Rh7AG152700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018969
Physical Location & Seq
Reverse (-)
12335743 .. 12336441
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG152700.1

Sequence Viewer

Length: 393 bp
ATGGATAGAAGGGGCGAGTTTCGCGTTGTCACTAGCCGTTCGAGGCAACATAATCGCATGGAGTTGTCATTGACAGGATTGAAAGGGAAGAGGCGGATTTGCAAGAACATGCCGATGAGCAAACCCGCTATGTTATCGACCAGAGATGCGCGCTGGCTGCATTGTTGGGGAGCTGGGAAGAATGGCCGCAAGGTTGACTCTCTTGAACAAAACTATCATGCTTGTAGCACAATTCACAAGACCTTCGACTTCGAGCACATTACATTGCAAGAAATGGTAGAATCCTTTGTGGATGATGAACCATGGGAGTCGGCTATTAGCAGGGTCATTGAGCAAGAGGATGATATTGTGTTTGGGAACAAGTATGTCACTGTTATGACCATCAGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.27

Weight (kDa)

8.86

Isoelectric Point (pI)

64.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018969)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0174381
rosa_multiflora Rmu_sc0003314.1_g000002 Rmu_sc0010418.1_g000004
rosa_roxburghii Rroxscaffold_3G00260290
rosa_rugosa Rorug07G0025100
rosa_samantha Rh7AG152700 Rh7BG154200 Rh7CG157800 Rh7DG153600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 24, 151
AciI CCGC 3 cut(s) 94, 126, 187
AcoI YGGCCR 1 cut(s) 184
AfaI GTAC 1 cut(s) 389
AgsI TTSAA 2 cut(s) 82, 206
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 258
AlwNI CAGNNNCTG 1 cut(s) 390
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 157
AspLEI GCGC 2 cut(s) 151, 153
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BfaI CTAG 1 cut(s) 33
BisI GCNGC 2 cut(s) 158, 187
BlsI GCNGC 2 cut(s) 159, 188
BmsI GCATC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 2 cut(s) 298, 346
BseMI GCAATG 1 cut(s) 263
BsePI GCGCGC 1 cut(s) 149
BseXI GCAGC 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 24, 151
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 258
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 258
Bsp19I CCATGG 1 cut(s) 302
BspACI CCGC 3 cut(s) 94, 126, 187
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 2 cut(s) 24, 151
BsrDI GCAATG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 302
BssHII GCGCGC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 151, 155
BstDSI CCRYGG 1 cut(s) 302
BstF5I GGATG 2 cut(s) 298, 346
BstFNI CGCG 2 cut(s) 24, 151
BstHHI GCGC 2 cut(s) 151, 153
BstMWI GCNNNNNNNGC 2 cut(s) 21, 157
BstNSI RCATGY 1 cut(s) 112
BstUI CGCG 2 cut(s) 24, 151
BstV1I GCAGC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 302
BtsCI GGATG 2 cut(s) 298, 346
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 2 cut(s) 151, 155
CaiI CAGNNNCTG 1 cut(s) 390
CfoI GCGC 2 cut(s) 151, 153
Csp6I GTAC 1 cut(s) 388
CviAII CATG 4 cut(s) 58, 109, 218, 303
CviJI RGCY 5 cut(s) 36, 157, 173, 186, 314
CviKI_1 RGCY 5 cut(s) 36, 157, 173, 186, 314
CviQI GTAC 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 4 cut(s) 61, 112, 221, 306
FaiI YATR 8 cut(s) 51, 59, 110, 131, 219, 304, 366, 377
FatI CATG 4 cut(s) 57, 108, 217, 302
FauI CCCGC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 158, 187
FokI GGATG 2 cut(s) 305, 353
Fsp4HI GCNGC 2 cut(s) 158, 187
FspBI CTAG 1 cut(s) 33
GlaI GCGC 2 cut(s) 150, 152
GluI GCNGC 2 cut(s) 158, 187
GsaI CCCAGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 186
HhaI GCGC 2 cut(s) 151, 153
Hin1II CATG 4 cut(s) 61, 112, 221, 306
Hin6I GCGC 2 cut(s) 149, 151
HinP1I GCGC 2 cut(s) 149, 151
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 3 cut(s) 197, 281, 308
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 3, 253
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4V TGCA 3 cut(s) 102, 160, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 157
Hsp92II CATG 4 cut(s) 61, 112, 221, 306
HspAI GCGC 2 cut(s) 149, 151
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 6 cut(s) 60, 139, 154, 159, 307, 370
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 28, 367
MboII GAAGA 2 cut(s) 100, 190
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 1 cut(s) 231
MlyI GAGTC 2 cut(s) 191, 317
MnlI CCTC 3 cut(s) 36, 84, 331
MslI CAYNNNNRTG 2 cut(s) 113, 374
MvnI CGCG 2 cut(s) 24, 151
MwoI GCNNNNNNNGC 2 cut(s) 21, 157
NcoI CCATGG 1 cut(s) 302
NlaIII CATG 4 cut(s) 61, 112, 221, 306
NmuCI GTSAC 2 cut(s) 28, 367
NspI RCATGY 1 cut(s) 112
PauI GCGCGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 2 cut(s) 159, 188
PleI GAGTC 2 cut(s) 191, 316
PpsI GAGTC 2 cut(s) 191, 316
PspFI CCCAGC 1 cut(s) 173
PstNI CAGNNNCTG 1 cut(s) 390
PteI GCGCGC 1 cut(s) 149
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 2 cut(s) 113, 374
SatI GCNGC 2 cut(s) 158, 187
SchI GAGTC 2 cut(s) 191, 317
SduI GDGCHC 1 cut(s) 258
SetI ASST 4 cut(s) 175, 195, 245, 389
SfaNI GCATC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 113, 374
Sse9I AATT 1 cut(s) 231
SsiI CCGC 3 cut(s) 94, 126, 187
SspMI CTAG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 373
TaqI TCGA 4 cut(s) 41, 137, 246, 252
TasI AATT 1 cut(s) 231
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 281
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 2 cut(s) 28, 367
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 2 cut(s) 28, 367
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 376
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.