Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003314.1

Orthogroup ID

OG0018969

Physical Location & Seq

Genomic Coordinates Reverse (-)

7233 .. 8301

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003314.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtttataattggtgtcaatcacagtgagtacactcctgatattgacgctgtgtcaattggtgaaccattgtttcactgctatgctcctcttgcaaaggttatcaacgagaagcttggaattgccttgggtcagtggaccattgttttcccggatgtggggcccaacattgttcctatgagatgtccatctggatctcccctgactgttcaaaactatctgccagttctcgacaggaaattgactggagtgaccttctatactcccgacccgcaacttctctacatatgtggaactatgtgtcatgcttcagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006006 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008886 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009651 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016491 GO:0016620 GO:0016903 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0022414 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032787 GO:0034285 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042493 GO:0042542 GO:0042579 GO:0042742 GO:0042866 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043891 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046677 GO:0046686 GO:0046700 GO:0046872 GO:0046914 GO:0046939 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0051775 GO:0055044 GO:0055086 GO:0055114 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

105

Amino Acids

11.52

Weight (kDa)

5.13

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018969)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0174381
rosa_multiflora	Rmu_sc0003314.1_g000002 Rmu_sc0010418.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260290
rosa_rugosa	Rorug07G0025100
rosa_samantha	Rh7AG152700 Rh7BG154200 Rh7CG157800 Rh7DG153600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	157, 158
AgsI	TTSAA	1 cut(s)	212
AhdI	GACNNNNNGTC	1 cut(s)	52
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	161
ApaI	GGGCCC	1 cut(s)	165
AspS9I	GGNCC	3 cut(s)	138, 161, 162
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	165
BccI	CCATC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	138
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgT120I	GGNCC	3 cut(s)	138, 161, 162
BmiI	GGNNCC	2 cut(s)	162, 163
BmrFI	CCNGG	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 158
Bse1I	ACTGG	2 cut(s)	224, 250
Bse8I	GATNNNNATC	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	157, 158
BseNI	ACTGG	2 cut(s)	224, 250
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	165
BshFI	GGCC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	157, 158
BsnI	GGCC	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	194
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	162, 163
BspPI	GGATC	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	224, 250
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	26, 208
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	3 cut(s)	31, 76, 140
Cfr13I	GGNCC	3 cut(s)	138, 161, 162
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	2 cut(s)	115, 163
CviKI_1	RGCY	2 cut(s)	115, 163
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	52
Eam1105I	GACNNNNNGTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	308
FaiI	YATR	8 cut(s)	8, 84, 179, 261, 287, 289, 299, 306
FatI	CATG	1 cut(s)	304
FauI	CCCGC	1 cut(s)	279
FauNDI	CATATG	1 cut(s)	287
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	113
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	33, 65, 138
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	4 cut(s)	38, 192, 230, 266
Hpy8I	GTNNAC	3 cut(s)	33, 65, 138
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	26, 208
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	7 cut(s)	51, 165, 177, 215, 220, 231, 237
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	4 cut(s)	9, 57, 120, 239
MnlI	CCTC	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	2 cut(s)	162, 163
NmuCI	GTSAC	1 cut(s)	250
PfoI	TCCNGGA	1 cut(s)	150
PsiI	TTATAA	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	162, 163
PspOMI	GGGCCC	1 cut(s)	161
PspPI	GGNCC	3 cut(s)	138, 161, 162
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	194
Sau96I	GGNCC	3 cut(s)	138, 161, 162
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	3 cut(s)	102, 117, 257
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	4 cut(s)	9, 57, 120, 239
SsiI	CCGC	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	26, 208
TaqI	TCGA	1 cut(s)	231
TasI	AATT	4 cut(s)	9, 57, 120, 239
TatI	WGTACW	1 cut(s)	30
TscAI	CASTG	3 cut(s)	31, 83, 140
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspRI	CASTG	3 cut(s)	31, 83, 140
VpaK11BI	GGWCC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.