RchiOBHm_Chr1g0358341

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016390
Physical Location & Seq
Reverse (-)
50396775 .. 50397239
465 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGAAGTACCACTTTTGTTCTTCAGGTGCTTTTCTCTTCATCTTCATCATTCTTCTGACAATCTGTTTGAGCATTGAAGCTCGAACCTACAATCCAAGTGGCAAAATAGTCGGTAAAATGCCTCCAGTGTCCGAGCATACAAAAGCAACCTTGACGATCAACAGCTTCGAGAAAGGTGGTGACGGTGGTGGACCGTCCAAATGTGACGGTAAATACCACTCCAATAACACCCCGATCGTGGCATTGTCCACCCGGTGGTACAACAATGGGAAAAGGTGTTCACACTACATTACCATATATGGTAATGGAAGGAGTGTGAAAGCCAAGGTTGTTGATGAGTGCGACTCAACAAAAGGATGTAATGATGACATCGTTGATGCCTCTAAAGCTGTTTGGAAGGCCTTGGGAGTTAAGGAAAGCGGTAGCGACTGGGGTGAAATGAAAATATTCTGGTCTGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.84

Weight (kDa)

8.7

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 38 - 154 1.3e-32 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 255
AciI CCGC 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 255
AfaI GTAC 2 cut(s) 8, 260
AfiI CCNNNNNNNGG 2 cut(s) 238, 255
AgsI TTSAA 1 cut(s) 77
AloI GAACNNNNNNTCC 4 cut(s) 76, 108, 262, 294
AluBI AGCT 3 cut(s) 80, 165, 389
AluI AGCT 3 cut(s) 80, 165, 389
AoxI GGCC 1 cut(s) 399
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
Asp700I GAANNNNTTC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 191, 446
AvaII GGWCC 1 cut(s) 191
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BcnI CCSGG 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 253
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 367, 448
BmuI ACTGGG 1 cut(s) 439
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BpmI CTGGAG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 324, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 255
Bse1I ACTGG 2 cut(s) 125, 434
BseDI CCNNGG 2 cut(s) 324, 402
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 2 cut(s) 238, 255
BseNI ACTGG 2 cut(s) 125, 434
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 238, 255
BsnI GGCC 1 cut(s) 401
Bsp143I GATC 2 cut(s) 156, 234
BspACI CCGC 1 cut(s) 420
BspANI GGCC 1 cut(s) 401
BsrI ACTGG 2 cut(s) 125, 434
BssECI CCNNGG 2 cut(s) 324, 402
BssMI GATC 2 cut(s) 156, 234
BssT1I CCWWGG 2 cut(s) 324, 402
Bst4CI ACNGT 3 cut(s) 185, 195, 209
Bst6I CTCTTC 1 cut(s) 41
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 2 cut(s) 159, 237
BstMBI GATC 2 cut(s) 156, 234
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 251
BsuRI GGCC 1 cut(s) 401
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 7, 259
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviJI RGCY 5 cut(s) 80, 165, 323, 389, 401
CviKI_1 RGCY 5 cut(s) 80, 165, 323, 389, 401
CviQI GTAC 2 cut(s) 7, 259
DpnI GATC 2 cut(s) 158, 236
DpnII GATC 2 cut(s) 156, 234
DraIII CACNNNGTG 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 324, 402
Eco147I AGGCCT 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 324, 402
ErhI CCWWGG 2 cut(s) 324, 402
FaiI YATR 4 cut(s) 138, 296, 298, 300
FalI AAGNNNNNCTT 1 cut(s) 28
FokI GGATG 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 401
HapII CCGG 1 cut(s) 253
HinfI GANTC 1 cut(s) 344
HpaII CCGG 1 cut(s) 253
HphI GGTGA 2 cut(s) 191, 446
Hpy166II GTNNAC 3 cut(s) 191, 249, 281
Hpy188I TCNGA 3 cut(s) 57, 133, 457
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 3 cut(s) 191, 249, 281
HpyAV CCTTC 2 cut(s) 303, 391
HpyCH4III ACNGT 3 cut(s) 185, 195, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
Kzo9I GATC 2 cut(s) 156, 234
LpnPI CCDG 5 cut(s) 9, 138, 266, 415, 436
LweI GCATC 2 cut(s) 367, 448
MaeIII GTNAC 2 cut(s) 179, 203
MalI GATC 2 cut(s) 158, 236
MboI GATC 2 cut(s) 156, 234
MboII GAAGA 4 cut(s) 12, 28, 34, 44
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 2 cut(s) 132, 391
MroXI GAANNNNTTC 1 cut(s) 446
MseI TTAA 1 cut(s) 411
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 386
NciI CCSGG 1 cut(s) 253
NdeII GATC 2 cut(s) 156, 234
NmuCI GTSAC 2 cut(s) 179, 203
PceI AGGCCT 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 446
PflMI CCANNNNNTGG 1 cut(s) 255
Ple19I CGATCG 1 cut(s) 237
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PspPI GGNCC 1 cut(s) 191
PvuI CGATCG 1 cut(s) 237
RsaI GTAC 2 cut(s) 8, 260
RsaNI GTAC 2 cut(s) 7, 259
SaqAI TTAA 1 cut(s) 411
Sau3AI GATC 2 cut(s) 156, 234
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 253
SetI ASST 9 cut(s) 28, 82, 89, 152, 167, 178, 278, 330, 391
SfaNI GCATC 2 cut(s) 367, 448
SinI GGWCC 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 401
SsiI CCGC 1 cut(s) 420
SspI AATATT 1 cut(s) 447
StuI AGGCCT 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 2 cut(s) 324, 402
TaaI ACNGT 3 cut(s) 185, 195, 209
TaqI TCGA 2 cut(s) 82, 168
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 2 cut(s) 179, 203
Tsp45I GTSAC 2 cut(s) 179, 203
TspDTI ATGAA 4 cut(s) 17, 28, 34, 455
TspRI CASTG 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.