Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015681

Physical Location & Seq

Genomic Coordinates Forward (+)

23525319 .. 23528637

Gene Structure 3319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAGAGGTGGGTTGTGGACATATCCGAGTGGGACCCAACCCCCCAAGACTTGTCCTTCGCCCTCTCTGTTCTTCCTCCATCTCAGCAATCCTCCGTCACCAGATATGTACGTCTGGAAGACCGGAAACGGGCACTTGTGAGCCGGTTGCTTCAGTATGCTCTTGTACACCAAGTCTTGGCAATCCCGTATGATCAGATTGTCATTAACCGCACCTTGGAAGGCAAACCGTATCTGGAATGTGATGAAGTTTGCGTGGATTTTCCCAATTTTAATTTCAATGTATCGCATCATGGTGACTATGTGGCTATAGCATCAGAACCTTTATGCCTTGTGGGGGTTGACATTGTTTCCATAGTCATTCCTCAGGATGAGACTGTCATAGAATTCCTTCAAAGCTTCTCCTCATACTTTTCAAGTTTTGAATGGCATAACATTTGCACTGCTGGCACAAACAATGATATGCTGATTGAGTTTTACAGATATTGGTGTCTGAAAGAAGCTTTTGTCAAAGCAATTGGGAGTGGACTGGCATATGATTTGGACAAAGTGGAATTTCATCACAGTTGCTGGGCAAACATTTCTGTTAACATTGAGGGCAAGGCTACGAGAGAGTGGCGCTTTTGGCTTCTAGATTTGGGAAAGAATCATTTGGTATCCATTGCAAGGGGTCATCCAAGATCAGCTTCTGGGAGTTACATGAGAACATTAAGACGATCGGAGTTTGATGAAAAGGAATATCATGCAGCTCTTCATCTTCCAAATGTAGGGTTTGTCTCGAGAACTGTAGAACAACTAATTCCGGTTTCACACAAAGCCCCTGTACATCACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008897 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0015939 GO:0016053 GO:0016740 GO:0016772 GO:0016780 GO:0019752 GO:0019878 GO:0032787 GO:0034641 GO:0043167 GO:0043169 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0051186 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

278

Amino Acids

31.93

Weight (kDa)

5.78

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	10 - 108	1e-35	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	112 - 221	3.6e-15	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05530
malus_domestica	MD02G1257000.v1.1
prunus_persica	Prupe.2G075500_v2.0.a1 Prupe.2G075500_v2.0.a1
pyrus_communis	pycom02g21730 pycom02g21770
rosa_chinensis	RchiOBHm_Chr1g0332361
rosa_laevigata	RLG00000029676
rosa_multiflora	Rmu_sc0003422.1_g000008
rosa_roxburghii	Rroxscaffold_4G00318260
rosa_rugosa	Rorug01G0100200
rosa_samantha	Rh1AG124100 Rh1BG094700 Rh1CG118100 Rh1DG129300
rosa_wichuraiana	Rw1G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	178
AciI	CCGC	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	386, 554
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	111, 168, 825
AfiI	CCNNNNNNNGG	6 cut(s)	130, 178, 217, 337, 666, 767
AgsI	TTSAA	4 cut(s)	280, 395, 417, 425
AjuI	GAANNNNNNNTTGG	4 cut(s)	260, 292, 670, 702
AluBI	AGCT	4 cut(s)	399, 503, 686, 749
AluI	AGCT	4 cut(s)	399, 503, 686, 749
Alw26I	GTCTC	2 cut(s)	368, 781
AlwNI	CAGNNNCTG	2 cut(s)	570, 689
Ama87I	CYCGRG	1 cut(s)	778
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	2 cut(s)	386, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	91, 308
AvaI	CYCGRG	1 cut(s)	778
AvaII	GGWCC	1 cut(s)	34
AxyI	CCTNAGG	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	368, 781
BfaI	CTAG	2 cut(s)	632, 835
BfmI	CTRYAG	2 cut(s)	309, 786
BfoI	RGCGCY	1 cut(s)	622
BfuI	GTATCC	1 cut(s)	667
BisI	GCNGC	1 cut(s)	747
BlsI	GCNGC	1 cut(s)	748
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	778
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	35, 36
BmsI	GCATC	2 cut(s)	298, 323
BpiI	GAAGAC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	2 cut(s)	123, 802
Bsc4I	CCNNNNNNNGG	6 cut(s)	130, 178, 217, 337, 666, 767
Bse118I	RCCGGY	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	534
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	376, 673
BseLI	CCNNNNNNNGG	6 cut(s)	130, 178, 217, 337, 666, 767
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	2 cut(s)	98, 380
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	394
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	758
BseYI	CCCAGC	1 cut(s)	570
Bsh1285I	CGRYCG	1 cut(s)	719
BsiEI	CGRYCG	1 cut(s)	719
BsiHKCI	CYCGRG	1 cut(s)	778
BsiSI	CCGG	3 cut(s)	124, 145, 803
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	6 cut(s)	130, 178, 217, 337, 666, 767
BsmAI	GTCTC	2 cut(s)	368, 781
BsmFI	GGGAC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	778
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp1407I	TGTACA	2 cut(s)	166, 823
Bsp143I	GATC	3 cut(s)	193, 680, 716
BspACI	CCGC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	97, 379
BspLI	GGNNCC	2 cut(s)	35, 36
BspQI	GCTCTTC	1 cut(s)	756
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	144
BsrGI	TGTACA	2 cut(s)	166, 823
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	193, 680, 716
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	4 cut(s)	231, 379, 566, 787
Bst6I	CTCTTC	1 cut(s)	756
BstAUI	TGTACA	2 cut(s)	166, 823
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	84, 366
BstF5I	GGATG	2 cut(s)	376, 673
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	3 cut(s)	196, 683, 719
BstMAI	GTCTC	2 cut(s)	368, 781
BstMBI	GATC	3 cut(s)	193, 680, 716
BstMCI	CGRYCG	1 cut(s)	719
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 625
BstSFI	CTRYAG	2 cut(s)	309, 786
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	1 cut(s)	126
Bsu36I	CCTNAGG	1 cut(s)	366
BsuI	GTATCC	1 cut(s)	667
BtsCI	GGATG	2 cut(s)	376, 673
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	448
CaiI	CAGNNNCTG	2 cut(s)	570, 689
CfoI	GCGC	1 cut(s)	621
Cfr10I	RCCGGY	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	3 cut(s)	110, 167, 824
CviAII	CATG	3 cut(s)	293, 700, 743
CviJI	RGCY	9 cut(s)	144, 308, 399, 503, 605, 628, 686, 749, 818
CviKI_1	RGCY	9 cut(s)	144, 308, 399, 503, 605, 628, 686, 749, 818
CviQI	GTAC	3 cut(s)	110, 167, 824
DdeI	CTNAG	2 cut(s)	84, 366
DpnI	GATC	3 cut(s)	195, 682, 718
DpnII	GATC	3 cut(s)	193, 680, 716
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	137
Eco81I	CCTNAGG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	778
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	3 cut(s)	296, 703, 746
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	292, 699, 742
FauNDI	CATATG	1 cut(s)	535
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	747
FokI	GGATG	2 cut(s)	383, 660
Fsp4HI	GCNGC	1 cut(s)	747
FspBI	CTAG	2 cut(s)	632, 835
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	1 cut(s)	747
GsaI	CCCAGC	1 cut(s)	574
HaeII	RGCGCY	1 cut(s)	622
HapII	CCGG	3 cut(s)	124, 145, 803
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	3 cut(s)	296, 703, 746
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	2 cut(s)	343, 589
HindII	GTYRAC	2 cut(s)	343, 589
HindIII	AAGCTT	2 cut(s)	397, 501
HinfI	GANTC	1 cut(s)	646
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	3 cut(s)	124, 145, 803
HphI	GGTGA	2 cut(s)	91, 308
Hpy166II	GTNNAC	5 cut(s)	19, 169, 343, 527, 589
Hpy188I	TCNGA	5 cut(s)	28, 198, 319, 495, 721
Hpy188III	TCNNGA	6 cut(s)	116, 236, 368, 632, 778, 780
Hpy8I	GTNNAC	5 cut(s)	19, 169, 343, 527, 589
HpyAV	CCTTC	3 cut(s)	67, 215, 401
HpyCH4III	ACNGT	4 cut(s)	231, 379, 566, 787
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	441, 665, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 625
HpyF3I	CTNAG	2 cut(s)	84, 366
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	3 cut(s)	296, 703, 746
HspAI	GCGC	1 cut(s)	619
KflI	GGGWCCC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	193, 680, 716
LguI	GCTCTTC	1 cut(s)	756
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	2 cut(s)	298, 323
MaeI	CTAG	2 cut(s)	632, 835
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	3 cut(s)	97, 296, 695
MalI	GATC	3 cut(s)	195, 682, 718
MboI	GATC	3 cut(s)	193, 680, 716
MboII	GAAGA	4 cut(s)	65, 131, 743, 749
MfeI	CAATTG	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	6 cut(s)	268, 274, 386, 516, 554, 798
MnlI	CCTC	6 cut(s)	74, 87, 103, 375, 415, 589
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	4 cut(s)	207, 273, 588, 710
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	3 cut(s)	124, 145, 803
MunI	CAATTG	1 cut(s)	516
MwoI	GCNNNNNNNGC	2 cut(s)	447, 625
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	3 cut(s)	193, 680, 716
NlaIII	CATG	3 cut(s)	296, 703, 746
NlaIV	GGNNCC	2 cut(s)	35, 36
NmuCI	GTSAC	2 cut(s)	97, 296
PaeR7I	CTCGAG	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	756
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	646
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	748
Ple19I	CGATCG	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	570
PspN4I	GGNNCC	2 cut(s)	35, 36
PspPI	GGNCC	1 cut(s)	34
PspPPI	RGGWCCY	1 cut(s)	34
PstNI	CAGNNNCTG	2 cut(s)	570, 689
PvuI	CGATCG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	111, 168, 825
RsaNI	GTAC	3 cut(s)	110, 167, 824
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	756
SaqAI	TTAA	4 cut(s)	207, 273, 588, 710
SatI	GCNGC	1 cut(s)	747
Sau3AI	GATC	3 cut(s)	193, 680, 716
Sau96I	GGNCC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	9 cut(s)	11, 115, 218, 325, 401, 505, 688, 751, 836
SfaNI	GCATC	2 cut(s)	298, 323
SfcI	CTRYAG	2 cut(s)	309, 786
Sfr274I	CTCGAG	1 cut(s)	778
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	778
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
Sse9I	AATT	6 cut(s)	268, 274, 386, 516, 554, 798
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	2 cut(s)	632, 835
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	4 cut(s)	231, 379, 566, 787
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	779
TasI	AATT	6 cut(s)	268, 274, 386, 516, 554, 798
TatI	WGTACW	2 cut(s)	166, 823
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	4 cut(s)	207, 273, 588, 710
Tru9I	TTAA	4 cut(s)	207, 273, 588, 710
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	2 cut(s)	97, 296
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	2 cut(s)	97, 296
TspDTI	ATGAA	4 cut(s)	261, 548, 743, 744
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	448
Van91I	CCANNNNNTGG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	2 cut(s)	386, 554
XbaI	TCTAGA	1 cut(s)	631
XhoI	CTCGAG	1 cut(s)	778
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	632, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.