RchiOBHm_Chr1g0325681

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014500
Physical Location & Seq
Forward (+)
13725491 .. 13727511
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
ATGGAAGTGAAGCTCCGAACGGCTCGGACTTTGGTCTCCAAGCTCAGCTCCGTTTCCGAACAGACCCGATCCGAAGCCCTCAAGGAGCTCCGCCTCATCACCAAGCACGACGCCGACAGCCGCCCCTTCGTCGCCGACGCCGGCGCCATTCCCTACTTAGCCGAGACTCTCTTCGGCTCCACCCCTGACTTACAAGACGACGCCGCCGCCACTCTCCTCAACATCTCCATCTCCTGCCGCCACAGCCTCATTTCCACGCGCGGCCTCCTCGACGCGATCTCCCACGCGCTACGCAACCACGGCTCACCTACCTCCTCCGCCACCGCCGTCCAGTCTTCCGCCGCCACTCTCCACAGCCTCCTCGTCGTGGAAGACTACCGCCCGATCATCGGCGCCAAGCGCGACATTGTGTACTCGCTGGTTGACATCATCAAGAGCCCCAAGTCTCCTCCGCGGTCGGTGAAGGACGCGCTCAAGGCTCTGTTCGGAATCGCTCTCTACCCCTTGAACCGGGCCTCGCTGGTGGAGCTCGGGCGGTTCCCGCGCTTTTTACTCTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

187

Amino Acids

20.42

Weight (kDa)

9.51

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 11 - 178 2.1e-09 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08315
fragaria_vesca FvH4_7g03360 FvH4_7g03360
malus_domestica MD02G1283700.v1.1 MD07G1049200.v1.1
prunus_persica Prupe.2G038900_v2.0.a1
pyrus_communis pycom02g24170
rosa_chinensis RchiOBHm_Chr1g0325681
rosa_laevigata RLG00000030112
rosa_multiflora Rmu_sc0004714.1_g000002
rosa_roxburghii Rroxscaffold_4G00324480
rosa_rugosa Rorug01G0053700
rosa_samantha Rh1AG069500 Rh1BG056700 Rh1CG069800 Rh1DG074400
rosa_wichuraiana Rw1G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 143, 392
AccII CGCG 8 cut(s) 259, 261, 275, 287, 402, 454, 470, 544
AclWI GGATC 1 cut(s) 63
AcyI GRCGYC 5 cut(s) 111, 138, 144, 201, 393
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 3 cut(s) 367, 389, 510
AgsI TTSAA 1 cut(s) 508
AluBI AGCT 5 cut(s) 13, 43, 48, 88, 529
AluI AGCT 5 cut(s) 13, 43, 48, 88, 529
Alw21I GWGCWC 2 cut(s) 90, 531
Alw26I GTCTC 3 cut(s) 40, 158, 450
AlwI GGATC 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 2 cut(s) 262, 513
AspLEI GCGC 7 cut(s) 146, 261, 289, 395, 402, 472, 546
AspS9I GGNCC 1 cut(s) 513
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 3 cut(s) 91, 297, 472
AvaI CYCGRG 1 cut(s) 530
BanI GGYRCC 2 cut(s) 143, 392
BanII GRGCYC 3 cut(s) 90, 440, 531
BbsI GAAGAC 2 cut(s) 327, 378
Bbv12I GWGCWC 2 cut(s) 90, 531
BccI CCATC 1 cut(s) 236
BceAI ACGGC 3 cut(s) 36, 311, 316
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 3 cut(s) 40, 158, 450
BfoI RGCGCY 2 cut(s) 147, 396
BisI GCNGC 6 cut(s) 121, 204, 207, 238, 262, 342
BlpI GCTNAGC 1 cut(s) 44
BlsI GCNGC 6 cut(s) 122, 205, 208, 239, 263, 343
Bme1390I CCNGG 1 cut(s) 512
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 4 cut(s) 145, 178, 394, 539
BmrFI CCNGG 1 cut(s) 512
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 327, 378
Bpu1102I GCTNAGC 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 65, 458
BpuMI CCSGG 1 cut(s) 512
BsaHI GRCGYC 5 cut(s) 111, 138, 144, 201, 393
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 298, 452
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 389, 510
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 298, 452
BseLI CCNNNNNNNGG 3 cut(s) 367, 389, 510
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 5 cut(s) 206, 257, 304, 350, 438
Bsh1236I CGCG 8 cut(s) 259, 261, 275, 287, 402, 454, 470, 544
Bsh1285I CGRYCG 1 cut(s) 458
BshFI GGCC 2 cut(s) 264, 515
BshNI GGYRCC 2 cut(s) 143, 392
BsiEI CGRYCG 1 cut(s) 458
BsiHKAI GWGCWC 2 cut(s) 90, 531
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 2 cut(s) 141, 511
BslI CCNNNNNNNGG 3 cut(s) 367, 389, 510
BsmAI GTCTC 3 cut(s) 40, 158, 450
BsnI GGCC 2 cut(s) 264, 515
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 90, 440, 531
Bsp143I GATC 3 cut(s) 68, 276, 384
Bsp1720I GCTNAGC 1 cut(s) 44
BspANI GGCC 2 cut(s) 264, 515
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 8 cut(s) 259, 261, 275, 287, 402, 454, 470, 544
BspLI GGNNCC 4 cut(s) 145, 178, 394, 539
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 143, 392
BspTNI GGTCTC 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 298, 452
BssMI GATC 3 cut(s) 68, 276, 384
BssNI GRCGYC 5 cut(s) 111, 138, 144, 201, 393
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 5 cut(s) 111, 138, 144, 201, 393
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 44, 157
BstDSI CCRYGG 2 cut(s) 298, 452
BstFNI CGCG 8 cut(s) 259, 261, 275, 287, 402, 454, 470, 544
BstH2I RGCGCY 2 cut(s) 147, 396
BstHHI GCGC 7 cut(s) 146, 261, 289, 395, 402, 472, 546
BstKTI GATC 3 cut(s) 71, 279, 387
BstMAI GTCTC 3 cut(s) 40, 158, 450
BstMBI GATC 3 cut(s) 68, 276, 384
BstMCI CGRYCG 1 cut(s) 458
BstMWI GCNNNNNNNGC 6 cut(s) 243, 300, 399, 476, 526, 541
BstPAI GACNNNNGTC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 510
BstUI CGCG 8 cut(s) 259, 261, 275, 287, 402, 454, 470, 544
BstV2I GAAGAC 2 cut(s) 327, 378
BsuRI GGCC 2 cut(s) 264, 515
BtgI CCRYGG 2 cut(s) 298, 452
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 7 cut(s) 146, 261, 289, 395, 402, 472, 546
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 513
Cfr42I CCGCGG 1 cut(s) 455
CseI GACGC 5 cut(s) 119, 146, 209, 281, 476
Csp6I GTAC 1 cut(s) 412
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 44, 157
DinI GGCGCC 2 cut(s) 145, 394
DpnI GATC 3 cut(s) 70, 278, 386
DpnII GATC 3 cut(s) 68, 276, 384
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 3 cut(s) 80, 307, 328
Ecl136II GAGCTC 2 cut(s) 88, 529
Eco24I GRGCYC 3 cut(s) 90, 440, 531
Eco31I GGTCTC 1 cut(s) 40
Eco53kI GAGCTC 2 cut(s) 88, 529
Eco88I CYCGRG 1 cut(s) 530
EcoICRI GAGCTC 2 cut(s) 88, 529
EcoT38I GRGCYC 3 cut(s) 90, 440, 531
EgeI GGCGCC 2 cut(s) 145, 394
EheI GGCGCC 2 cut(s) 145, 394
FauI CCCGC 1 cut(s) 549
Fnu4HI GCNGC 6 cut(s) 121, 204, 207, 238, 262, 342
FriOI GRGCYC 3 cut(s) 90, 440, 531
Fsp4HI GCNGC 6 cut(s) 121, 204, 207, 238, 262, 342
GlaI GCGC 7 cut(s) 145, 260, 288, 394, 401, 471, 545
GluI GCNGC 6 cut(s) 121, 204, 207, 238, 262, 342
HaeII RGCGCY 2 cut(s) 147, 396
HaeIII GGCC 2 cut(s) 264, 515
HapII CCGG 2 cut(s) 141, 511
HgaI GACGC 5 cut(s) 119, 146, 209, 281, 476
HhaI GCGC 7 cut(s) 146, 261, 289, 395, 402, 472, 546
Hin1I GRCGYC 5 cut(s) 111, 138, 144, 201, 393
Hin6I GCGC 7 cut(s) 144, 259, 287, 393, 400, 470, 544
HinP1I GCGC 7 cut(s) 144, 259, 287, 393, 400, 470, 544
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 2 cut(s) 166, 489
HpaII CCGG 2 cut(s) 141, 511
HphI GGTGA 3 cut(s) 91, 297, 472
Hpy166II GTNNAC 2 cut(s) 412, 424
Hpy188I TCNGA 5 cut(s) 17, 27, 58, 73, 488
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 2 cut(s) 412, 424
Hpy99I CGWCG 6 cut(s) 113, 134, 140, 203, 275, 368
HpyAV CCTTC 2 cut(s) 136, 457
HpyF10VI GCNNNNNNNGC 6 cut(s) 243, 300, 399, 476, 526, 541
HpyF3I CTNAG 2 cut(s) 44, 157
Hsp92I GRCGYC 5 cut(s) 111, 138, 144, 201, 393
HspAI GCGC 7 cut(s) 144, 259, 287, 393, 400, 470, 544
KasI GGCGCC 2 cut(s) 143, 392
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
KspI CCGCGG 1 cut(s) 455
Kzo9I GATC 3 cut(s) 68, 276, 384
LmnI GCTCC 6 cut(s) 18, 53, 85, 93, 182, 526
LpnPI CCDG 8 cut(s) 154, 198, 247, 344, 404, 506, 524, 541
MalI GATC 3 cut(s) 70, 278, 386
MboI GATC 3 cut(s) 68, 276, 384
MboII GAAGA 3 cut(s) 163, 327, 383
MhlI GDGCHC 3 cut(s) 90, 440, 531
Mly113I GGCGCC 2 cut(s) 144, 393
MlyI GAGTC 1 cut(s) 160
MreI CGCCGGCG 1 cut(s) 140
MroNI GCCGGC 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 2 cut(s) 141, 511
MspR9I CCNGG 1 cut(s) 512
MvnI CGCG 8 cut(s) 259, 261, 275, 287, 402, 454, 470, 544
MwoI GCNNNNNNNGC 6 cut(s) 243, 300, 399, 476, 526, 541
NaeI GCCGGC 1 cut(s) 142
NarI GGCGCC 2 cut(s) 144, 393
NciI CCSGG 1 cut(s) 512
NdeII GATC 3 cut(s) 68, 276, 384
NgoMIV GCCGGC 1 cut(s) 140
NlaIV GGNNCC 4 cut(s) 145, 178, 394, 539
NmeAIII GCCGAG 1 cut(s) 187
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 489
PkrI GCNGC 6 cut(s) 122, 205, 208, 239, 263, 343
PleI GAGTC 1 cut(s) 160
PluTI GGCGCC 2 cut(s) 147, 396
PpsI GAGTC 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 32
Psp124BI GAGCTC 2 cut(s) 90, 531
PspN4I GGNNCC 4 cut(s) 145, 178, 394, 539
PspPI GGNCC 1 cut(s) 513
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SacI GAGCTC 2 cut(s) 90, 531
SacII CCGCGG 1 cut(s) 455
SatI GCNGC 6 cut(s) 121, 204, 207, 238, 262, 342
Sau3AI GATC 3 cut(s) 68, 276, 384
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 3 cut(s) 90, 440, 531
SetI ASST 7 cut(s) 15, 45, 50, 90, 310, 314, 531
SfoI GGCGCC 2 cut(s) 145, 394
Sfr303I CCGCGG 1 cut(s) 455
SgrAI CRCCGGYG 1 cut(s) 140
SgrBI CCGCGG 1 cut(s) 455
SmlI CTYRAG 2 cut(s) 80, 473
SmoI CTYRAG 2 cut(s) 80, 473
SspDI GGCGCC 2 cut(s) 143, 392
SstI GAGCTC 2 cut(s) 90, 531
StyD4I CCNGG 1 cut(s) 510
TaqI TCGA 1 cut(s) 270
TatI WGTACW 1 cut(s) 411
TauI GCSGC 6 cut(s) 123, 206, 209, 240, 264, 344
TfiI GAWTC 1 cut(s) 489
TspGWI ACGGA 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.