RchiOBHm_Chr1g0371651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017062
Physical Location & Seq
Reverse (-)
60749891 .. 60750959
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
ATGATGAAGCACAACGATGATCACAGAAACAACAAGGTCTTCACCTCCCCCAAGCTCGTGGCCAAGGAGACCTCCGTGGCCAACTCGTCTTGCAGAGTCTACTACGGCGCCTCCGTCGGAGCGGTTCCGTTCATGTGGGAGTCGCAGCCAGGTACTCCTAAGCACACTCTTTCCGAGATCTCTCTTCCTCCTCTAACTCCTCCTCCTTCATATTCCTTCAACACAACTCCGAAACACTCGTCCTCATCCATGCAAAGAAGCGGCTCTAGAGCTAAAGCGCTTCTGGACTCCATTTTCCCTAGGGTGCTGAAATGGAGGAAGGCCGCCCGGAACATGTCGCCGTCTTCTTCTGTGTCGTGGTCGTCGTCCTCATCCTCATCGTGCTCGTCGACTTCTTCAAAGGGCACCCAGAAACATTACTCGGTTTCGAGGGTGCCATTTGGCTACGACGACGAGGATGAGGATCTAACGAGGTCCGGATCGCCTACTTCGACTTTGTGCTTTGGGATTAAACGCAGAGGTAGTGATTACTTCAGAGGCTGCAATTCGGTGCCGAAGATCATGTTTGCCTCCATGTCCATTGGTAGCCATGACCAATCACACCGAGGTCGTACTGCTGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.79

Weight (kDa)

9.81

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40475
fragaria_vesca FvH4_7g25590
prunus_persica Prupe.2G261100_v2.0.a1
pyrus_communis pycom07g20880
rosa_chinensis RchiOBHm_Chr1g0371651
rosa_laevigata RLG00000026948
rosa_multiflora Rmu_sc0001755.1_g000061
rosa_roxburghii Rroxscaffold_4G00285500
rosa_rugosa Rorug01G0365700
rosa_samantha Rh1AG375700 Rh1CG352300 Rh1DG370200
rosa_wichuraiana Rw1G033060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 107, 404, 433, 550
AccBSI CCGCTC 1 cut(s) 122
AccI GTMKAC 2 cut(s) 99, 389
AccIII TCCGGA 1 cut(s) 476
AciI CCGC 3 cut(s) 122, 261, 324
AclWI GGATC 2 cut(s) 471, 487
AcoI YGGCCR 2 cut(s) 60, 78
AcuI CTGAAG 1 cut(s) 517
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 154, 613
AfeI AGCGCT 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 2 cut(s) 220, 399
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 2 cut(s) 55, 272
AluI AGCT 2 cut(s) 55, 272
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 2 cut(s) 471, 487
AlwNI CAGNNNCTG 1 cut(s) 540
Aor13HI TCCGGA 1 cut(s) 476
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 3 cut(s) 60, 78, 321
ApeKI GCWGC 2 cut(s) 145, 540
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 2 cut(s) 110, 280
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 1 cut(s) 474
AvrII CCTAGG 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 407
BalI TGGCCA 2 cut(s) 62, 80
BanI GGYRCC 4 cut(s) 107, 404, 433, 550
BauI CACGAG 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 31, 336
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 157, 527
BceAI ACGGC 2 cut(s) 121, 325
BciT130I CCWGG 1 cut(s) 150
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 2 cut(s) 267, 300
BfoI RGCGCY 2 cut(s) 111, 281
BglII AGATCT 1 cut(s) 177
BisI GCNGC 4 cut(s) 146, 262, 324, 541
BlnI CCTAGG 1 cut(s) 299
BlsI GCNGC 4 cut(s) 147, 263, 325, 542
Bme1390I CCNGG 2 cut(s) 150, 328
Bme18I GGWCC 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 5 cut(s) 109, 126, 406, 435, 552
BmrFI CCNGG 2 cut(s) 150, 328
BpiI GAAGAC 2 cut(s) 31, 336
Bpu10I CCTNAGC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 4 cut(s) 63, 75, 299, 604
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 187, 217
Bse8I GATNNNNATC 1 cut(s) 462
BseAI TCCGGA 1 cut(s) 476
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 4 cut(s) 63, 75, 299, 604
BseGI GGATG 3 cut(s) 245, 371, 463
BseJI GATNNNNATC 1 cut(s) 462
BseMII CTCAG 1 cut(s) 609
BseRI GAGGAG 3 cut(s) 180, 189, 192
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 2 cut(s) 157, 527
BshFI GGCC 3 cut(s) 62, 80, 323
BshNI GGYRCC 4 cut(s) 107, 404, 433, 550
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 2 cut(s) 328, 477
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 3 cut(s) 62, 80, 323
Bso31I GGTCTC 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 386, 407
Bsp13I TCCGGA 1 cut(s) 476
Bsp143I GATC 5 cut(s) 19, 177, 463, 479, 558
BspACI CCGC 3 cut(s) 122, 261, 324
BspANI GGCC 3 cut(s) 62, 80, 323
BspCNI CTCAG 1 cut(s) 610
BspEI TCCGGA 1 cut(s) 476
BspLI GGNNCC 5 cut(s) 109, 126, 406, 435, 552
BspPI GGATC 2 cut(s) 471, 487
BspT107I GGYRCC 4 cut(s) 107, 404, 433, 550
BspTNI GGTCTC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 122
BssECI CCNNGG 4 cut(s) 63, 75, 299, 604
BssMI GATC 5 cut(s) 19, 177, 463, 479, 558
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 56
BssT1I CCWWGG 2 cut(s) 63, 299
Bst2BI CACGAG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 159, 618
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 3 cut(s) 245, 371, 463
BstH2I RGCGCY 2 cut(s) 111, 281
BstHHI GCGC 2 cut(s) 110, 280
BstKTI GATC 5 cut(s) 22, 180, 466, 482, 561
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 5 cut(s) 19, 177, 463, 479, 558
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 148, 326
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 2 cut(s) 157, 527
BstV2I GAAGAC 2 cut(s) 31, 336
BstX2I RGATCY 2 cut(s) 177, 463
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 2 cut(s) 177, 463
BsuRI GGCC 3 cut(s) 62, 80, 323
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 3 cut(s) 245, 371, 463
CaiI CAGNNNCTG 1 cut(s) 540
CfoI GCGC 2 cut(s) 110, 280
Cfr13I GGNCC 1 cut(s) 474
Csp6I GTAC 2 cut(s) 153, 612
CviAII CATG 6 cut(s) 133, 250, 334, 562, 574, 590
CviQI GTAC 2 cut(s) 153, 612
DdeI CTNAG 2 cut(s) 159, 618
DinI GGCGCC 1 cut(s) 109
DpnI GATC 5 cut(s) 21, 179, 465, 481, 560
DpnII GATC 5 cut(s) 19, 177, 463, 479, 558
EaeI YGGCCR 2 cut(s) 60, 78
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 2 cut(s) 63, 299
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 474
Eco47III AGCGCT 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 2 cut(s) 63, 299
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 63, 299
FaeI CATG 6 cut(s) 136, 253, 337, 565, 577, 593
FaiI YATR 7 cut(s) 134, 211, 251, 335, 563, 575, 591
FatI CATG 6 cut(s) 132, 249, 333, 561, 573, 589
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 2 cut(s) 99, 389
Fnu4HI GCNGC 4 cut(s) 146, 262, 324, 541
FokI GGATG 3 cut(s) 232, 358, 470
Fsp4HI GCNGC 4 cut(s) 146, 262, 324, 541
FspBI CTAG 2 cut(s) 267, 300
GlaI GCGC 2 cut(s) 109, 279
GluI GCNGC 4 cut(s) 146, 262, 324, 541
HaeII RGCGCY 2 cut(s) 111, 281
HaeIII GGCC 3 cut(s) 62, 80, 323
HapII CCGG 2 cut(s) 328, 477
HhaI GCGC 2 cut(s) 110, 280
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 6 cut(s) 136, 253, 337, 565, 577, 593
Hin6I GCGC 2 cut(s) 108, 278
HinP1I GCGC 2 cut(s) 108, 278
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 3 cut(s) 96, 140, 287
HpaII CCGG 2 cut(s) 328, 477
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 100, 390
Hpy188I TCNGA 4 cut(s) 119, 175, 231, 536
Hpy188III TCNNGA 3 cut(s) 267, 284, 477
Hpy8I GTNNAC 2 cut(s) 100, 390
Hpy99I CGWCG 5 cut(s) 119, 367, 391, 452, 455
HpyAV CCTTC 3 cut(s) 216, 226, 313
HpyCH4V TGCA 3 cut(s) 93, 253, 543
HpyF3I CTNAG 2 cut(s) 159, 618
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 6 cut(s) 136, 253, 337, 565, 577, 593
HspAI GCGC 2 cut(s) 108, 278
KasI GGCGCC 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 5 cut(s) 19, 177, 463, 479, 558
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 6 cut(s) 135, 162, 269, 341, 422, 490
Lsp1109I GCAGC 2 cut(s) 157, 527
MaeI CTAG 2 cut(s) 267, 300
MalI GATC 5 cut(s) 21, 179, 465, 481, 560
MbiI CCGCTC 1 cut(s) 122
MboI GATC 5 cut(s) 19, 177, 463, 479, 558
MboII GAAGA 6 cut(s) 31, 176, 336, 339, 387, 568
MflI RGATCY 2 cut(s) 177, 463
MhlI GDGCHC 2 cut(s) 386, 407
MlsI TGGCCA 2 cut(s) 62, 80
MluCI AATT 2 cut(s) 544, 622
MluNI TGGCCA 2 cut(s) 62, 80
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 3 cut(s) 105, 149, 281
MmeI TCCRAC 1 cut(s) 97
Mox20I TGGCCA 2 cut(s) 62, 80
MroI TCCGGA 1 cut(s) 476
MscI TGGCCA 2 cut(s) 62, 80
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 2 cut(s) 62, 80
MspI CCGG 2 cut(s) 328, 477
MspR9I CCNGG 2 cut(s) 150, 328
MvaI CCWGG 1 cut(s) 150
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 1 cut(s) 328
NdeII GATC 5 cut(s) 19, 177, 463, 479, 558
NlaIII CATG 6 cut(s) 136, 253, 337, 565, 577, 593
NlaIV GGNNCC 5 cut(s) 109, 126, 406, 435, 552
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 4 cut(s) 111, 362, 386, 488
PkrI GCNGC 4 cut(s) 147, 263, 325, 542
PleI GAGTC 3 cut(s) 104, 148, 281
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 3 cut(s) 104, 148, 281
PscI ACATGT 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 5 cut(s) 109, 126, 406, 435, 552
PspPI GGNCC 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 540
PsuI RGATCY 2 cut(s) 177, 463
RsaI GTAC 2 cut(s) 154, 613
RsaNI GTAC 2 cut(s) 153, 612
RseI CAYNNNNRTG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 4 cut(s) 146, 262, 324, 541
Sau3AI GATC 5 cut(s) 19, 177, 463, 479, 558
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 3 cut(s) 105, 149, 281
ScrFI CCNGG 2 cut(s) 150, 328
SduI GDGCHC 2 cut(s) 386, 407
SetI ASST 9 cut(s) 39, 47, 57, 74, 154, 274, 476, 523, 610
SfoI GGCGCC 1 cut(s) 109
SinI GGWCC 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 2 cut(s) 544, 622
SsiI CCGC 3 cut(s) 122, 261, 324
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 2 cut(s) 267, 300
StyD4I CCNGG 2 cut(s) 148, 326
StyI CCWWGG 2 cut(s) 63, 299
TaqI TCGA 3 cut(s) 389, 428, 491
TasI AATT 2 cut(s) 544, 622
TauI GCSGC 2 cut(s) 264, 326
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseI GCWGC 2 cut(s) 145, 540
TspDTI ATGAA 3 cut(s) 20, 121, 198
TspGWI ACGGA 3 cut(s) 64, 103, 117
VpaK11BI GGWCC 1 cut(s) 474
XbaI TCTAGA 1 cut(s) 266
XceI RCATGY 1 cut(s) 337
XmaJI CCTAGG 1 cut(s) 299
XmiI GTMKAC 2 cut(s) 99, 389
XspI CTAG 2 cut(s) 267, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.