RchiOBHm_Chr1g0362931

DNL-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015054
Physical Location & Seq
Reverse (-)
54489124 .. 54491419
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 597 bp
ATGGCTGCTCGGATGTTGCAGAAGAGAATCGGCTCACTCCTCTTCCGCAATCAGCCTTCTCTCACCCAAGCGATCAAAGAACAATCTGTTCCTTCTGCATATTCTATCTTCAGCAGATTTCAGCTTGGTAAAAGAGATATTCAGACGGAAACGAAGCCAGCTAATCTTACAAATGAGGATCCTAAGTTGGAAAATCATGAAGCTGATAGTTTGAAGCCTAGGTGTGACTCAGATGACCAACCCTCTCACTGCCAGAAAGTTGTTGAGATCAAAATGCACGCTGAGTACAACTTGAAAACATCCCCAAGGCATGACCTTTGTATGGTTTTCACTTGCACAATCTGTAACACAAGAACAATGAAGACAGCTTCTCGAGAAGCATACGAGAAAGGTGTGGTGGTAGCGCGCTGTAATGGATGTGACAACCTCCACCTGTTTGCTGATCATCTTGGAATGTTTGGAGAGAAGTGTACCGTTGAGGACTTTCTGGCTGCTCGTGGGGAGGAGGTGAAGAAGGGTACTACTGATACACTGAATCTGACTATTGAAGATCTGGCTGGAAAGGACTTTGCTGGCAAGAAAGTGGAAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-DNL

Protein Analysis

198

Amino Acids

22.19

Weight (kDa)

6.99

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-DNL PF05180 108 - 168 6.9e-24 DNL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54826
fragaria_vesca FvH4_7g19000
malus_domestica MD01G1105600.v1.1 MD07G1171800.v1.1
pyrus_communis pycom01g13240 pycom07g16640
rosa_chinensis RchiOBHm_Chr1g0362931
rosa_laevigata RLG00000027611
rosa_multiflora Rmu_sc0001502.1_g000005
rosa_roxburghii Rroxscaffold_4G00293640
rosa_rugosa Rorug01G0302200
rosa_samantha Rh1AG311700 Rh1BG274800 Rh1CG292000 Rh1DG305500
rosa_wichuraiana Rw1G027620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 406
AciI CCGC 1 cut(s) 46
AclWI GGATC 2 cut(s) 173, 186
AcuI CTGAAG 1 cut(s) 94
AfaI GTAC 3 cut(s) 287, 472, 520
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 3 cut(s) 214, 295, 548
AluBI AGCT 4 cut(s) 124, 161, 203, 368
AluI AGCT 4 cut(s) 124, 161, 203, 368
AlwI GGATC 2 cut(s) 173, 186
Ama87I CYCGRG 1 cut(s) 372
ApeKI GCWGC 2 cut(s) 5, 491
AspA2I CCTAGG 1 cut(s) 218
AspLEI GCGC 2 cut(s) 406, 408
AsuHPI GGTGA 2 cut(s) 55, 520
AvaI CYCGRG 1 cut(s) 372
AvrII CCTAGG 1 cut(s) 218
BamHI GGATCC 1 cut(s) 178
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 478
BclI TGATCA 1 cut(s) 442
BfaI CTAG 1 cut(s) 219
BglII AGATCT 1 cut(s) 550
BisI GCNGC 2 cut(s) 6, 492
BlnI CCTAGG 1 cut(s) 218
BlsI GCNGC 2 cut(s) 7, 493
BmeT110I CYCGRG 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 218, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 218, 305
BseGI GGATG 3 cut(s) 18, 299, 422
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 243, 273
BsePI GCGCGC 1 cut(s) 404
BseRI GAGGAG 2 cut(s) 29, 518
BseXI GCAGC 1 cut(s) 478
Bsh1236I CGCG 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 372
Bsp143I GATC 5 cut(s) 72, 178, 267, 442, 550
BspACI CCGC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 242, 274
BspFNI CGCG 1 cut(s) 406
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 2 cut(s) 173, 186
BssECI CCNNGG 2 cut(s) 218, 305
BssHII GCGCGC 1 cut(s) 404
BssMI GATC 5 cut(s) 72, 178, 267, 442, 550
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 2 cut(s) 218, 305
Bst2BI CACGAG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 2 cut(s) 17, 47
BstC8I GCNNGC 4 cut(s) 159, 279, 406, 574
BstDEI CTNAG 3 cut(s) 183, 229, 282
BstF5I GGATG 3 cut(s) 18, 299, 422
BstFNI CGCG 1 cut(s) 406
BstHHI GCGC 2 cut(s) 406, 408
BstKTI GATC 5 cut(s) 75, 181, 270, 445, 553
BstMBI GATC 5 cut(s) 72, 178, 267, 442, 550
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 2 cut(s) 178, 550
BstYI RGATCY 2 cut(s) 178, 550
BtsCI GGATG 3 cut(s) 18, 299, 422
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 247, 530
Cac8I GCNNGC 4 cut(s) 159, 279, 406, 574
CciI TCATGA 1 cut(s) 196
CfoI GCGC 2 cut(s) 406, 408
Csp6I GTAC 3 cut(s) 286, 471, 519
CviAII CATG 2 cut(s) 197, 311
CviQI GTAC 3 cut(s) 286, 471, 519
DdeI CTNAG 3 cut(s) 183, 229, 282
DpnI GATC 5 cut(s) 74, 180, 269, 444, 552
DpnII GATC 5 cut(s) 72, 178, 267, 442, 550
Eam1104I CTCTTC 2 cut(s) 17, 47
EarI CTCTTC 2 cut(s) 17, 47
Eco130I CCWWGG 2 cut(s) 218, 305
Eco57I CTGAAG 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 218, 305
ErhI CCWWGG 2 cut(s) 218, 305
FaeI CATG 2 cut(s) 200, 314
FaiI YATR 5 cut(s) 100, 198, 312, 323, 382
FatI CATG 2 cut(s) 196, 310
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 6, 492
FokI GGATG 3 cut(s) 25, 286, 429
Fsp4HI GCNGC 2 cut(s) 6, 492
FspBI CTAG 1 cut(s) 219
GlaI GCGC 2 cut(s) 405, 407
GluI GCNGC 2 cut(s) 6, 492
HhaI GCGC 2 cut(s) 406, 408
Hin1II CATG 2 cut(s) 200, 314
Hin6I GCGC 2 cut(s) 404, 406
HinP1I GCGC 2 cut(s) 404, 406
HinfI GANTC 3 cut(s) 27, 227, 535
HphI GGTGA 2 cut(s) 55, 520
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 4 cut(s) 12, 144, 232, 540
Hpy188III TCNNGA 3 cut(s) 197, 372, 374
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 3 cut(s) 66, 102, 508
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 4 cut(s) 19, 98, 277, 336
HpyF3I CTNAG 3 cut(s) 183, 229, 282
Hsp92II CATG 2 cut(s) 200, 314
HspAI GCGC 2 cut(s) 404, 406
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 5 cut(s) 72, 178, 267, 442, 550
LpnPI CCDG 7 cut(s) 171, 266, 446, 473, 539, 543, 558
Lsp1109I GCAGC 1 cut(s) 478
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 3 cut(s) 224, 344, 419
MalI GATC 5 cut(s) 74, 180, 269, 444, 552
MboI GATC 5 cut(s) 72, 178, 267, 442, 550
MboII GAAGA 6 cut(s) 34, 34, 100, 373, 523, 560
MflI RGATCY 2 cut(s) 178, 550
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 7 cut(s) 50, 169, 253, 437, 472, 496, 499
MvnI CGCG 1 cut(s) 406
NdeII GATC 5 cut(s) 72, 178, 267, 442, 550
NlaIII CATG 2 cut(s) 200, 314
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 224, 419
PaeR7I CTCGAG 1 cut(s) 372
PagI TCATGA 1 cut(s) 196
PauI GCGCGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 27, 535
PkrI GCNGC 2 cut(s) 7, 493
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 180
PsuI RGATCY 2 cut(s) 178, 550
PteI GCGCGC 1 cut(s) 404
RsaI GTAC 3 cut(s) 287, 472, 520
RsaNI GTAC 3 cut(s) 286, 471, 519
SatI GCNGC 2 cut(s) 6, 492
Sau3AI GATC 5 cut(s) 72, 178, 267, 442, 550
SchI GAGTC 1 cut(s) 221
Sfr274I CTCGAG 1 cut(s) 372
SlaI CTCGAG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 219
StyI CCWWGG 2 cut(s) 218, 305
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 373
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 2 cut(s) 27, 535
TscAI CASTG 2 cut(s) 254, 537
TseFI GTSAC 2 cut(s) 224, 419
TseI GCWGC 2 cut(s) 5, 491
Tsp45I GTSAC 2 cut(s) 224, 419
TspDTI ATGAA 2 cut(s) 213, 374
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 2 cut(s) 254, 537
XhoI CTCGAG 1 cut(s) 372
XmaJI CCTAGG 1 cut(s) 218
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.