RchiOBHm_Chr1g0331951

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016637
Physical Location & Seq
Forward (+)
22955881 .. 22957951
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1491 bp
ATGGATTCACAGGAGAACCAACAATCCATTAACCAACCACAACCCCATCCAACTCACTCCTTCAACTTCAAATTGAAATCATCTGTATTCTACGTCTCCTCCATCCTAATTCTCGTCCTCGCCGTCTCATTCAGTTTCACCACAACAAACTTCCTAAAAACCCAACACCTAAAGTACACATTCTCATTACATCCAACCTTGTTTCAAACTCTTCTGGAGTTTATTCACCCTTCCAAGAAAACCATACAAACCCAAGAGCCTGAACCCATTTCGCTTCCCCTCAACTGTGTCCTGTGGATGGCTCCTTTTCTCTCGGGTGGTGGGTACAGTTCAGAAGGTTGGTCGTATATTTTAGCACTCTATGAACAGAATAGAACCCGCAGTTTTAGAATGGCCATTGAGCAACATGGTGATCTAGAGTCCTTTGAGTTCTGGGAGGGATTGCCTAAATATATGAAAGATTTGGCAATTGAGCTTTACCACACAAAATGTAATATGAAAGAGACGATAGTCATATGTCACAGCGAGCCTGGTGCATGGAACCCTCCATTGTTTGAAACTCTCCCTTGCCCACCAACTGCTTATGAAAACTTCAAGTCTGTGATTGGTCGGACCATGTTTGAAACTGATAGGGTGAGTCTCGAGCATGTAAAGCGCTGTAACAAAATGGATTATGTGTGGGTTCCTACTGAGTTTCATGTATCTACATTCATAGAAAGTGGGGTTGATCCATCTAAGGTGGTCAAAATTGTGCAGCCTATTGATGTGAAGTTCTTTGATCCAGTTGAGTATGAGCCATTAAATCTTGCTTCTATAGGGAAATTGGTCATGGGGAAGACAACACGTAACTCAAGATTTGTGTTTATGAGCATTTTTAAGTGGGAATATAGGAAAGGATGGGATGTGTTGCTGAAATCATATTTGGAAGAATACACTGCAGCAGACAGGGTTACTTTATATCTTTTAACAAATCCATATCACTCGGATAAAGATTTTAGCAATAAGATAGTGGAGTTTGTGCAGAAAGCTGGAATAGAAAAGCCAGCGACTGGTTGGGCTTCAGTTTATGTGATTGACACTCATGTAGCCCAATCTGATTTGCCTCGAATATACAAGGCAGCTGATGCATTTGTTCTTCCGTCAAGAGGGGAAGGGTGGGGAAGGCCTATTGTAGAAGCTATGGCAATGTCGTTGCCAGTGATTGCCACAAATTGGTCGGGACCAACAGAGTATTTGACCGAAGAGAATAGCTATCCATTGATAGTGGATGGGATGAGTGAAGTAATGGAAGGGCCTTTCAAAGGACATCTCTGGGCAGAACCTTCTGTTACTAAGCTTCGGGTGCTAATGAGGCATGTAATGGATAATGTCGACGAAGCCAAGGCCAAAGGAAGAAGAGCAAGGGAAGACATGATCACCAAGTTTGCTCCGGAGATTGTTGCAGATATTGTTATCAAACATGTACAAAACATATTTAAAAAGATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

496

Amino Acids

56.9

Weight (kDa)

6.23

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_1_4 PF13692 285 - 417 8.8e-16 Glycosyl transferases group 1
Glycos_transf_1 PF00534 362 - 416 9e-14 Glycosyl transferases group 1
GT4-conflict PF20706 363 - 475 4.2e-07 Family 4 Glycosyltransferase in conflict systems
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016637)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10630
fragaria_vesca FvH4_5g28400
malus_domestica MD03G1165900.v1.1
prunus_persica Prupe.4G266300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0331951
rosa_laevigata RLG00000029701
rosa_multiflora Rmu_sc0008128.1_g000008
rosa_roxburghii Rroxscaffold_4G00318590
rosa_rugosa Rorug01G0097100
rosa_samantha Rh1AG121200 Rh1BG092800 Rh1CG116000 Rh1DG127100
rosa_wichuraiana Rw1G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1049, 1212
AccI GTMKAC 1 cut(s) 1371
AccIII TCCGGA 1 cut(s) 1429
AciI CCGC 1 cut(s) 379
AclWI GGATC 2 cut(s) 722, 773
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 1044
AfaI GTAC 3 cut(s) 176, 326, 1464
AfeI AGCGCT 1 cut(s) 656
AfiI CCNNNNNNNGG 5 cut(s) 298, 1049, 1145, 1212, 1301
AflIII ACRYGT 2 cut(s) 842, 1459
AgsI TTSAA 8 cut(s) 64, 70, 76, 206, 557, 595, 623, 1300
AjnI CCWGG 1 cut(s) 529
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 6 cut(s) 475, 1028, 1121, 1178, 1251, 1336
AluI AGCT 6 cut(s) 475, 1028, 1121, 1178, 1251, 1336
Alw26I GTCTC 4 cut(s) 100, 130, 497, 644
AlwI GGATC 2 cut(s) 722, 773
AlwNI CAGNNNCTG 1 cut(s) 1049
Ama87I CYCGRG 2 cut(s) 313, 641
Aor13HI TCCGGA 1 cut(s) 1429
Aor51HI AGCGCT 1 cut(s) 656
AoxI GGCC 4 cut(s) 393, 1163, 1292, 1383
ApeKI GCWGC 3 cut(s) 754, 938, 1118
AspLEI GCGC 1 cut(s) 657
AspS9I GGNCC 3 cut(s) 612, 1220, 1292
AsuHPI GGTGA 5 cut(s) 130, 218, 422, 646, 1408
AvaI CYCGRG 2 cut(s) 313, 641
AvaII GGWCC 2 cut(s) 612, 1220
BalI TGGCCA 1 cut(s) 395
BbsI GAAGAC 2 cut(s) 842, 1413
BbvI GCAGC 3 cut(s) 766, 950, 1130
BccI CCATC 7 cut(s) 54, 110, 292, 739, 891, 1262, 1477
BceAI ACGGC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 1 cut(s) 531
BclI TGATCA 1 cut(s) 1413
BcoDI GTCTC 4 cut(s) 100, 130, 497, 644
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 2 cut(s) 813, 936
BfoI RGCGCY 1 cut(s) 658
BisI GCNGC 3 cut(s) 755, 939, 1119
BlsI GCNGC 3 cut(s) 756, 940, 1120
Bme1390I CCNGG 1 cut(s) 531
Bme18I GGWCC 2 cut(s) 612, 1220
BmeT110I CYCGRG 2 cut(s) 313, 641
BmgT120I GGNCC 3 cut(s) 612, 1220, 1292
BmiI GGNNCC 4 cut(s) 303, 542, 684, 1221
BmrFI CCNGG 1 cut(s) 531
BmsI GCATC 1 cut(s) 1114
BoxI GACNNNNGTC 1 cut(s) 509
BpiI GAAGAC 2 cut(s) 842, 1413
BpmI CTGGAG 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 835
BsaAI YACGTR 1 cut(s) 845
BsaJI CCNNGG 1 cut(s) 1380
BsaWI WCCGGW 1 cut(s) 1429
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 1049, 1145, 1212, 1301
Bse1I ACTGG 3 cut(s) 782, 1054, 1196
Bse3DI GCAATG 1 cut(s) 1191
BseAI TCCGGA 1 cut(s) 1429
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 1380
BseGI GGATG 8 cut(s) 46, 102, 190, 303, 902, 907, 1273, 1278
BseLI CCNNNNNNNGG 5 cut(s) 298, 1049, 1145, 1212, 1301
BseMI GCAATG 1 cut(s) 1191
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 3 cut(s) 782, 1054, 1196
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 3 cut(s) 766, 950, 1130
BsgI GTGCAG 2 cut(s) 773, 1040
BshFI GGCC 4 cut(s) 395, 1165, 1294, 1385
BsiHKCI CYCGRG 2 cut(s) 313, 641
BsiSI CCGG 1 cut(s) 1430
BslFI GGGAC 1 cut(s) 1233
BslI CCNNNNNNNGG 5 cut(s) 298, 1049, 1145, 1212, 1301
BsmAI GTCTC 4 cut(s) 100, 130, 497, 644
BsmBI CGTCTC 3 cut(s) 100, 130, 497
BsmFI GGGAC 1 cut(s) 1233
BsnI GGCC 4 cut(s) 395, 1165, 1294, 1385
BsoBI CYCGRG 2 cut(s) 313, 641
Bsp13I TCCGGA 1 cut(s) 1429
Bsp1407I TGTACA 1 cut(s) 1462
Bsp143I GATC 4 cut(s) 412, 727, 778, 1413
BspACI CCGC 1 cut(s) 379
BspANI GGCC 4 cut(s) 395, 1165, 1294, 1385
BspCNI CTCAG 1 cut(s) 682
BspEI TCCGGA 1 cut(s) 1429
BspLI GGNNCC 4 cut(s) 303, 542, 684, 1221
BspMAI CTGCAG 1 cut(s) 940
BspPI GGATC 2 cut(s) 722, 773
BspQI GCTCTTC 1 cut(s) 1390
BsrDI GCAATG 1 cut(s) 1191
BsrGI TGTACA 1 cut(s) 1462
BsrI ACTGG 3 cut(s) 782, 1054, 1196
BssECI CCNNGG 1 cut(s) 1380
BssMI GATC 4 cut(s) 412, 727, 778, 1413
BssT1I CCWWGG 1 cut(s) 1380
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 2 cut(s) 287, 329
Bst6I CTCTTC 3 cut(s) 216, 1236, 1390
BstAPI GCANNNNNTGC 1 cut(s) 1124
BstAUI TGTACA 1 cut(s) 1462
BstBAI YACGTR 1 cut(s) 845
BstC8I GCNNGC 2 cut(s) 527, 1044
BstDEI CTNAG 3 cut(s) 690, 735, 1332
BstENI CCTNNNNNAGG 1 cut(s) 1299
BstF5I GGATG 8 cut(s) 46, 102, 190, 303, 902, 907, 1273, 1278
BstH2I RGCGCY 1 cut(s) 658
BstHHI GCGC 1 cut(s) 657
BstKTI GATC 4 cut(s) 415, 730, 781, 1416
BstMAI GTCTC 4 cut(s) 100, 130, 497, 644
BstMBI GATC 4 cut(s) 412, 727, 778, 1413
BstMWI GCNNNNNNNGC 4 cut(s) 652, 1124, 1342, 1351
BstNI CCWGG 1 cut(s) 531
BstNSI RCATGY 3 cut(s) 650, 1358, 1463
BstPAI GACNNNNGTC 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 529
BstSFI CTRYAG 2 cut(s) 813, 936
BstV1I GCAGC 3 cut(s) 766, 950, 1130
BstV2I GAAGAC 2 cut(s) 842, 1413
BsuRI GGCC 4 cut(s) 395, 1165, 1294, 1385
BtsCI GGATG 8 cut(s) 46, 102, 190, 303, 902, 907, 1273, 1278
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 2 cut(s) 933, 1203
Cac8I GCNNGC 2 cut(s) 527, 1044
CaiI CAGNNNCTG 1 cut(s) 1049
CfoI GCGC 1 cut(s) 657
Cfr13I GGNCC 3 cut(s) 612, 1220, 1292
Csp6I GTAC 3 cut(s) 175, 325, 1463
CviQI GTAC 3 cut(s) 175, 325, 1463
DdeI CTNAG 3 cut(s) 690, 735, 1332
DpnI GATC 4 cut(s) 414, 729, 780, 1415
DpnII GATC 4 cut(s) 412, 727, 778, 1413
DraI TTTAAA 1 cut(s) 1477
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 3 cut(s) 216, 1236, 1390
EarI CTCTTC 3 cut(s) 216, 1236, 1390
Eco130I CCWWGG 1 cut(s) 1380
Eco147I AGGCCT 1 cut(s) 1165
Eco47I GGWCC 2 cut(s) 612, 1220
Eco47III AGCGCT 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 1044
Eco88I CYCGRG 2 cut(s) 313, 641
EcoNI CCTNNNNNAGG 1 cut(s) 1299
EcoO109I RGGNCCY 1 cut(s) 1292
EcoRII CCWGG 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 1380
EcoT22I ATGCAT 1 cut(s) 1129
ErhI CCWWGG 1 cut(s) 1380
Esp3I CGTCTC 3 cut(s) 100, 130, 497
FaqI GGGAC 1 cut(s) 1233
FauI CCCGC 1 cut(s) 386
FauNDI CATATG 1 cut(s) 515
FbaI TGATCA 1 cut(s) 1413
FblI GTMKAC 1 cut(s) 1371
Fnu4HI GCNGC 3 cut(s) 755, 939, 1119
FokI GGATG 8 cut(s) 33, 89, 177, 310, 909, 914, 1280, 1285
Fsp4HI GCNGC 3 cut(s) 755, 939, 1119
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 656
GluI GCNGC 3 cut(s) 755, 939, 1119
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 658
HaeIII GGCC 4 cut(s) 395, 1165, 1294, 1385
HapII CCGG 1 cut(s) 1430
HhaI GCGC 1 cut(s) 657
Hin6I GCGC 1 cut(s) 655
HinP1I GCGC 1 cut(s) 655
HincII GTYRAC 1 cut(s) 1372
HindII GTYRAC 1 cut(s) 1372
HindIII AAGCTT 1 cut(s) 1334
HinfI GANTC 3 cut(s) 5, 419, 637
HpaII CCGG 1 cut(s) 1430
HphI GGTGA 5 cut(s) 130, 218, 422, 646, 1408
Hpy166II GTNNAC 2 cut(s) 177, 1372
Hpy188I TCNGA 4 cut(s) 334, 612, 985, 1096
Hpy188III TCNNGA 7 cut(s) 215, 416, 641, 852, 1143, 1218, 1430
Hpy8I GTNNAC 2 cut(s) 177, 1372
Hpy99I CGWCG 1 cut(s) 1376
HpyAV CCTTC 7 cut(s) 70, 240, 329, 1145, 1155, 1283, 1332
HpyCH4III ACNGT 2 cut(s) 287, 329
HpyCH4IV ACGT 2 cut(s) 93, 844
HpyCH4V TGCA 6 cut(s) 536, 754, 938, 1021, 1127, 1442
HpyF10VI GCNNNNNNNGC 4 cut(s) 652, 1124, 1342, 1351
HpyF3I CTNAG 3 cut(s) 690, 735, 1332
HpySE526I ACGT 2 cut(s) 93, 844
HspAI GCGC 1 cut(s) 655
Kpn2I TCCGGA 1 cut(s) 1429
Ksp22I TGATCA 1 cut(s) 1413
Kzo9I GATC 4 cut(s) 412, 727, 778, 1413
LguI GCTCTTC 1 cut(s) 1390
LmnI GCTCC 2 cut(s) 307, 1432
Lsp1109I GCAGC 3 cut(s) 766, 950, 1130
LweI GCATC 1 cut(s) 1114
MaeI CTAG 1 cut(s) 416
MaeII ACGT 2 cut(s) 93, 844
MaeIII GTNAC 5 cut(s) 518, 659, 845, 949, 1327
MalI GATC 4 cut(s) 414, 729, 780, 1415
MboI GATC 4 cut(s) 412, 727, 778, 1413
MboII GAAGA 8 cut(s) 203, 847, 938, 1127, 1253, 1404, 1407, 1418
MfeI CAATTG 1 cut(s) 468
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 6 cut(s) 71, 108, 468, 747, 821, 1210
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 428, 646
MmeI TCCRAC 3 cut(s) 74, 218, 590
MnlI CCTC 8 cut(s) 109, 128, 290, 430, 555, 1113, 1139, 1344
Mox20I TGGCCA 1 cut(s) 395
Mph1103I ATGCAT 1 cut(s) 1129
MroI TCCGGA 1 cut(s) 1429
MscI TGGCCA 1 cut(s) 395
MseI TTAA 6 cut(s) 30, 800, 876, 965, 1476, 1489
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 1121
MspI CCGG 1 cut(s) 1430
MspR9I CCNGG 1 cut(s) 531
MunI CAATTG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 4 cut(s) 652, 1124, 1342, 1351
NdeI CATATG 1 cut(s) 515
NdeII GATC 4 cut(s) 412, 727, 778, 1413
NlaIV GGNNCC 4 cut(s) 303, 542, 684, 1221
NmuCI GTSAC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 1129
NspI RCATGY 3 cut(s) 650, 1358, 1463
PaeR7I CTCGAG 1 cut(s) 641
PceI AGGCCT 1 cut(s) 1165
PciI ACATGT 1 cut(s) 1459
PciSI GCTCTTC 1 cut(s) 1390
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 2 cut(s) 1049, 1212
PkrI GCNGC 3 cut(s) 756, 940, 1120
PleI GAGTC 2 cut(s) 427, 645
PpsI GAGTC 2 cut(s) 427, 645
Ppu21I YACGTR 1 cut(s) 845
PscI ACATGT 1 cut(s) 1459
PshAI GACNNNNGTC 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 4 cut(s) 303, 542, 684, 1221
PspPI GGNCC 3 cut(s) 612, 1220, 1292
PstI CTGCAG 1 cut(s) 940
PstNI CAGNNNCTG 1 cut(s) 1049
PvuII CAGCTG 1 cut(s) 1121
RsaI GTAC 3 cut(s) 176, 326, 1464
RsaNI GTAC 3 cut(s) 175, 325, 1463
SalI GTCGAC 1 cut(s) 1370
SapI GCTCTTC 1 cut(s) 1390
SaqAI TTAA 6 cut(s) 30, 800, 876, 965, 1476, 1489
SatI GCNGC 3 cut(s) 755, 939, 1119
Sau3AI GATC 4 cut(s) 412, 727, 778, 1413
Sau96I GGNCC 3 cut(s) 612, 1220, 1292
SchI GAGTC 2 cut(s) 428, 646
ScrFI CCNGG 1 cut(s) 531
SfaNI GCATC 1 cut(s) 1114
SfcI CTRYAG 2 cut(s) 813, 936
Sfr274I CTCGAG 1 cut(s) 641
SinI GGWCC 2 cut(s) 612, 1220
SlaI CTCGAG 1 cut(s) 641
SmlI CTYRAG 2 cut(s) 641, 850
SmoI CTYRAG 2 cut(s) 641, 850
Sse9I AATT 6 cut(s) 71, 108, 468, 747, 821, 1210
SseBI AGGCCT 1 cut(s) 1165
SsiI CCGC 1 cut(s) 379
SspMI CTAG 1 cut(s) 416
StuI AGGCCT 1 cut(s) 1165
StyD4I CCNGG 1 cut(s) 529
StyI CCWWGG 1 cut(s) 1380
TaaI ACNGT 2 cut(s) 287, 329
TaiI ACGT 2 cut(s) 96, 847
TaqI TCGA 3 cut(s) 642, 1105, 1371
TaqII GACCGA 1 cut(s) 1253
TasI AATT 6 cut(s) 71, 108, 468, 747, 821, 1210
TatI WGTACW 2 cut(s) 174, 1462
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 6 cut(s) 30, 800, 876, 965, 1476, 1489
Tru9I TTAA 6 cut(s) 30, 800, 876, 965, 1476, 1489
TscAI CASTG 2 cut(s) 940, 1203
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 3 cut(s) 754, 938, 1118
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 6 cut(s) 378, 470, 512, 600, 686, 700
TspGWI ACGGA 1 cut(s) 1128
TspRI CASTG 2 cut(s) 940, 1203
Van91I CCANNNNNTGG 2 cut(s) 1049, 1212
VpaK11BI GGWCC 2 cut(s) 612, 1220
XagI CCTNNNNNAGG 1 cut(s) 1299
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 3 cut(s) 650, 1358, 1463
XcmI CCANNNNNNNNNTGG 1 cut(s) 1050
XhoI CTCGAG 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 1371
XspI CTAG 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.