Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019271

Physical Location & Seq

Genomic Coordinates Reverse (-)

51728955 .. 51729179

Gene Structure 225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCCGAGGTGATCAAGCATCCACGTGTCCTCCGTAAGATCCAAGAAGAGCTCGATTCAGTCGTGGGTCAACATAGAATGGTCAACGAATCAGACCTACCCCATCTTAACTATCTACACTGTGTCGTACGCGAAACCTTCCGCATGCATCCGGCGGACCCTTCCTCTAATTCTGTCGAAGAGAAGACGATAAAAAAGGTTGTGTGTGAGGAGGAAAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002933 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0022607 GO:0030198 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0042221 GO:0043062 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044550 GO:0045229 GO:0046394 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051791 GO:0051792 GO:0052722 GO:0055114 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0080110 GO:0085029 GO:0090567 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR p450

Protein Analysis

74

Amino Acids

8.62

Weight (kDa)

5.68

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 55	2.1e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019271)

Species	Orthologous Gene IDs
malus_domestica	MD06G1214500.v1.1
pyrus_communis	pycom06g19110
rosa_chinensis	RchiOBHm_Chr1g0359891 RchiOBHm_Chr1g0359921
rosa_multiflora	Rmu_sc0035715.1_g000001 Rmu_sc0038988.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061990
rosa_samantha	Rh1AG287700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	142, 155
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	129
AflIII	ACRYGT	1 cut(s)	25
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	54
BbrPI	CACGTG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	54
BccI	CCATC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	2 cut(s)	28, 157
BpiI	GAAGAC	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	19, 148
BseRI	GAGGAG	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	152
BsiWI	CGTACG	1 cut(s)	127
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	12, 39
BspACI	CCGC	2 cut(s)	142, 155
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	12, 39
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	42, 174
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	19, 148
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	15, 42
BstMBI	GATC	2 cut(s)	12, 39
BstNSI	RCATGY	1 cut(s)	148
BstUI	CGCG	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	19, 148
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	2 cut(s)	5, 52
CviKI_1	RGCY	2 cut(s)	5, 52
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	2 cut(s)	14, 41
DpnII	GATC	2 cut(s)	12, 39
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	42, 174
EarI	CTCTTC	2 cut(s)	42, 174
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	52
Eco72I	CACGTG	1 cut(s)	26
EcoICRI	GAGCTC	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	75, 146
FatI	CATG	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	12
FokI	GGATG	2 cut(s)	6, 135
FriOI	GRGCYC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	1 cut(s)	148
HincII	GTYRAC	2 cut(s)	71, 85
HindII	GTYRAC	2 cut(s)	71, 85
HinfI	GANTC	2 cut(s)	56, 89
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	71, 85
Hpy188I	TCNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	71, 85
HpyAV	CCTTC	2 cut(s)	148, 171
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	148
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 39
LguI	GCTCTTC	1 cut(s)	42
LpnPI	CCDG	1 cut(s)	165
LweI	GCATC	2 cut(s)	28, 157
MaeII	ACGT	1 cut(s)	25
MalI	GATC	2 cut(s)	14, 41
MboI	GATC	2 cut(s)	12, 39
MboII	GAAGA	3 cut(s)	59, 191, 196
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	4 cut(s)	41, 175, 202, 205
Mph1103I	ATGCAT	1 cut(s)	150
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	132
NdeII	GATC	2 cut(s)	12, 39
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	2 cut(s)	31, 60
PfeI	GAWTC	2 cut(s)	56, 89
Pfl23II	CGTACG	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	54
PspCI	CACGTG	1 cut(s)	26
PspLI	CGTACG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	12, 39
Sau96I	GGNCC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	6 cut(s)	12, 28, 54, 99, 140, 201
SfaNI	GCATC	2 cut(s)	28, 157
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	24
SphI	GCATGC	1 cut(s)	148
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	2 cut(s)	142, 155
SstI	GAGCTC	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	54, 177
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	56, 89
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.