RchiOBHm_Chr1g0360741

membrane protein At1g16860-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017362
Physical Location & Seq
Reverse (-)
52602997 .. 52606048
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1077 bp
ATGAGCAGTAATGTGGATCCCAAACATTATGAAATATCCAACTCCCCCCTCCAATTCTGCTTGAGCGACGTCGTTTCGTCCATCACATCCAATCCATTCCTGATGAGCCATTTTACACTCCTCTGTTACTGGTTCGGTAAAGGTGGGTGCTTTAGTGAGAGAGCGAGAGCAGCGAAGAGAGGAGTAATGAACGACCTCTCAAACGCGGTTCTGAGAGACCACCATACTAGTACCTTCAAGCCCATACCATCCCTTGTCCTCTACATTCTCATACCCATCTTTGTTTTAGGTCTCTCTGTCTCCATCTTCATTCTCATTGCCGTCCACAACGCCCTCTTCTTCGTCTTCTTCCTTTTGCTCTCTGCTCTCGTCCTCTCTTTCATTCTCTGGAACACGCGTCATTGGGCTACTAAAGCTGCAGTCTTGTTCTTTCTCAACTCTCTTCCTGAGTCTGACCTTCGCGTGGCTCAGCATGGAGAGCTGGTCAAGATCACTGGGCTTGTCTCATGCGGGAGTCTCTCCCTGGAATCTTCATATGAAAAGGCTACTAGATGTGTATATGCCTCTACTCTTTTATATGCATACAAGGGATTAACTCTTCAACCTAGAAATGTCAAGAGATCATGCTTCCAGTGGCACTTAGAATATTGTGAGAGATTCTCAACAGACTTTTTCTTGACTGATCGGAAATCTGGTCTTAGAGCTATTGTCAAAGCTGGTTCTGGTTGTAATCTTATCCCACTGATCTTTGAGAGCAAACTTGTCAACACAAGAAAATGCAGAATCCTCTCTCCTCACTTGACGAAATGGTTACGTGAGAGAAATCTCTCAGCTGAATCCCGTCTGCTACGTCTGGAGGAAGGGTATGTACAAGAAGGAAGCACTGTGACTGTATTTGGCATGCTGCACAGAAATAATGAGATGACTACAATTGTTCAGCCACCGGAAGTAATTTCCAGTGGTTGTCTATGGCGAAAACTGCTTCTCCCTGTTGACATTGATGGACTCATTCTAAGGGTCTCTCCGATGGCTGGGCAATCTGTCAACCAAAATTCTATACAACACCCGGAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

40.39

Weight (kDa)

9.25

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017362)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17310
malus_domestica MD07G1155900.v1.1
prunus_persica Prupe.2G194300_v2.0.a1
pyrus_communis pycom07g15290
rosa_chinensis RchiOBHm_Chr1g0360741
rosa_laevigata RLG00000027789
rosa_multiflora Rmu_ssc0000022.1_g000012
rosa_roxburghii Rroxscaffold_4G00295860
rosa_rugosa Rorug01G0281300
rosa_samantha Rh1AG293300 Rh1BG257700 Rh1DG287800
rosa_wichuraiana Rw1G025940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
AccII CGCG 3 cut(s) 206, 397, 462
AciI CCGC 2 cut(s) 206, 510
AclWI GGATC 2 cut(s) 11, 24
AcsI RAATTY 1 cut(s) 1051
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 2 cut(s) 232, 870
AfiI CCNNNNNNNGG 2 cut(s) 463, 1031
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 238, 602
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 5 cut(s) 416, 481, 704, 716, 833
AluI AGCT 5 cut(s) 416, 481, 704, 716, 833
Alw26I GTCTC 6 cut(s) 210, 296, 304, 508, 521, 1024
AlwI GGATC 2 cut(s) 11, 24
ApeKI GCWGC 3 cut(s) 170, 416, 904
ApoI RAATTY 1 cut(s) 1051
AsuC2I CCSGG 1 cut(s) 1067
BamHI GGATCC 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 852, 884
BbsI GAAGAC 1 cut(s) 337
BbvI GCAGC 3 cut(s) 182, 403, 891
BccI CCATC 6 cut(s) 89, 256, 284, 311, 995, 1021
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 524
BcnI CCSGG 1 cut(s) 1067
BcoDI GTCTC 6 cut(s) 210, 296, 304, 508, 521, 1024
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 3 cut(s) 228, 549, 606
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 3 cut(s) 171, 417, 905
BlpI GCTNAGC 1 cut(s) 468
BlsI GCNGC 3 cut(s) 172, 418, 906
Bme1390I CCNGG 2 cut(s) 524, 1067
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 524, 1067
BmrI ACTGGG 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 644, 676
BpmI CTGGAG 1 cut(s) 875
Bpu1102I GCTNAGC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 1067
BsaAI YACGTR 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 3 cut(s) 210, 296, 1024
BsaJI CCNNGG 1 cut(s) 522
BsaWI WCCGGW 1 cut(s) 943
BsaXI ACNNNNNCTCC 6 cut(s) 468, 498, 848, 878, 969, 999
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 1031
Bse1I ACTGG 4 cut(s) 134, 499, 631, 957
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 2 cut(s) 86, 248
BseLI CCNNNNNNNGG 2 cut(s) 463, 1031
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 4 cut(s) 203, 438, 482, 843
BseNI ACTGG 4 cut(s) 134, 499, 631, 957
BseRI GAGGAG 3 cut(s) 110, 195, 783
BseXI GCAGC 3 cut(s) 182, 403, 891
BseYI CCCAGC 1 cut(s) 1031
BsgI GTGCAG 1 cut(s) 890
Bsh1236I CGCG 3 cut(s) 206, 397, 462
BsiSI CCGG 2 cut(s) 944, 1067
BslI CCNNNNNNNGG 2 cut(s) 463, 1031
BsmAI GTCTC 6 cut(s) 210, 296, 304, 508, 521, 1024
Bso31I GGTCTC 3 cut(s) 210, 296, 1024
Bsp1407I TGTACA 1 cut(s) 868
Bsp143I GATC 5 cut(s) 16, 489, 620, 682, 744
Bsp1720I GCTNAGC 1 cut(s) 468
BspACI CCGC 2 cut(s) 206, 510
BspCNI CTCAG 4 cut(s) 204, 439, 481, 842
BspFNI CGCG 3 cut(s) 206, 397, 462
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 2 cut(s) 11, 24
BspTNI GGTCTC 3 cut(s) 210, 296, 1024
BsrDI GCAATG 1 cut(s) 315
BsrGI TGTACA 1 cut(s) 868
BsrI ACTGG 4 cut(s) 134, 499, 631, 957
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 5 cut(s) 16, 489, 620, 682, 744
BssNI GRCGYC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 2 cut(s) 886, 892
Bst6I CTCTTC 4 cut(s) 170, 341, 447, 603
BstACI GRCGYC 1 cut(s) 69
BstAUI TGTACA 1 cut(s) 868
BstBAI YACGTR 1 cut(s) 815
BstC8I GCNNGC 1 cut(s) 902
BstDEI CTNAG 7 cut(s) 212, 447, 468, 640, 698, 829, 1013
BstF5I GGATG 2 cut(s) 86, 248
BstFNI CGCG 3 cut(s) 206, 397, 462
BstKTI GATC 5 cut(s) 19, 492, 623, 685, 747
BstMAI GTCTC 6 cut(s) 210, 296, 304, 508, 521, 1024
BstMBI GATC 5 cut(s) 16, 489, 620, 682, 744
BstMWI GCNNNNNNNGC 4 cut(s) 170, 413, 478, 979
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 2 cut(s) 522, 1065
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 3 cut(s) 206, 397, 462
BstV1I GCAGC 3 cut(s) 182, 403, 891
BstV2I GAAGAC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BtsCI GGATG 2 cut(s) 86, 248
BtsIMutI CAGTG 5 cut(s) 492, 638, 740, 882, 964
Cac8I GCNNGC 1 cut(s) 902
CseI GACGC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 231, 869
CviAII CATG 4 cut(s) 473, 507, 624, 901
CviQI GTAC 2 cut(s) 231, 869
DdeI CTNAG 7 cut(s) 212, 447, 468, 640, 698, 829, 1013
DpnI GATC 5 cut(s) 18, 491, 622, 684, 746
DpnII GATC 5 cut(s) 16, 489, 620, 682, 744
Eam1104I CTCTTC 4 cut(s) 170, 341, 447, 603
EarI CTCTTC 4 cut(s) 170, 341, 447, 603
Eco31I GGTCTC 3 cut(s) 210, 296, 1024
EcoRII CCWGG 1 cut(s) 522
EcoT22I ATGCAT 1 cut(s) 583
FaeI CATG 4 cut(s) 476, 510, 627, 904
FatI CATG 4 cut(s) 472, 506, 623, 900
FauI CCCGC 1 cut(s) 503
FauNDI CATATG 1 cut(s) 535
Fnu4HI GCNGC 3 cut(s) 171, 417, 905
FokI GGATG 2 cut(s) 73, 235
Fsp4HI GCNGC 3 cut(s) 171, 417, 905
FspBI CTAG 3 cut(s) 228, 549, 606
GluI GCNGC 3 cut(s) 171, 417, 905
GsaI CCCAGC 1 cut(s) 1035
GsuI CTGGAG 1 cut(s) 875
HapII CCGG 2 cut(s) 944, 1067
HgaI GACGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 4 cut(s) 476, 510, 627, 904
HincII GTYRAC 3 cut(s) 766, 994, 1045
HindII GTYRAC 3 cut(s) 766, 994, 1045
HinfI GANTC 7 cut(s) 449, 514, 527, 657, 783, 836, 1005
HpaII CCGG 2 cut(s) 944, 1067
Hpy166II GTNNAC 4 cut(s) 325, 766, 994, 1045
Hpy188I TCNGA 4 cut(s) 213, 454, 687, 1026
Hpy188III TCNNGA 7 cut(s) 100, 388, 446, 487, 616, 676, 854
Hpy8I GTNNAC 4 cut(s) 325, 766, 994, 1045
Hpy99I CGWCG 2 cut(s) 71, 74
HpyAV CCTTC 4 cut(s) 244, 467, 854, 869
HpyCH4III ACNGT 2 cut(s) 886, 892
HpyCH4IV ACGT 3 cut(s) 69, 814, 850
HpyCH4V TGCA 4 cut(s) 419, 581, 780, 907
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 413, 478, 979
HpyF3I CTNAG 7 cut(s) 212, 447, 468, 640, 698, 829, 1013
HpySE526I ACGT 3 cut(s) 69, 814, 850
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 4 cut(s) 476, 510, 627, 904
Kzo9I GATC 5 cut(s) 16, 489, 620, 682, 744
Lsp1109I GCAGC 3 cut(s) 182, 403, 891
MaeI CTAG 3 cut(s) 228, 549, 606
MaeII ACGT 3 cut(s) 69, 814, 850
MaeIII GTNAC 3 cut(s) 125, 810, 886
MalI GATC 5 cut(s) 18, 491, 622, 684, 746
MboI GATC 5 cut(s) 16, 489, 620, 682, 744
MboII GAAGA 9 cut(s) 187, 298, 328, 331, 337, 340, 434, 522, 590
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 16
MluCI AATT 4 cut(s) 53, 930, 951, 1051
MluI ACGCGT 1 cut(s) 395
MlyI GAGTC 3 cut(s) 458, 523, 999
MmeI TCCRAC 1 cut(s) 63
Mph1103I ATGCAT 1 cut(s) 583
MseI TTAA 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 2 cut(s) 944, 1067
MspR9I CCNGG 2 cut(s) 524, 1067
MunI CAATTG 1 cut(s) 930
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 3 cut(s) 206, 397, 462
MwoI GCNNNNNNNGC 4 cut(s) 170, 413, 478, 979
NciI CCSGG 1 cut(s) 1067
NdeI CATATG 1 cut(s) 535
NdeII GATC 5 cut(s) 16, 489, 620, 682, 744
NlaIII CATG 4 cut(s) 476, 510, 627, 904
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 886
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 1 cut(s) 904
PaeI GCATGC 1 cut(s) 904
PfeI GAWTC 4 cut(s) 527, 657, 783, 836
PkrI GCNGC 3 cut(s) 172, 418, 906
PleI GAGTC 3 cut(s) 457, 522, 999
PpsI GAGTC 3 cut(s) 457, 522, 999
Ppu21I YACGTR 1 cut(s) 815
Psp6I CCWGG 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 1031
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 2 cut(s) 232, 870
RsaNI GTAC 2 cut(s) 231, 869
SaqAI TTAA 1 cut(s) 593
SatI GCNGC 3 cut(s) 171, 417, 905
Sau3AI GATC 5 cut(s) 16, 489, 620, 682, 744
SchI GAGTC 3 cut(s) 458, 523, 999
ScrFI CCNGG 2 cut(s) 524, 1067
SfcI CTRYAG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SpeI ACTAGT 1 cut(s) 227
SphI GCATGC 1 cut(s) 904
Sse9I AATT 4 cut(s) 53, 930, 951, 1051
SsiI CCGC 2 cut(s) 206, 510
SspI AATATT 1 cut(s) 647
SspMI CTAG 3 cut(s) 228, 549, 606
StyD4I CCNGG 2 cut(s) 522, 1065
TaaI ACNGT 2 cut(s) 886, 892
TaiI ACGT 3 cut(s) 72, 817, 853
TasI AATT 4 cut(s) 53, 930, 951, 1051
TatI WGTACW 1 cut(s) 868
TfiI GAWTC 4 cut(s) 527, 657, 783, 836
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TscAI CASTG 5 cut(s) 499, 638, 747, 889, 964
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 3 cut(s) 170, 416, 904
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 6 cut(s) 45, 203, 298, 370, 522, 552
TspRI CASTG 5 cut(s) 499, 638, 747, 889, 964
XapI RAATTY 1 cut(s) 1051
XceI RCATGY 1 cut(s) 904
XspI CTAG 3 cut(s) 228, 549, 606
ZraI GACGTC 1 cut(s) 70
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.