RchiOBHm_Chr1g0375061

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015410
Physical Location & Seq
Forward (+)
62646008 .. 62648571
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
ATGGGAAATTCTTGCTGCTTCGTATGCGCGTGCGTCGACCAAGCCAGCATCGGCGTGATCGAGAAGTGGGGCCGGTTCCAGCGGCTGGCCGAACCCGGGTTCCACCTCCTCAACCCCTGCGCCGGTCAATGGGTCGCCGGAATCCTCTCCACCAGAATCCAATCCCTCGACGTCAAAATCGAGACCAAAACCAAGGATAATGTGTTTGTGCACTTGGTGTGCTGCATTCAGTACCGGGTGGTGAAGCAGAATGCCGATGATGCTTTTTACGAGCTGCAAAACCCGAGAGAGCAGATTCAGGCCTATGTGTTTGATGTGGTTAGAGCTCTGGTGCCGAGAATGACGTTGGATGAAGTCTTTGAACAGAAGGGTGAGGTTGCTAAATCTGTGTTGGAGGAACTCGAGAAGGTTATGAAGGAATATGGATACAGCATTGAGCATATGTTGATGGTTGACATCATACCAGATGCCTCTGTCCGCAAGGCAATGAATGAGATCAATGCAGCTCAAAGGCTTCAGCTTGCTAATGTATACAAAGGGGAGGCTGAGAAGGTGCTTCAGGTCAAAAGGGCAGAAGCTGATGCTGAGGCTAAGTACCTTGGAGGAGTTGGTGTCGCCAGGCAAAGGCAGGCAATCACAGATGGCTTGAGGGAGAACATCTTGAACTTCTCAGGCAAGGTGGAAGGCACATCATCAAAGGAGGTGATGGATCTTATCATGGTCACACAGTACTTTGATACAATCAAGGACCTGGGGAACTCGTCAAAGAACACCACAGTCTTCATACCTCATGGTCCTGGCCACATCAGAGATATCAGTGATCAGATACGCAGTGGGCTTATGGAAGCGTCCAGTGCCAAACTCAATGTTGACTAA

Protein Analysis

291

Amino Acids

32.48

Weight (kDa)

5.67

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 12 - 184 7.9e-27 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51570
fragaria_vesca FvH4_7g28140
malus_domestica MD01G1185100.v1.1 MD07G1257400.v1.1
prunus_persica Prupe.2G281600_v2.0.a1
pyrus_communis pycom01g19680 pycom07g23040
rosa_chinensis RchiOBHm_Chr1g0375061
rosa_laevigata RLG00000026691
rosa_multiflora Rmu_sc0000554.1_g000014
rosa_roxburghii Rroxscaffold_4G00283050
rosa_rugosa Rorug01G0387900
rosa_samantha Rh1AG398500 Rh1BG362600 Rh1CG376200
rosa_wichuraiana Rw1G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 85
AccI GTMKAC 2 cut(s) 36, 531
AccII CGCG 1 cut(s) 29
AciI CCGC 2 cut(s) 82, 478
AclWI GGATC 1 cut(s) 717
AcoI YGGCCR 2 cut(s) 87, 799
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 2 cut(s) 500, 542
AcyI GRCGYC 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 217
AfaI GTAC 3 cut(s) 233, 596, 731
AfiI CCNNNNNNNGG 5 cut(s) 85, 96, 122, 129, 624
AgsI TTSAA 2 cut(s) 362, 664
AjnI CCWGG 3 cut(s) 617, 750, 796
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 5 cut(s) 274, 326, 506, 520, 578
AluI AGCT 5 cut(s) 274, 326, 506, 520, 578
Alw21I GWGCWC 2 cut(s) 213, 328
Alw26I GTCTC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 717
AlwNI CAGNNNCTG 2 cut(s) 85, 578
Ama87I CYCGRG 3 cut(s) 95, 283, 401
AoxI GGCC 4 cut(s) 70, 87, 300, 799
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 4 cut(s) 15, 222, 274, 503
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 2 cut(s) 29, 122
AspS9I GGNCC 3 cut(s) 70, 748, 794
AsuC2I CCSGG 3 cut(s) 96, 97, 236
AsuHPI GGTGA 3 cut(s) 253, 383, 715
AvaI CYCGRG 3 cut(s) 95, 283, 401
AvaII GGWCC 2 cut(s) 748, 794
BaeGI GKGCMC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 801
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 772
Bbv12I GWGCWC 2 cut(s) 213, 328
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 4 cut(s) 2, 209, 261, 515
BccI CCATC 3 cut(s) 442, 635, 700
BciT130I CCWGG 3 cut(s) 619, 752, 798
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 3 cut(s) 96, 97, 236
BcoDI GTCTC 1 cut(s) 176
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 5 cut(s) 16, 83, 223, 275, 504
BlsI GCNGC 5 cut(s) 17, 84, 224, 276, 505
BmcAI AGTACT 1 cut(s) 731
Bme1390I CCNGG 6 cut(s) 96, 97, 236, 619, 752, 798
Bme18I GGWCC 2 cut(s) 748, 794
BmeT110I CYCGRG 3 cut(s) 95, 283, 401
BmgT120I GGNCC 3 cut(s) 70, 748, 794
BmiI GGNNCC 4 cut(s) 71, 77, 101, 333
BmrFI CCNGG 6 cut(s) 96, 97, 236, 619, 752, 798
BmsI GCATC 4 cut(s) 57, 250, 457, 571
BpiI GAAGAC 1 cut(s) 772
Bpu10I CCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 667
BpuMI CCSGG 3 cut(s) 96, 97, 236
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 95, 192, 598, 751
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 96, 122, 129, 624
Bse118I RCCGGY 2 cut(s) 72, 122
Bse1I ACTGG 1 cut(s) 852
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 3 cut(s) 619, 752, 798
BseDI CCNNGG 4 cut(s) 95, 192, 598, 751
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 5 cut(s) 85, 96, 122, 129, 624
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 3 cut(s) 537, 576, 684
BseNI ACTGG 1 cut(s) 852
BseRI GAGGAG 2 cut(s) 98, 618
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 4 cut(s) 2, 209, 261, 515
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 4 cut(s) 72, 89, 302, 801
BshNI GGYRCC 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 213, 328
BsiHKCI CYCGRG 3 cut(s) 95, 283, 401
BsiSI CCGG 5 cut(s) 73, 96, 123, 138, 235
BslI CCNNNNNNNGG 5 cut(s) 85, 96, 122, 129, 624
BsmAI GTCTC 1 cut(s) 176
BsmI GAATGC 2 cut(s) 225, 256
BsnI GGCC 4 cut(s) 72, 89, 302, 801
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 3 cut(s) 95, 283, 401
Bsp1286I GDGCHC 2 cut(s) 213, 328
Bsp143I GATC 4 cut(s) 57, 495, 709, 820
BspACI CCGC 2 cut(s) 82, 478
BspANI GGCC 4 cut(s) 72, 89, 302, 801
BspCNI CTCAG 3 cut(s) 538, 577, 683
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 4 cut(s) 71, 77, 101, 333
BspPI GGATC 1 cut(s) 717
BspT107I GGYRCC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 2 cut(s) 72, 122
BsrI ACTGG 1 cut(s) 852
BssAI RCCGGY 2 cut(s) 72, 122
BssECI CCNNGG 4 cut(s) 95, 192, 598, 751
BssMI GATC 4 cut(s) 57, 495, 709, 820
BssNAI GTATAC 1 cut(s) 532
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 192, 598
Bst1107I GTATAC 1 cut(s) 532
Bst2UI CCWGG 3 cut(s) 619, 752, 798
Bst4CI ACNGT 2 cut(s) 729, 778
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 5 cut(s) 31, 46, 87, 522, 630
BstDEI CTNAG 4 cut(s) 546, 585, 591, 670
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 2 cut(s) 29, 122
BstKTI GATC 4 cut(s) 60, 498, 712, 823
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 4 cut(s) 57, 495, 709, 820
BstMWI GCNNNNNNNGC 3 cut(s) 24, 260, 854
BstNI CCWGG 3 cut(s) 619, 752, 798
BstSCI CCNGG 6 cut(s) 94, 95, 234, 617, 750, 796
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 4 cut(s) 2, 209, 261, 515
BstV2I GAAGAC 1 cut(s) 772
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BstZ17I GTATAC 1 cut(s) 532
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 4 cut(s) 72, 89, 302, 801
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 838
BtsIMutI CAGTG 3 cut(s) 823, 838, 859
Cac8I GCNNGC 5 cut(s) 31, 46, 87, 522, 630
CaiI CAGNNNCTG 2 cut(s) 85, 578
CfoI GCGC 2 cut(s) 29, 122
Cfr10I RCCGGY 2 cut(s) 72, 122
Cfr13I GGNCC 3 cut(s) 70, 748, 794
Cfr9I CCCGGG 1 cut(s) 95
CseI GACGC 2 cut(s) 22, 837
Csp6I GTAC 3 cut(s) 232, 595, 730
CviAII CATG 2 cut(s) 718, 791
CviQI GTAC 3 cut(s) 232, 595, 730
DdeI CTNAG 4 cut(s) 546, 585, 591, 670
DpnI GATC 4 cut(s) 59, 497, 711, 822
DpnII GATC 4 cut(s) 57, 495, 709, 820
DraIII CACNNNGTG 1 cut(s) 217
EaeI YGGCCR 2 cut(s) 87, 799
Ecl136II GAGCTC 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 192, 598
Eco147I AGGCCT 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 176
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 2 cut(s) 748, 794
Eco53kI GAGCTC 1 cut(s) 326
Eco57I CTGAAG 2 cut(s) 500, 542
Eco88I CYCGRG 3 cut(s) 95, 283, 401
EcoICRI GAGCTC 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 748
EcoRII CCWGG 3 cut(s) 617, 750, 796
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 2 cut(s) 192, 598
EcoT38I GRGCYC 1 cut(s) 328
ErhI CCWWGG 2 cut(s) 192, 598
FaeI CATG 2 cut(s) 721, 794
FatI CATG 2 cut(s) 717, 790
FauNDI CATATG 1 cut(s) 441
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 2 cut(s) 36, 531
Fnu4HI GCNGC 5 cut(s) 16, 83, 223, 275, 504
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 5 cut(s) 16, 83, 223, 275, 504
GlaI GCGC 2 cut(s) 28, 121
GluI GCNGC 5 cut(s) 16, 83, 223, 275, 504
HaeIII GGCC 4 cut(s) 72, 89, 302, 801
HapII CCGG 5 cut(s) 73, 96, 123, 138, 235
HgaI GACGC 2 cut(s) 22, 837
HhaI GCGC 2 cut(s) 29, 122
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 2 cut(s) 721, 794
Hin6I GCGC 2 cut(s) 27, 120
HinP1I GCGC 2 cut(s) 27, 120
HincII GTYRAC 3 cut(s) 37, 454, 871
HindII GTYRAC 3 cut(s) 37, 454, 871
HinfI GANTC 3 cut(s) 141, 156, 295
HpaII CCGG 5 cut(s) 73, 96, 123, 138, 235
HphI GGTGA 3 cut(s) 253, 383, 715
Hpy166II GTNNAC 5 cut(s) 37, 211, 454, 532, 871
Hpy188I TCNGA 2 cut(s) 809, 825
Hpy188III TCNNGA 4 cut(s) 61, 181, 403, 661
Hpy8I GTNNAC 5 cut(s) 37, 211, 454, 532, 871
Hpy99I CGWCG 2 cut(s) 38, 173
HpyAV CCTTC 5 cut(s) 361, 400, 409, 544, 677
HpyCH4III ACNGT 2 cut(s) 729, 778
HpyCH4IV ACGT 2 cut(s) 171, 344
HpyCH4V TGCA 4 cut(s) 211, 225, 277, 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 260, 854
HpyF3I CTNAG 4 cut(s) 546, 585, 591, 670
HpySE526I ACGT 2 cut(s) 171, 344
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 2 cut(s) 721, 794
HspAI GCGC 2 cut(s) 27, 120
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 4 cut(s) 57, 495, 709, 820
Lsp1109I GCAGC 4 cut(s) 2, 209, 261, 515
LweI GCATC 4 cut(s) 57, 250, 457, 571
MaeII ACGT 2 cut(s) 171, 344
MaeIII GTNAC 1 cut(s) 721
MalI GATC 4 cut(s) 59, 497, 711, 822
MboI GATC 4 cut(s) 57, 495, 709, 820
MboII GAAGA 1 cut(s) 772
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 2 cut(s) 213, 328
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 1 cut(s) 7
MluNI TGGCCA 1 cut(s) 801
MmeI TCCRAC 2 cut(s) 327, 372
Mox20I TGGCCA 1 cut(s) 801
MscI TGGCCA 1 cut(s) 801
MslI CAYNNNNRTG 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 801
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 5 cut(s) 73, 96, 123, 138, 235
MspR9I CCNGG 6 cut(s) 96, 97, 236, 619, 752, 798
Mva1269I GAATGC 2 cut(s) 225, 256
MvaI CCWGG 3 cut(s) 619, 752, 798
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 24, 260, 854
NciI CCSGG 3 cut(s) 96, 97, 236
NdeI CATATG 1 cut(s) 441
NdeII GATC 4 cut(s) 57, 495, 709, 820
NlaIII CATG 2 cut(s) 721, 794
NlaIV GGNNCC 4 cut(s) 71, 77, 101, 333
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 721
PaeR7I CTCGAG 1 cut(s) 401
PceI AGGCCT 1 cut(s) 302
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 177
PctI GAATGC 2 cut(s) 225, 256
PfeI GAWTC 3 cut(s) 141, 156, 295
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 5 cut(s) 17, 84, 224, 276, 505
PpuMI RGGWCCY 1 cut(s) 748
Psp124BI GAGCTC 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 748
Psp6I CCWGG 3 cut(s) 617, 750, 796
PspGI CCWGG 3 cut(s) 617, 750, 796
PspN4I GGNNCC 4 cut(s) 71, 77, 101, 333
PspPI GGNCC 3 cut(s) 70, 748, 794
PspPPI RGGWCCY 1 cut(s) 748
PstNI CAGNNNCTG 2 cut(s) 85, 578
PsuI RGATCY 1 cut(s) 709
RsaI GTAC 3 cut(s) 233, 596, 731
RsaNI GTAC 3 cut(s) 232, 595, 730
RseI CAYNNNNRTG 1 cut(s) 53
SacI GAGCTC 1 cut(s) 328
SalI GTCGAC 1 cut(s) 35
SatI GCNGC 5 cut(s) 16, 83, 223, 275, 504
Sau3AI GATC 4 cut(s) 57, 495, 709, 820
Sau96I GGNCC 3 cut(s) 70, 748, 794
ScaI AGTACT 1 cut(s) 731
ScrFI CCNGG 6 cut(s) 96, 97, 236, 619, 752, 798
SduI GDGCHC 2 cut(s) 213, 328
SfaNI GCATC 4 cut(s) 57, 250, 457, 571
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 2 cut(s) 748, 794
SlaI CTCGAG 1 cut(s) 401
SmaI CCCGGG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 401, 646
SmoI CTYRAG 2 cut(s) 401, 646
Sse9I AATT 1 cut(s) 7
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 2 cut(s) 82, 478
SstI GAGCTC 1 cut(s) 328
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 6 cut(s) 94, 95, 234, 617, 750, 796
StyI CCWWGG 2 cut(s) 192, 598
TaaI ACNGT 2 cut(s) 729, 778
TaiI ACGT 2 cut(s) 174, 347
TaqI TCGA 5 cut(s) 36, 60, 168, 180, 402
TasI AATT 1 cut(s) 7
TatI WGTACW 1 cut(s) 729
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 3 cut(s) 141, 156, 295
TscAI CASTG 3 cut(s) 823, 838, 859
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 4 cut(s) 15, 222, 274, 503
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 4 cut(s) 366, 428, 503, 772
TspMI CCCGGG 1 cut(s) 95
TspRI CASTG 3 cut(s) 823, 838, 859
Van91I CCANNNNNTGG 1 cut(s) 85
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 748, 794
XapI RAATTY 1 cut(s) 7
XhoI CTCGAG 1 cut(s) 401
XmaI CCCGGG 1 cut(s) 95
XmiI GTMKAC 2 cut(s) 36, 531
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.