Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018078

Physical Location & Seq

Genomic Coordinates Reverse (-)

57488376 .. 57489767

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTCACCAAGCTCATCATCTCACTTCTCCTCCTCCAACTCTCCACCACCGCTTTTTGCGATGCCGGCAGCCAAAATGTCGGCCCCATATTATTTTGTGTTGCAAGAGGAGGAACTAGCGACCAAAGTTTGTCAGCAAACATAGACTACGCTTGTAACCAGGCCAGCGTAAATTGTCAGCCTATACAACCAGGTGGTGCTTGTTTTACCAACGATCTCAAAACCCGGGCATCCTTCGCAATGAATGCGTACTACAACCTTTACCACTCACTAGGTGGCACCTGCGATTTCTCTGGTTCCGGACAAGTCACAAACTTTGACCCAAGCAAAGGCTCGTGCCAGTTTAGTAGTGGAAGTAAAGCTGTACCAATTAATACGCCGGGTAGTTCTGCCACACCTATACCCAAAACACCGAAACCTTCACCAGGAGGAGACAATGGTCCAGGCCTCAAGTGGTGCATAGCAAAACCCCATGCTGATATTCAAGCTTTGCAGAAAAACTTAGACTGGTTGTGCGGCATGATAGAATGCCAAGCCATACAACCAGGTGGTGCTTGCTATGACGAATCTGTCAGGTCCCGGGCATCCTTTGCTATGAATTCTTACTATCAGACAAAGGGTCGTAACGACTACAACTGTGATTTCTCTGGAACTGGACTCATCACCACTGTCGACCCAAGTCACGGTCAGTGTCGCTATCTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

235

Amino Acids

24.93

Weight (kDa)

7.92

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	32 - 101	2.8e-16	X8 domain
X8	PF07983	151 - 219	5.9e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22491
rosa_chinensis	RchiOBHm_Chr1g0367101
rosa_laevigata	RLG00000027298
rosa_multiflora	Rmu_sc0007424.1_g000005
rosa_roxburghii	Rroxscaffold_4G00289620
rosa_rugosa	Rorug01G0334400 Rorug01G0334500
rosa_samantha	Rh1BG301800 Rh1CG318100 Rh1DG334300
rosa_wichuraiana	Rw1G030340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
AasI	GACNNNNNNGTC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	672
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	2 cut(s)	51, 516
AcsI	RAATTY	1 cut(s)	598
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	251, 366
AfiI	CCNNNNNNNGG	3 cut(s)	329, 425, 683
AgsI	TTSAA	1 cut(s)	485
AhdI	GACNNNNNGTC	1 cut(s)	618
AjnI	CCWGG	5 cut(s)	159, 190, 424, 442, 544
AluBI	AGCT	3 cut(s)	13, 362, 488
AluI	AGCT	3 cut(s)	13, 362, 488
Alw26I	GTCTC	1 cut(s)	426
Ama87I	CYCGRG	2 cut(s)	225, 579
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	3 cut(s)	82, 162, 445
ApeKI	GCWGC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	598
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	83, 440, 576
AsuC2I	CCSGG	5 cut(s)	226, 227, 381, 580, 581
AsuHPI	GGTGA	2 cut(s)	414, 655
AvaI	CYCGRG	2 cut(s)	225, 579
AvaII	GGWCC	2 cut(s)	440, 576
BanI	GGYRCC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	81
BciT130I	CCWGG	5 cut(s)	161, 192, 426, 444, 546
BcnI	CCSGG	5 cut(s)	226, 227, 381, 580, 581
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	2 cut(s)	117, 272
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	70, 517
BlsI	GCNGC	2 cut(s)	71, 518
Bme18I	GGWCC	2 cut(s)	440, 576
BmeRI	GACNNNNNGTC	1 cut(s)	618
BmeT110I	CYCGRG	2 cut(s)	225, 579
BmgT120I	GGNCC	3 cut(s)	83, 440, 576
BmiI	GGNNCC	4 cut(s)	85, 280, 298, 578
BmsI	GCATC	3 cut(s)	52, 239, 593
BoxI	GACNNNNGTC	2 cut(s)	438, 678
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	5 cut(s)	226, 227, 381, 580, 581
BsaJI	CCNNGG	2 cut(s)	225, 579
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 425, 683
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	3 cut(s)	340, 512, 658
Bse3DI	GCAATG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	299
BseBI	CCWGG	5 cut(s)	161, 192, 426, 444, 546
BseDI	CCNNGG	2 cut(s)	225, 579
BseGI	GGATG	2 cut(s)	230, 584
BseLI	CCNNNNNNNGG	3 cut(s)	329, 425, 683
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	340, 512, 658
BseRI	GAGGAG	4 cut(s)	20, 23, 123, 444
BseXI	GCAGC	1 cut(s)	81
BshFI	GGCC	3 cut(s)	84, 164, 447
BshNI	GGYRCC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	225, 579
BsiSI	CCGG	5 cut(s)	66, 226, 300, 380, 580
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	3 cut(s)	329, 425, 683
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	2 cut(s)	250, 533
BsnI	GGCC	3 cut(s)	84, 164, 447
BsoBI	CYCGRG	2 cut(s)	225, 579
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	51, 516
BspANI	GGCC	3 cut(s)	84, 164, 447
BspEI	TCCGGA	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	85, 280, 298, 578
BspMI	ACCTGC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	3 cut(s)	340, 512, 658
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	225, 579
BssMI	GATC	1 cut(s)	214
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	5 cut(s)	161, 192, 426, 444, 546
Bst4CI	ACNGT	3 cut(s)	638, 670, 686
BstAPI	GCANNNNNTGC	2 cut(s)	245, 590
BstC8I	GCNNGC	3 cut(s)	67, 166, 556
BstDEI	CTNAG	1 cut(s)	502
BstEII	GGTNACC	1 cut(s)	4
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	230, 584
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 590
BstNI	CCWGG	5 cut(s)	161, 192, 426, 444, 546
BstPAI	GACNNNNGTC	2 cut(s)	438, 678
BstPI	GGTNACC	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	84, 164, 447
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	230, 584
BtsIMutI	CAGTG	2 cut(s)	666, 695
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	3 cut(s)	67, 166, 556
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	83, 440, 576
Cfr9I	CCCGGG	2 cut(s)	225, 579
CsiI	ACCWGGT	2 cut(s)	190, 544
Csp6I	GTAC	2 cut(s)	250, 365
CviAII	CATG	2 cut(s)	473, 520
CviQI	GTAC	2 cut(s)	250, 365
DdeI	CTNAG	1 cut(s)	502
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	275
DrdI	GACNNNNNNGTC	1 cut(s)	569
DriI	GACNNNNNGTC	1 cut(s)	618
DseDI	GACNNNNNNGTC	1 cut(s)	569
Eam1105I	GACNNNNNGTC	1 cut(s)	618
Eco147I	AGGCCT	1 cut(s)	447
Eco47I	GGWCC	2 cut(s)	440, 576
Eco88I	CYCGRG	2 cut(s)	225, 579
Eco91I	GGTNACC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	576
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	598
EcoRII	CCWGG	5 cut(s)	159, 190, 424, 442, 544
FaeI	CATG	2 cut(s)	476, 523
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	2 cut(s)	472, 519
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	70, 517
FokI	GGATG	2 cut(s)	217, 571
Fsp4HI	GCNGC	2 cut(s)	70, 517
FspBI	CTAG	2 cut(s)	117, 272
GluI	GCNGC	2 cut(s)	70, 517
HaeIII	GGCC	3 cut(s)	84, 164, 447
HapII	CCGG	5 cut(s)	66, 226, 300, 380, 580
Hin1II	CATG	2 cut(s)	476, 523
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	2 cut(s)	566, 657
HpaII	CCGG	5 cut(s)	66, 226, 300, 380, 580
HphI	GGTGA	2 cut(s)	414, 655
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	1 cut(s)	612
Hpy188III	TCNNGA	2 cut(s)	300, 648
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	2 cut(s)	244, 429
HpyCH4III	ACNGT	3 cut(s)	638, 670, 686
HpyCH4V	TGCA	3 cut(s)	104, 459, 493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 590
HpyF3I	CTNAG	1 cut(s)	502
Hsp92II	CATG	2 cut(s)	476, 523
Kpn2I	TCCGGA	1 cut(s)	299
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	3 cut(s)	52, 239, 593
MabI	ACCWGGT	2 cut(s)	190, 544
MaeI	CTAG	2 cut(s)	117, 272
MaeIII	GTNAC	5 cut(s)	4, 155, 307, 623, 680
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	692
MluCI	AATT	3 cut(s)	172, 369, 598
MlyI	GAGTC	1 cut(s)	651
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	6 cut(s)	41, 44, 101, 104, 422, 458
MroI	TCCGGA	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	1 cut(s)	372
MspI	CCGG	5 cut(s)	66, 226, 300, 380, 580
Mva1269I	GAATGC	2 cut(s)	250, 533
MvaI	CCWGG	5 cut(s)	161, 192, 426, 444, 546
MwoI	GCNNNNNNNGC	4 cut(s)	66, 236, 245, 590
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	5 cut(s)	226, 227, 381, 580, 581
NdeII	GATC	1 cut(s)	214
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	476, 523
NlaIV	GGNNCC	4 cut(s)	85, 280, 298, 578
NmuCI	GTSAC	3 cut(s)	4, 307, 680
PaqCI	CACCTGC	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	700
PctI	GAATGC	2 cut(s)	250, 533
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	566
PkrI	GCNGC	2 cut(s)	71, 518
PleI	GAGTC	1 cut(s)	651
PpsI	GAGTC	1 cut(s)	651
PpuMI	RGGWCCY	1 cut(s)	576
PshAI	GACNNNNGTC	2 cut(s)	438, 678
PshBI	ATTAAT	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	5 cut(s)	159, 190, 424, 442, 544
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	5 cut(s)	159, 190, 424, 442, 544
PspN4I	GGNNCC	4 cut(s)	85, 280, 298, 578
PspPI	GGNCC	3 cut(s)	83, 440, 576
PspPPI	RGGWCCY	1 cut(s)	576
RsaI	GTAC	2 cut(s)	251, 366
RsaNI	GTAC	2 cut(s)	250, 365
SalI	GTCGAC	1 cut(s)	671
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	70, 517
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	3 cut(s)	83, 440, 576
SchI	GAGTC	1 cut(s)	651
SexAI	ACCWGGT	2 cut(s)	190, 544
SfaNI	GCATC	3 cut(s)	52, 239, 593
SinI	GGWCC	2 cut(s)	440, 576
SmaI	CCCGGG	2 cut(s)	227, 581
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	3 cut(s)	172, 369, 598
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	2 cut(s)	51, 516
SspMI	CTAG	2 cut(s)	117, 272
StuI	AGGCCT	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	638, 670, 686
TaqI	TCGA	2 cut(s)	672, 703
TasI	AATT	3 cut(s)	172, 369, 598
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	673, 695
TseFI	GTSAC	3 cut(s)	4, 307, 680
TseI	GCWGC	1 cut(s)	69
Tsp45I	GTSAC	3 cut(s)	4, 307, 680
TspDTI	ATGAA	2 cut(s)	257, 611
TspMI	CCCGGG	2 cut(s)	225, 579
TspRI	CASTG	2 cut(s)	673, 695
VpaK11BI	GGWCC	2 cut(s)	440, 576
VspI	ATTAAT	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	3 cut(s)	272, 347, 450
XmaI	CCCGGG	2 cut(s)	225, 579
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	2 cut(s)	117, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.