RchiOBHm_Chr1g0363411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016062
Physical Location & Seq
Forward (+)
54834557 .. 54836883
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGCATCTATGGCCCTCAACGATGATCAGAGACTCCTTCAAGCTTGATTACCTCAGAAGGCTGGAATGGAACCTCCAAAGAATGAATAGCCAAAAAGCATCATCAAGTTCAGTCAATCAGAAACTGCTGGACACCCAGAATGGTGCTTCAGGCAATGAAGAAGTGCCAGAAGTACCAAATTCAAAGGATCATATGCAGATCCTTCTGTCTTACTGTTTCTGCTGCGGAGCATTCGGAGATCACGTGGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.65

Weight (kDa)

5.82

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49015 AT5G49015 AT5G49015
fragaria_vesca FvH4_7g19600
malus_domestica MD01G1108600.v1.1
prunus_persica Prupe.2G213800_v2.0.a1
pyrus_communis pycom01g13560
rosa_chinensis RchiOBHm_Chr1g0363411
rosa_laevigata RLG00000027570
rosa_roxburghii Rroxscaffold_4G00293200
rosa_samantha Rh1AG315600 Rh1BG278900 Rh1CG295300 Rh1DG310000
rosa_wichuraiana Rw1G027950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 225
AclWI GGATC 2 cut(s) 193, 195
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 132
AcvI CACGTG 1 cut(s) 244
AfaI GTAC 1 cut(s) 174
AgsI TTSAA 2 cut(s) 40, 183
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 193, 195
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 12
BbrPI CACGTG 1 cut(s) 244
BbvI GCAGC 1 cut(s) 209
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 24
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 71
BmsI GCATC 2 cut(s) 13, 107
BsaAI YACGTR 1 cut(s) 244
BsaXI ACNNNNNCTCC 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 4 cut(s) 24, 187, 198, 238
BspACI CCGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 2 cut(s) 193, 195
BsrDI GCAATG 1 cut(s) 160
BssMI GATC 4 cut(s) 24, 187, 198, 238
Bst4CI ACNGT 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 53
BstKTI GATC 4 cut(s) 27, 190, 201, 241
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 4 cut(s) 24, 187, 198, 238
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 173
CviJI RGCY 4 cut(s) 13, 43, 61, 90
CviKI_1 RGCY 4 cut(s) 13, 43, 61, 90
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 53
DpnI GATC 4 cut(s) 26, 189, 200, 240
DpnII GATC 4 cut(s) 24, 187, 198, 238
Eco57I CTGAAG 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 3 cut(s) 10, 192, 194
FauNDI CATATG 1 cut(s) 192
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 223
HaeIII GGCC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 32
Hpy188I TCNGA 4 cut(s) 29, 56, 120, 236
HpyAV CCTTC 3 cut(s) 46, 51, 212
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 4, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 4 cut(s) 24, 187, 198, 238
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 5 cut(s) 47, 113, 135, 149, 180
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 2 cut(s) 13, 107
MaeII ACGT 1 cut(s) 243
MalI GATC 4 cut(s) 26, 189, 200, 240
MboI GATC 4 cut(s) 24, 187, 198, 238
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 198
MluCI AATT 1 cut(s) 178
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 3 cut(s) 25, 62, 83
Mph1103I ATGCAT 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 1 cut(s) 192
NdeII GATC 4 cut(s) 24, 187, 198, 238
NlaIV GGNNCC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 1 cut(s) 26
PmaCI CACGTG 1 cut(s) 244
PmlI CACGTG 1 cut(s) 244
PpsI GAGTC 1 cut(s) 26
Ppu21I YACGTR 1 cut(s) 244
PspCI CACGTG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 198
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 4 cut(s) 24, 187, 198, 238
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 26
SetI ASST 4 cut(s) 45, 54, 75, 246
SfaNI GCATC 2 cut(s) 13, 107
SgeI CNNG 8 cut(s) 52, 56, 74, 117, 140, 148, 162, 179
Sse9I AATT 1 cut(s) 178
SsiI CCGC 1 cut(s) 225
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 246
TasI AATT 1 cut(s) 178
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 98, 171
XapI RAATTY 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.