGTTTCTGTTCTGGTATGATGGACTTCATTTCATACATGGATTCACATCGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

203

Amino Acids

23.65

Weight (kDa)

5.98

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_C PF02800 125 - 181 7.2e-07 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018969)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174381
rosa_multiflora Rmu_sc0003314.1_g000002 Rmu_sc0010418.1_g000004
rosa_roxburghii Rroxscaffold_3G00260290
rosa_rugosa Rorug07G0025100
rosa_samantha Rh7AG152700 Rh7BG154200 Rh7CG157800 Rh7DG153600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 120
AccII CGCG 3 cut(s) 24, 132, 606
AciI CCGC 3 cut(s) 55, 77, 178
AfaI GTAC 1 cut(s) 502
AgsI TTSAA 3 cut(s) 65, 256, 526
AhdI GACNNNNNGTC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 2 cut(s) 136, 409
AluI AGCT 2 cut(s) 136, 409
Alw21I GWGCWC 2 cut(s) 308, 411
Alw26I GTCTC 2 cut(s) 121, 165
ApeKI GCWGC 3 cut(s) 46, 140, 236
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 474
AsuHPI GGTGA 1 cut(s) 476
AsuII TTCGAA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 474
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 308, 411
BbvI GCAGC 3 cut(s) 58, 127, 223
BccI CCATC 3 cut(s) 392, 395, 568
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 538
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 2 cut(s) 121, 165
BfaI CTAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 3 cut(s) 47, 141, 237
BlsI GCNGC 3 cut(s) 48, 142, 238
Bme1390I CCNGG 1 cut(s) 538
Bme18I GGWCC 1 cut(s) 474
BmeRI GACNNNNNGTC 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 538
BmsI GCATC 3 cut(s) 334, 478, 489
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 145, 177
BpmI CTGGAG 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 196
BsaBI GATNNNNATC 2 cut(s) 197, 600
Bse3DI GCAATG 1 cut(s) 313
Bse8I GATNNNNATC 2 cut(s) 197, 600
BseBI CCWGG 1 cut(s) 538
BseGI GGATG 1 cut(s) 349
BseJI GATNNNNATC 2 cut(s) 197, 600
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 436
BseXI GCAGC 3 cut(s) 58, 127, 223
BseYI CCCAGC 1 cut(s) 223
Bsh1236I CGCG 3 cut(s) 24, 132, 606
BsiHKAI GWGCWC 2 cut(s) 308, 411
BsmAI GTCTC 2 cut(s) 121, 165
BsmBI CGTCTC 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 308, 411
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 3 cut(s) 55, 77, 178
BspCNI CTCAG 1 cut(s) 435
BspFNI CGCG 3 cut(s) 24, 132, 606
BspMI ACCTGC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 313
BssMI GATC 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 134, 138
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 3 cut(s) 24, 132, 606
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 2 cut(s) 121, 165
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 3 cut(s) 21, 245, 277
BstNI CCWGG 1 cut(s) 538
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 536
BstUI CGCG 3 cut(s) 24, 132, 606
BstV1I GCAGC 3 cut(s) 58, 127, 223
BstV2I GAAGAC 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 587
BtsCI GGATG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 134, 138
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 474
CseI GACGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 501
CviAII CATG 4 cut(s) 92, 268, 547, 592
CviJI RGCY 8 cut(s) 36, 136, 140, 223, 236, 248, 409, 536
CviKI_1 RGCY 8 cut(s) 36, 136, 140, 223, 236, 248, 409, 536
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 1 cut(s) 422
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DriI GACNNNNNGTC 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 66
Eam1105I GACNNNNNGTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 409
EcoICRI GAGCTC 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 536
EcoT38I GRGCYC 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 4 cut(s) 95, 271, 550, 595
FatI CATG 4 cut(s) 91, 267, 546, 591
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 47, 141, 237
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 3 cut(s) 47, 141, 237
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 279
GluI GCNGC 3 cut(s) 47, 141, 237
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 147
HgaI GACGC 1 cut(s) 138
HhaI GCGC 1 cut(s) 280
Hin1II CATG 4 cut(s) 95, 271, 550, 595
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 7 cut(s) 158, 193, 198, 395, 417, 426, 596
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 4 cut(s) 297, 400, 425, 441
Hpy188III TCNNGA 2 cut(s) 164, 253
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 3
HpyCH4V TGCA 6 cut(s) 85, 143, 239, 318, 480, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 245, 277
HpyF3I CTNAG 1 cut(s) 422
Hsp92II CATG 4 cut(s) 95, 271, 550, 595
HspAI GCGC 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 1 cut(s) 436
Lsp1109I GCAGC 3 cut(s) 58, 127, 223
LweI GCATC 3 cut(s) 334, 478, 489
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 28, 464
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 3 cut(s) 83, 185, 240
MhlI GDGCHC 2 cut(s) 308, 411
MluCI AATT 1 cut(s) 281
MlyI GAGTC 2 cut(s) 167, 404
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 6 cut(s) 36, 67, 334, 431, 465, 467
MslI CAYNNNNRTG 2 cut(s) 96, 377
MspR9I CCNGG 1 cut(s) 538
MvaI CCWGG 1 cut(s) 538
MvnI CGCG 3 cut(s) 24, 132, 606
MwoI GCNNNNNNNGC 3 cut(s) 21, 245, 277
NdeII GATC 1 cut(s) 436
NlaIII CATG 4 cut(s) 95, 271, 550, 595
NmuCI GTSAC 2 cut(s) 28, 464
NspI RCATGY 1 cut(s) 95
NspV TTCGAA 1 cut(s) 196
PfeI GAWTC 5 cut(s) 193, 198, 417, 426, 596
PkrI GCNGC 3 cut(s) 48, 142, 238
PleI GAGTC 2 cut(s) 166, 403
PpsI GAGTC 2 cut(s) 166, 403
PpuMI RGGWCCY 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 411
Psp5II RGGWCCY 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 536
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 536
PspPI GGNCC 1 cut(s) 474
PspPPI RGGWCCY 1 cut(s) 474
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 2 cut(s) 96, 377
SacI GAGCTC 1 cut(s) 411
SalI GTCGAC 1 cut(s) 119
SatI GCNGC 3 cut(s) 47, 141, 237
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 2 cut(s) 167, 404
ScrFI CCNGG 1 cut(s) 538
SduI GDGCHC 2 cut(s) 308, 411
SetI ASST 6 cut(s) 110, 138, 245, 411, 459, 476
SfaNI GCATC 3 cut(s) 334, 478, 489
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 1 cut(s) 474
SmiMI CAYNNNNRTG 2 cut(s) 96, 377
Sse9I AATT 1 cut(s) 281
SsiI CCGC 3 cut(s) 55, 77, 178
SspMI CTAG 1 cut(s) 33
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 536
TaqI TCGA 4 cut(s) 41, 120, 196, 302
TasI AATT 1 cut(s) 281
TfiI GAWTC 5 cut(s) 193, 198, 417, 426, 596
TseFI GTSAC 2 cut(s) 28, 464
TseI GCWGC 3 cut(s) 46, 140, 236
Tsp45I GTSAC 2 cut(s) 28, 464
TspDTI ATGAA 2 cut(s) 571, 576
TspGWI ACGGA 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 474
XceI RCATGY 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.