Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015176

Physical Location & Seq

Genomic Coordinates Forward (+)

46086885 .. 46089356

Gene Structure 2472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGACGCCGACGACGAGACCTCCGGACCGATGATCGACGACGAGATCTACGCCAACGGCGGCGAGGGCGAAGACGAGAAGCGCAACCGTCCCATCATCTCCGGCGAGCCGCTCGACGTGGAGGCCTACGCGAGCCTCTACAGCGGCCGCACTAAGATCTCACGGCTTCTGTTCATCGCGGACCACAGCCGGGGCAACGAGGCGGTGGAGCTGGAGGCGCTGCGGATGGCCTACGACGAAATCAAGAAGGGCGAGAACACGCAGTGGTTAAGAGACGTGGCGCAGAGGATCGATGGGAGGTTGGGGCCGGAGTATCAGATGGACTTGGCTTGGTGCGAGTCTGTGGATAGGAGAGCCGAGCAGAAAAGGGAGAAGCTTGAGAACGAGCTCAATGCTTACAGAACAAATCTGATCAAAGAAAGCATAAGAATGGGCTACAATGATTTTGGAGATTTTCATTATTCTCATGGGCAACTGGGGGATGCTTTTAAGAACTATGTTCGTACTCGTGATTATTGTACTACATCAAAGCATATTGTTCATATGTGCATGTGTTCCATTCTGGTCAGCATAGAGATGGGTCAATTTACTCATGTCGCAAGCTATGTTAGCAAAGCAGAACAAACACCAGAAGCTCTGGACACAATTACTGTTGCAAAACTTCGCTGTGCTGCTGGATTGGCTCTCTTGGAAGCTAAGAAATACAAGCTTGCTGCTCGTAAGTTCTTGGAAACTGGGCATGAGTTAGGAAACCACTACAATGAAGTCATTGCACCTCAAGATATTGCAACGTATGGTGGGCTTTGTGCACTTGCAAGTTTTGACCGAACGGAGCTGAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000338 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI RPN7

Protein Analysis

281

Amino Acids

31.72

Weight (kDa)

5.22

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN7	PF10602	108 - 281	3.6e-55	26S proteasome subunit RPN7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61140
fragaria_vesca	FvH4_7g13330
malus_domestica	MD01G1050400.v1.1 MD07G1127800.v1.1
prunus_persica	Prupe.2G156700_v2.0.a1
pyrus_communis	pycom07g12320
rosa_chinensis	RchiOBHm_Chr1g0352641 RchiOBHm_Chr7g0198471
rosa_laevigata	RLG00000028324
rosa_multiflora	Rmu_sc0005118.1_g000005
rosa_roxburghii	Rroxscaffold_4G00302520
rosa_rugosa	Rorug01G0230400
rosa_samantha	Rh1AG243700 Rh1BG214300 Rh1CG227700 Rh1DG240400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	112
AccII	CGCG	2 cut(s)	131, 179
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	7 cut(s)	60, 110, 144, 148, 179, 203, 223
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	6
AdeI	CACNNNGTG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	505, 520
AfiI	CCNNNNNNNGG	1 cut(s)	190
AjiI	CACGTC	2 cut(s)	118, 277
AluBI	AGCT	8 cut(s)	211, 376, 388, 603, 635, 695, 709, 835
AluI	AGCT	8 cut(s)	211, 376, 388, 603, 635, 695, 709, 835
Alw21I	GWGCWC	2 cut(s)	390, 811
Alw26I	GTCTC	2 cut(s)	11, 267
Alw44I	GTGCAC	1 cut(s)	807
AlwI	GGATC	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	4 cut(s)	123, 145, 228, 305
ApaLI	GTGCAC	1 cut(s)	807
ApeKI	GCWGC	3 cut(s)	220, 671, 713
AspLEI	GCGC	3 cut(s)	84, 220, 283
AspS9I	GGNCC	3 cut(s)	26, 181, 305
AsuC2I	CCSGG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	26, 181
BaeGI	GKGCMC	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	390
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	390, 811
BbvI	GCAGC	3 cut(s)	207, 658, 700
BccI	CCATC	5 cut(s)	101, 220, 287, 313, 571
BceAI	ACGGC	2 cut(s)	73, 179
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	11, 267
BfmI	CTRYAG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	221
BglII	AGATCT	2 cut(s)	45, 156
BisI	GCNGC	7 cut(s)	61, 110, 145, 148, 221, 672, 714
BlsI	GCNGC	7 cut(s)	62, 111, 146, 149, 222, 673, 715
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	2 cut(s)	26, 181
BmgBI	CACGTC	2 cut(s)	118, 277
BmgT120I	GGNCC	3 cut(s)	26, 181, 305
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	2 cut(s)	485, 744
BmsI	GCATC	1 cut(s)	472
BmuI	ACTGGG	2 cut(s)	485, 744
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	233
BpuEI	CTTGAG	2 cut(s)	398, 762
BpuMI	CCSGG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	480, 739
Bse3DI	GCAATG	1 cut(s)	768
BseAI	TCCGGA	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	231, 487
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	768
BseNI	ACTGG	2 cut(s)	480, 739
BseSI	GKGCMC	1 cut(s)	811
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	3 cut(s)	207, 658, 700
Bsh1236I	CGCG	2 cut(s)	131, 179
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	4 cut(s)	125, 147, 230, 307
BshVI	ATCGAT	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	2 cut(s)	390, 811
BsiSI	CCGG	4 cut(s)	24, 102, 190, 308
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	11, 267
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	4 cut(s)	125, 147, 230, 307
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	390, 811
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	5 cut(s)	33, 45, 156, 288, 411
BspACI	CCGC	7 cut(s)	60, 110, 144, 148, 179, 203, 223
BspANI	GGCC	4 cut(s)	125, 147, 230, 307
BspDI	ATCGAT	1 cut(s)	291
BspEI	TCCGGA	1 cut(s)	23
BspFNI	CGCG	2 cut(s)	131, 179
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	768
BsrI	ACTGG	2 cut(s)	480, 739
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	5 cut(s)	33, 45, 156, 288, 411
BssNI	GRCGYC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	89, 652
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	4 cut(s)	107, 133, 601, 711
BstDEI	CTNAG	2 cut(s)	153, 696
BstF5I	GGATG	2 cut(s)	231, 487
BstFNI	CGCG	2 cut(s)	131, 179
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	3 cut(s)	84, 220, 283
BstKTI	GATC	5 cut(s)	36, 48, 159, 291, 414
BstMAI	GTCTC	2 cut(s)	11, 267
BstMBI	GATC	5 cut(s)	33, 45, 156, 288, 411
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 141, 217, 609, 680
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	811
BstUI	CGCG	2 cut(s)	131, 179
BstV1I	GCAGC	3 cut(s)	207, 658, 700
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	2 cut(s)	45, 156
BstYI	RGATCY	2 cut(s)	45, 156
BstZI	CGGCCG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	125, 147, 230, 307
BsuTUI	ATCGAT	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	160
BtrI	CACGTC	2 cut(s)	118, 277
BtsCI	GGATG	2 cut(s)	231, 487
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	4 cut(s)	107, 133, 601, 711
CciNI	GCGGCCGC	1 cut(s)	145
CfoI	GCGC	3 cut(s)	84, 220, 283
Cfr13I	GGNCC	3 cut(s)	26, 181, 305
ClaI	ATCGAT	1 cut(s)	291
CpoI	CGGWCCG	1 cut(s)	26
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	504, 519
CspI	CGGWCCG	1 cut(s)	26
CviAII	CATG	5 cut(s)	467, 550, 593, 740, 843
CviQI	GTAC	2 cut(s)	504, 519
DdeI	CTNAG	2 cut(s)	153, 696
DpnI	GATC	5 cut(s)	35, 47, 158, 290, 413
DpnII	GATC	5 cut(s)	33, 45, 156, 288, 411
DraIII	CACNNNGTG	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	388
EclXI	CGGCCG	1 cut(s)	145
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	26, 181
Eco52I	CGGCCG	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	5 cut(s)	470, 553, 596, 743, 846
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	5 cut(s)	466, 549, 592, 739, 842
FauNDI	CATATG	1 cut(s)	543
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	7 cut(s)	61, 110, 145, 148, 221, 672, 714
FokI	GGATG	2 cut(s)	238, 494
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	7 cut(s)	61, 110, 145, 148, 221, 672, 714
GlaI	GCGC	3 cut(s)	83, 219, 282
GluI	GCNGC	7 cut(s)	61, 110, 145, 148, 221, 672, 714
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	125, 147, 230, 307
HapII	CCGG	4 cut(s)	24, 102, 190, 308
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	3 cut(s)	84, 220, 283
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	5 cut(s)	470, 553, 596, 743, 846
Hin6I	GCGC	3 cut(s)	82, 218, 281
HinP1I	GCGC	3 cut(s)	82, 218, 281
HindIII	AAGCTT	2 cut(s)	374, 707
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	4 cut(s)	24, 102, 190, 308
Hpy166II	GTNNAC	1 cut(s)	809
Hpy188I	TCNGA	2 cut(s)	318, 411
Hpy188III	TCNNGA	5 cut(s)	24, 244, 509, 638, 779
Hpy8I	GTNNAC	1 cut(s)	809
Hpy99I	CGWCG	6 cut(s)	14, 17, 41, 44, 119, 239
HpyAV	CCTTC	2 cut(s)	241, 832
HpyCH4III	ACNGT	2 cut(s)	89, 652
HpyCH4IV	ACGT	3 cut(s)	117, 276, 791
HpyCH4V	TGCA	6 cut(s)	549, 656, 773, 788, 809, 815
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 141, 217, 609, 680
HpyF3I	CTNAG	2 cut(s)	153, 696
HpySE526I	ACGT	3 cut(s)	117, 276, 791
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	5 cut(s)	470, 553, 596, 743, 846
HspAI	GCGC	3 cut(s)	82, 218, 281
Kpn2I	TCCGGA	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	5 cut(s)	33, 45, 156, 288, 411
LmnI	GCTCC	2 cut(s)	208, 832
Lsp1109I	GCAGC	3 cut(s)	207, 658, 700
LweI	GCATC	1 cut(s)	472
MaeII	ACGT	3 cut(s)	117, 276, 791
MalI	GATC	5 cut(s)	35, 47, 158, 290, 413
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	5 cut(s)	33, 45, 156, 288, 411
MboII	GAAGA	1 cut(s)	83
MflI	RGATCY	2 cut(s)	45, 156
MhlI	GDGCHC	2 cut(s)	390, 811
MluCI	AATT	2 cut(s)	584, 645
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	9 cut(s)	31, 58, 115, 146, 193, 208, 279, 291, 786
MroI	TCCGGA	1 cut(s)	23
MseI	TTAA	2 cut(s)	269, 489
MslI	CAYNNNNRTG	3 cut(s)	428, 575, 759
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	4 cut(s)	24, 102, 190, 308
MspR9I	CCNGG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	131, 179
MwoI	GCNNNNNNNGC	5 cut(s)	66, 141, 217, 609, 680
NciI	CCSGG	1 cut(s)	191
NdeI	CATATG	1 cut(s)	543
NdeII	GATC	5 cut(s)	33, 45, 156, 288, 411
NlaIII	CATG	5 cut(s)	470, 553, 596, 743, 846
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	382
NotI	GCGGCCGC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	553
PceI	AGGCCT	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PkrI	GCNGC	7 cut(s)	62, 111, 146, 149, 222, 673, 715
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	3 cut(s)	26, 181, 305
PsuI	RGATCY	2 cut(s)	45, 156
RsaI	GTAC	2 cut(s)	505, 520
RsaNI	GTAC	2 cut(s)	504, 519
RseI	CAYNNNNRTG	3 cut(s)	428, 575, 759
Rsr2I	CGGWCCG	1 cut(s)	26
RsrII	CGGWCCG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	269, 489
SatI	GCNGC	7 cut(s)	61, 110, 145, 148, 221, 672, 714
Sau3AI	GATC	5 cut(s)	33, 45, 156, 288, 411
Sau96I	GGNCC	3 cut(s)	26, 181, 305
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	390, 811
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	2 cut(s)	26, 181
SmiMI	CAYNNNNRTG	3 cut(s)	428, 575, 759
SmlI	CTYRAG	2 cut(s)	377, 777
SmoI	CTYRAG	2 cut(s)	377, 777
Sse9I	AATT	2 cut(s)	584, 645
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	7 cut(s)	60, 110, 144, 148, 179, 203, 223
SstI	GAGCTC	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	89, 652
TaiI	ACGT	3 cut(s)	120, 279, 794
TaqI	TCGA	3 cut(s)	36, 114, 291
TaqII	GACCGA	2 cut(s)	43, 840
TasI	AATT	2 cut(s)	584, 645
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	4 cut(s)	63, 112, 147, 150
Tru1I	TTAA	2 cut(s)	269, 489
Tru9I	TTAA	2 cut(s)	269, 489
TscAI	CASTG	1 cut(s)	269
TseI	GCWGC	3 cut(s)	220, 671, 713
TspDTI	ATGAA	4 cut(s)	163, 446, 530, 777
TspGWI	ACGGA	1 cut(s)	845
TspRI	CASTG	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	807
VpaK11BI	GGWCC	2 cut(s)	26, 181
XceI	RCATGY	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.