DNA polymerase processivity factor activity
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g20850 |
| rosa_chinensis | RchiOBHm_Chr1g0365091 |
| rosa_laevigata | RLG00000027445 |
| rosa_multiflora | Rmu_sc0008025.1_g000005 Rmu_ssc0000112.1_g000005 |
| rosa_rugosa | Rorug01G0319500 |
| rosa_samantha | Rh1BG289900 Rh1CG306600 Rh1DG321500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 245 |
| AatII | GACGTC | 1 cut(s) | 249 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 103 |
| AccII | CGCG | 1 cut(s) | 31 |
| AciI | CCGC | 3 cut(s) | 136, 230, 428 |
| AclWI | GGATC | 3 cut(s) | 101, 114, 211 |
| AcoI | YGGCCR | 2 cut(s) | 53, 210 |
| AcuI | CTGAAG | 1 cut(s) | 342 |
| AcyI | GRCGYC | 3 cut(s) | 150, 246, 553 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 103, 208 |
| AgsI | TTSAA | 2 cut(s) | 157, 406 |
| AluBI | AGCT | 7 cut(s) | 40, 64, 88, 114, 399, 422, 466 |
| AluI | AGCT | 7 cut(s) | 40, 64, 88, 114, 399, 422, 466 |
| Alw21I | GWGCWC | 3 cut(s) | 42, 66, 90 |
| Alw26I | GTCTC | 2 cut(s) | 126, 462 |
| AlwI | GGATC | 3 cut(s) | 101, 114, 211 |
| AoxI | GGCC | 4 cut(s) | 53, 129, 176, 210 |
| ApeKI | GCWGC | 3 cut(s) | 399, 463, 466 |
| AspS9I | GGNCC | 1 cut(s) | 177 |
| AsuHPI | GGTGA | 2 cut(s) | 241, 280 |
| AsuNHI | GCTAGC | 1 cut(s) | 422 |
| BalI | TGGCCA | 2 cut(s) | 55, 212 |
| BamHI | GGATCC | 1 cut(s) | 106 |
| BanII | GRGCYC | 3 cut(s) | 42, 66, 90 |
| Bbv12I | GWGCWC | 3 cut(s) | 42, 66, 90 |
| BbvI | GCAGC | 3 cut(s) | 386, 453, 475 |
| BccI | CCATC | 3 cut(s) | 188, 259, 260 |
| BceAI | ACGGC | 1 cut(s) | 394 |
| BcoDI | GTCTC | 2 cut(s) | 126, 462 |
| BfaI | CTAG | 3 cut(s) | 303, 423, 559 |
| BfmI | CTRYAG | 1 cut(s) | 528 |
| BisI | GCNGC | 4 cut(s) | 137, 400, 464, 467 |
| BlsI | GCNGC | 4 cut(s) | 138, 401, 465, 468 |
| BmgT120I | GGNCC | 1 cut(s) | 177 |
| BmiI | GGNNCC | 1 cut(s) | 108 |
| BmsI | GCATC | 1 cut(s) | 24 |
| BmtI | GCTAGC | 1 cut(s) | 426 |
| BsaHI | GRCGYC | 3 cut(s) | 150, 246, 553 |
| BsaJI | CCNNGG | 1 cut(s) | 102 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 103, 208 |
| Bse118I | RCCGGY | 1 cut(s) | 373 |
| Bse1I | ACTGG | 1 cut(s) | 470 |
| BseDI | CCNNGG | 1 cut(s) | 102 |
| BseGI | GGATG | 1 cut(s) | 316 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 103, 208 |
| BseMII | CTCAG | 2 cut(s) | 27, 154 |
| BseNI | ACTGG | 1 cut(s) | 470 |
| BseXI | GCAGC | 3 cut(s) | 386, 453, 475 |
| BseYI | CCCAGC | 1 cut(s) | 110 |
| Bsh1236I | CGCG | 1 cut(s) | 31 |
| Bsh1285I | CGRYCG | 2 cut(s) | 175, 384 |
| BshFI | GGCC | 4 cut(s) | 55, 131, 178, 212 |
| BsiEI | CGRYCG | 2 cut(s) | 175, 384 |
| BsiHKAI | GWGCWC | 3 cut(s) | 42, 66, 90 |
| BsiSI | CCGG | 1 cut(s) | 374 |
| BslFI | GGGAC | 1 cut(s) | 540 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 103, 208 |
| BsmAI | GTCTC | 2 cut(s) | 126, 462 |
| BsmFI | GGGAC | 1 cut(s) | 540 |
| BsnI | GGCC | 4 cut(s) | 55, 131, 178, 212 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 66, 90 |
| Bsp143I | GATC | 4 cut(s) | 106, 172, 216, 381 |
| Bsp68I | TCGCGA | 1 cut(s) | 31 |
| BspACI | CCGC | 3 cut(s) | 136, 230, 428 |
| BspANI | GGCC | 4 cut(s) | 55, 131, 178, 212 |
| BspCNI | CTCAG | 2 cut(s) | 28, 153 |
| BspFNI | CGCG | 1 cut(s) | 31 |
| BspLI | GGNNCC | 1 cut(s) | 108 |
| BspOI | GCTAGC | 1 cut(s) | 426 |
| BspPI | GGATC | 3 cut(s) | 101, 114, 211 |
| BspQI | GCTCTTC | 1 cut(s) | 71 |
| BsrFI | RCCGGY | 1 cut(s) | 373 |
| BsrI | ACTGG | 1 cut(s) | 470 |
| BssAI | RCCGGY | 1 cut(s) | 373 |
| BssECI | CCNNGG | 1 cut(s) | 102 |
| BssMI | GATC | 4 cut(s) | 106, 172, 216, 381 |
| BssNI | GRCGYC | 3 cut(s) | 150, 246, 553 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst4CI | ACNGT | 1 cut(s) | 355 |
| Bst6I | CTCTTC | 1 cut(s) | 71 |
| BstACI | GRCGYC | 3 cut(s) | 150, 246, 553 |
| BstC8I | GCNNGC | 4 cut(s) | 29, 77, 424, 428 |
| BstDEI | CTNAG | 2 cut(s) | 36, 140 |
| BstF5I | GGATG | 1 cut(s) | 316 |
| BstFNI | CGCG | 1 cut(s) | 31 |
| BstKTI | GATC | 4 cut(s) | 109, 175, 219, 384 |
| BstMAI | GTCTC | 2 cut(s) | 126, 462 |
| BstMBI | GATC | 4 cut(s) | 106, 172, 216, 381 |
| BstMCI | CGRYCG | 2 cut(s) | 175, 384 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 37, 61, 85 |
| BstSFI | CTRYAG | 1 cut(s) | 528 |
| BstUI | CGCG | 1 cut(s) | 31 |
| BstV1I | GCAGC | 3 cut(s) | 386, 453, 475 |
| BstX2I | RGATCY | 2 cut(s) | 106, 216 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 187 |
| BstYI | RGATCY | 2 cut(s) | 106, 216 |
| BsuRI | GGCC | 4 cut(s) | 55, 131, 178, 212 |
| BtsCI | GGATG | 1 cut(s) | 316 |
| BtuMI | TCGCGA | 1 cut(s) | 31 |
| Cac8I | GCNNGC | 4 cut(s) | 29, 77, 424, 428 |
| Cfr10I | RCCGGY | 1 cut(s) | 373 |
| Cfr13I | GGNCC | 1 cut(s) | 177 |
| CseI | GACGC | 2 cut(s) | 158, 542 |
| CviAII | CATG | 1 cut(s) | 208 |
| DdeI | CTNAG | 2 cut(s) | 36, 140 |
| DpnI | GATC | 4 cut(s) | 108, 174, 218, 383 |
| DpnII | GATC | 4 cut(s) | 106, 172, 216, 381 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 245 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 245 |
| EaeI | YGGCCR | 2 cut(s) | 53, 210 |
| Eam1104I | CTCTTC | 1 cut(s) | 71 |
| EarI | CTCTTC | 1 cut(s) | 71 |
| Ecl136II | GAGCTC | 3 cut(s) | 40, 64, 88 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco24I | GRGCYC | 3 cut(s) | 42, 66, 90 |
| Eco53kI | GAGCTC | 3 cut(s) | 40, 64, 88 |
| Eco57I | CTGAAG | 1 cut(s) | 342 |
| EcoICRI | GAGCTC | 3 cut(s) | 40, 64, 88 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| EcoT38I | GRGCYC | 3 cut(s) | 42, 66, 90 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| FaeI | CATG | 1 cut(s) | 211 |
| FaiI | YATR | 4 cut(s) | 12, 209, 359, 530 |
| FaqI | GGGAC | 1 cut(s) | 540 |
| FatI | CATG | 1 cut(s) | 207 |
| FauI | CCCGC | 1 cut(s) | 435 |
| Fnu4HI | GCNGC | 4 cut(s) | 137, 400, 464, 467 |
| FokI | GGATG | 1 cut(s) | 323 |
| FriOI | GRGCYC | 3 cut(s) | 42, 66, 90 |
| Fsp4HI | GCNGC | 4 cut(s) | 137, 400, 464, 467 |
| FspBI | CTAG | 3 cut(s) | 303, 423, 559 |
| GluI | GCNGC | 4 cut(s) | 137, 400, 464, 467 |
| GsaI | CCCAGC | 1 cut(s) | 114 |
| HaeIII | GGCC | 4 cut(s) | 55, 131, 178, 212 |
| HapII | CCGG | 1 cut(s) | 374 |
| HgaI | GACGC | 2 cut(s) | 158, 542 |
| Hin1I | GRCGYC | 3 cut(s) | 150, 246, 553 |
| Hin1II | CATG | 1 cut(s) | 211 |
| HincII | GTYRAC | 1 cut(s) | 481 |
| HindII | GTYRAC | 1 cut(s) | 481 |
| HinfI | GANTC | 1 cut(s) | 523 |
| HpaII | CCGG | 1 cut(s) | 374 |
| HphI | GGTGA | 2 cut(s) | 241, 280 |
| Hpy166II | GTNNAC | 4 cut(s) | 235, 280, 414, 481 |
| Hpy188I | TCNGA | 1 cut(s) | 143 |
| Hpy188III | TCNNGA | 1 cut(s) | 30 |
| Hpy8I | GTNNAC | 4 cut(s) | 235, 280, 414, 481 |
| Hpy99I | CGWCG | 3 cut(s) | 242, 245, 248 |
| HpyAV | CCTTC | 1 cut(s) | 163 |
| HpyCH4III | ACNGT | 1 cut(s) | 355 |
| HpyCH4IV | ACGT | 1 cut(s) | 246 |
| HpyCH4V | TGCA | 1 cut(s) | 494 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 37, 61, 85 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 140 |
| HpySE526I | ACGT | 1 cut(s) | 246 |
| Hsp92I | GRCGYC | 3 cut(s) | 150, 246, 553 |
| Hsp92II | CATG | 1 cut(s) | 211 |
| Kzo9I | GATC | 4 cut(s) | 106, 172, 216, 381 |
| LguI | GCTCTTC | 1 cut(s) | 71 |
| LpnPI | CCDG | 7 cut(s) | 110, 124, 159, 241, 333, 387, 483 |
| Lsp1109I | GCAGC | 3 cut(s) | 386, 453, 475 |
| LweI | GCATC | 1 cut(s) | 24 |
| MaeI | CTAG | 3 cut(s) | 303, 423, 559 |
| MaeII | ACGT | 1 cut(s) | 246 |
| MaeIII | GTNAC | 2 cut(s) | 247, 349 |
| MalI | GATC | 4 cut(s) | 108, 174, 218, 383 |
| MboI | GATC | 4 cut(s) | 106, 172, 216, 381 |
| MboII | GAAGA | 9 cut(s) | 58, 335, 338, 341, 344, 347, 350, 353, 356 |
| MflI | RGATCY | 2 cut(s) | 106, 216 |
| MhlI | GDGCHC | 3 cut(s) | 42, 66, 90 |
| MlsI | TGGCCA | 2 cut(s) | 55, 212 |
| MluCI | AATT | 2 cut(s) | 192, 489 |
| MluNI | TGGCCA | 2 cut(s) | 55, 212 |
| MlyI | GAGTC | 1 cut(s) | 517 |
| MnlI | CCTC | 4 cut(s) | 104, 209, 230, 535 |
| Mox20I | TGGCCA | 2 cut(s) | 55, 212 |
| MscI | TGGCCA | 2 cut(s) | 55, 212 |
| MseI | TTAA | 1 cut(s) | 450 |
| Msp20I | TGGCCA | 2 cut(s) | 55, 212 |
| MspA1I | CMGCKG | 2 cut(s) | 430, 466 |
| MspI | CCGG | 1 cut(s) | 374 |
| MvnI | CGCG | 1 cut(s) | 31 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 37, 61, 85 |
| NdeII | GATC | 4 cut(s) | 106, 172, 216, 381 |
| NheI | GCTAGC | 1 cut(s) | 422 |
| NlaIII | CATG | 1 cut(s) | 211 |
| NlaIV | GGNNCC | 1 cut(s) | 108 |
| NmeAIII | GCCGAG | 1 cut(s) | 439 |
| NmuCI | GTSAC | 1 cut(s) | 247 |
| NruI | TCGCGA | 1 cut(s) | 31 |
| PciSI | GCTCTTC | 1 cut(s) | 71 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 243 |
| PflFI | GACNNNGTC | 2 cut(s) | 245, 552 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 103 |
| PkrI | GCNGC | 4 cut(s) | 138, 401, 465, 468 |
| Ple19I | CGATCG | 2 cut(s) | 175, 384 |
| PleI | GAGTC | 1 cut(s) | 517 |
| PpsI | GAGTC | 1 cut(s) | 517 |
| Psp124BI | GAGCTC | 3 cut(s) | 42, 66, 90 |
| PspFI | CCCAGC | 1 cut(s) | 110 |
| PspN4I | GGNNCC | 1 cut(s) | 108 |
| PspPI | GGNCC | 1 cut(s) | 177 |
| PsuI | RGATCY | 2 cut(s) | 106, 216 |
| PsyI | GACNNNGTC | 2 cut(s) | 245, 552 |
| PvuI | CGATCG | 2 cut(s) | 175, 384 |
| PvuII | CAGCTG | 1 cut(s) | 466 |
| RruI | TCGCGA | 1 cut(s) | 31 |
| SacI | GAGCTC | 3 cut(s) | 42, 66, 90 |
| SapI | GCTCTTC | 1 cut(s) | 71 |
| SaqAI | TTAA | 1 cut(s) | 450 |
| SatI | GCNGC | 4 cut(s) | 137, 400, 464, 467 |
| Sau3AI | GATC | 4 cut(s) | 106, 172, 216, 381 |
| Sau96I | GGNCC | 1 cut(s) | 177 |
| SchI | GAGTC | 1 cut(s) | 517 |
| SduI | GDGCHC | 3 cut(s) | 42, 66, 90 |
| SfaNI | GCATC | 1 cut(s) | 24 |
| SfcI | CTRYAG | 1 cut(s) | 528 |
| Sse9I | AATT | 2 cut(s) | 192, 489 |
| SsiI | CCGC | 3 cut(s) | 136, 230, 428 |
| SspMI | CTAG | 3 cut(s) | 303, 423, 559 |
| SstI | GAGCTC | 3 cut(s) | 42, 66, 90 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 1 cut(s) | 355 |
| TaiI | ACGT | 1 cut(s) | 249 |
| TaqI | TCGA | 3 cut(s) | 69, 380, 384 |
| TasI | AATT | 2 cut(s) | 192, 489 |
| TauI | GCSGC | 1 cut(s) | 139 |
| Tru1I | TTAA | 1 cut(s) | 450 |
| Tru9I | TTAA | 1 cut(s) | 450 |
| TseFI | GTSAC | 1 cut(s) | 247 |
| TseI | GCWGC | 3 cut(s) | 399, 463, 466 |
| Tsp45I | GTSAC | 1 cut(s) | 247 |
| TspDTI | ATGAA | 2 cut(s) | 17, 380 |
| TspGWI | ACGGA | 1 cut(s) | 561 |
| Tth111I | GACNNNGTC | 2 cut(s) | 245, 552 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 103 |
| XspI | CTAG | 3 cut(s) | 303, 423, 559 |
| ZraI | GACGTC | 1 cut(s) | 247 |