RchiOBHm_Chr1g0324211

Belongs to the glycosyl hydrolase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019289
Physical Location & Seq
Forward (+)
11906649 .. 11911761
5113 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGGCTGCTTCTATGATGGGTCAACTGGTTTCTCCCTTAGAGAATGGACATCATGTGTGGGAGGACCAATCTTTCATCAAGTGGAACAAGAGAGATGCACATGTCACTTTACGTTGCCATGAATCAATTGAAGGTTCTCTTAAATACTGGTATGAACGCAGCAAAGTGAATTTTATGGTATCCAACTCTGCACCTTGGAATGATGATGCTGTTCCTGAAGCTCTTGATAGTGCAGCTCTTTGGATCAAGGGCTTGCCTTTTGTGGAGTCTTTGTCAGGCTATTGGAAATTTTACTTAGCTTCCACTCCTGGAAATGTTCCTTTGAATTTTTACCACACCGCATTTCAGGATTCTGTGTGGAAAACTTTGCCAGTGCAGATGCACGGATTTGATCGGCTTATATATACTAATGTTGTATATCCATTTCCACTTGATCAACCTTTTGTTCCTGTGGACAACCCTACTGGCTGCTATAGGACAGATTTTGTCATCCCCAAAGAATGGAAGGGTCGCAGAATTTTGTTGCACTTCGAAGCTGTCGATTCTGCCTTCTGTGCATGGATAAATGGAGTTCCTGTAGGATATAGTCAGGACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00600 ko01100 map00052 map00511 map00600 map01100
Pfam Domains
Protein Families
Bgal_small_N DUF4981 Glyco_hydro_2 Glyco_hydro_2_C Glyco_hydro_2_N

Protein Analysis

199

Amino Acids

22.84

Weight (kDa)

5.75

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_2_N PF02837 89 - 199 1.6e-24 Glycosyl hydrolases family 2, sugar binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019289)

Species Orthologous Gene IDs
malus_domestica MD07G1039900.v1.1 MD07G1040000.v1.1
rosa_chinensis RchiOBHm_Chr1g0324211
rosa_laevigata RLG00000030215
rosa_multiflora Rmu_sc0001850.1_g000039
rosa_samantha Rh1CG062400 Rh1CG062700 Rh1DG066500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 501
AciI CCGC 1 cut(s) 339
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 4 cut(s) 169, 287, 325, 516
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 501
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 2 cut(s) 131, 325
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 4 cut(s) 221, 236, 299, 536
AluI AGCT 4 cut(s) 221, 236, 299, 536
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 4 cut(s) 5, 159, 233, 468
ApoI RAATTY 4 cut(s) 169, 287, 325, 516
AspS9I GGNCC 1 cut(s) 64
AsuII TTCGAA 1 cut(s) 531
AvaII GGWCC 1 cut(s) 64
BbvI GCAGC 3 cut(s) 171, 245, 455
BccI CCATC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 190
BclI TGATCA 1 cut(s) 433
BfmI CTRYAG 2 cut(s) 472, 576
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 4 cut(s) 6, 160, 234, 469
BlsI GCNGC 4 cut(s) 7, 161, 235, 470
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 3 cut(s) 85, 196, 369
Bpu14I TTCGAA 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 4 cut(s) 257, 287, 561, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 501
Bse1I ACTGG 4 cut(s) 30, 152, 371, 469
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 501
BseNI ACTGG 4 cut(s) 30, 152, 371, 469
BseXI GCAGC 3 cut(s) 171, 245, 455
BsgI GTGCAG 3 cut(s) 174, 252, 395
BslI CCNNNNNNNGG 1 cut(s) 501
Bsp119I TTCGAA 1 cut(s) 531
Bsp143I GATC 3 cut(s) 243, 391, 433
BspACI CCGC 1 cut(s) 339
BspPI GGATC 1 cut(s) 251
BspT104I TTCGAA 1 cut(s) 531
BsrI ACTGG 4 cut(s) 30, 152, 371, 469
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 3 cut(s) 243, 391, 433
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 596
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 37, 295
BstF5I GGATG 1 cut(s) 489
BstKTI GATC 3 cut(s) 246, 394, 436
BstMBI GATC 3 cut(s) 243, 391, 433
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 2 cut(s) 472, 576
BstV1I GCAGC 3 cut(s) 171, 245, 455
BsuI GTATCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 4 cut(s) 53, 101, 119, 558
CviJI RGCY 9 cut(s) 5, 221, 236, 252, 279, 299, 397, 468, 536
CviKI_1 RGCY 9 cut(s) 5, 221, 236, 252, 279, 299, 397, 468, 536
DdeI CTNAG 2 cut(s) 37, 295
DpnI GATC 3 cut(s) 245, 393, 435
DpnII GATC 3 cut(s) 243, 391, 433
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 4 cut(s) 56, 104, 122, 561
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 4 cut(s) 52, 100, 118, 557
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 4 cut(s) 6, 160, 234, 469
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 4 cut(s) 6, 160, 234, 469
GluI GCNGC 4 cut(s) 6, 160, 234, 469
Hin1II CATG 4 cut(s) 56, 104, 122, 561
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 4 cut(s) 122, 266, 350, 542
Hpy166II GTNNAC 2 cut(s) 23, 454
Hpy188III TCNNGA 4 cut(s) 215, 224, 347, 590
Hpy8I GTNNAC 2 cut(s) 23, 454
HpyAV CCTTC 3 cut(s) 125, 499, 559
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 7 cut(s) 98, 191, 233, 376, 382, 526, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 2 cut(s) 37, 295
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 4 cut(s) 56, 104, 122, 561
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 243, 391, 433
Lsp1109I GCAGC 3 cut(s) 171, 245, 455
LweI GCATC 3 cut(s) 85, 196, 369
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 103
MalI GATC 3 cut(s) 245, 393, 435
MboI GATC 3 cut(s) 243, 391, 433
MfeI CAATTG 1 cut(s) 126
MluCI AATT 5 cut(s) 126, 169, 287, 325, 516
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 1 cut(s) 55
MseI TTAA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 554
NdeII GATC 3 cut(s) 243, 391, 433
NlaIII CATG 4 cut(s) 56, 104, 122, 561
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 1 cut(s) 104
NspV TTCGAA 1 cut(s) 531
PciI ACATGT 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PfeI GAWTC 3 cut(s) 122, 350, 542
PflMI CCANNNNNTGG 1 cut(s) 501
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 4 cut(s) 7, 161, 235, 470
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 4 cut(s) 6, 160, 234, 469
Sau3AI GATC 3 cut(s) 243, 391, 433
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 309
SetI ASST 8 cut(s) 115, 136, 196, 223, 238, 301, 442, 538
SfaNI GCATC 3 cut(s) 85, 196, 369
SfcI CTRYAG 2 cut(s) 472, 576
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 1 cut(s) 64
Sse9I AATT 5 cut(s) 126, 169, 287, 325, 516
SsiI CCGC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 531, 540
TasI AATT 5 cut(s) 126, 169, 287, 325, 516
TfiI GAWTC 3 cut(s) 122, 350, 542
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 4 cut(s) 5, 159, 233, 468
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 64, 135, 168
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 1 cut(s) 378
Van91I CCANNNNNTGG 1 cut(s) 501
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 4 cut(s) 169, 287, 325, 516
XceI RCATGY 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.