RchiOBHm_Chr1g0377041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018118
Physical Location & Seq
Reverse (-)
64163906 .. 64165306
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGCATTTTGGATGTTTCTCACCACAGGTTTGCGCAAAAGATGTTAAAATTGACGAGACAATACAAAAGGCTCTACTTCATGCTTCTGGTTGCCTGCGGCACATCACCGGGTGCTGTACCAGCAGTGAAGAAGTTCAATCCAAACCGAGAGTAGGAGCCGGGGTTTCTACTGATGAATTTAGGCATCTTGGTGCAGCTGATTCGCATACTGCAGGATCTCGATATAAGAAGATGAACCAAATAAGCGCTGTTGCTCATCAAGCTGTCCCTAGTGGACCAAACCCTCTTCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.46

Weight (kDa)

8.35

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018118)

Species Orthologous Gene IDs
prunus_persica Prupe.2G292900_v2.0.a1
pyrus_communis pycom07g24500
rosa_chinensis RchiOBHm_Chr1g0377041
rosa_roxburghii Rroxscaffold_4G00281480
rosa_rugosa Rorug01G0401200 Rorug01G0401200
rosa_samantha Rh1AG418200 Rh1AG418300 Rh1BG377400 Rh1CG391400 Rh1DG408100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 34
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 111
AfaI GTAC 1 cut(s) 118
AfeI AGCGCT 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 137
AluBI AGCT 2 cut(s) 197, 263
AluI AGCT 2 cut(s) 197, 263
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 223
Aor51HI AGCGCT 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 2 cut(s) 35, 248
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 2 cut(s) 109, 160
AsuHPI GGTGA 2 cut(s) 12, 97
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BcnI CCSGG 2 cut(s) 109, 160
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 249
BisI GCNGC 2 cut(s) 98, 195
BlsI GCNGC 2 cut(s) 99, 196
Bme1390I CCNGG 2 cut(s) 109, 160
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 109, 160
BmsI GCATC 1 cut(s) 193
BpuMI CCSGG 2 cut(s) 109, 160
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 108, 159
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 2 cut(s) 35, 248
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 120, 260
BstSCI CCNGG 2 cut(s) 107, 158
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 95
CfoI GCGC 2 cut(s) 35, 248
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 117
CviAII CATG 1 cut(s) 80
CviJI RGCY 4 cut(s) 71, 158, 197, 263
CviKI_1 RGCY 4 cut(s) 71, 158, 197, 263
CviQI GTAC 1 cut(s) 117
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
DraIII CACNNNGTG 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 83
FaiI YATR 3 cut(s) 81, 207, 225
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 98, 195
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 98, 195
FspBI CTAG 1 cut(s) 270
FspI TGCGCA 1 cut(s) 34
GlaI GCGC 2 cut(s) 34, 247
GluI GCNGC 2 cut(s) 98, 195
HaeII RGCGCY 1 cut(s) 249
HapII CCGG 2 cut(s) 108, 159
HhaI GCGC 2 cut(s) 35, 248
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 2 cut(s) 33, 246
HinP1I GCGC 2 cut(s) 33, 246
HinfI GANTC 1 cut(s) 200
HpaII CCGG 2 cut(s) 108, 159
HphI GGTGA 2 cut(s) 12, 97
Hpy166II GTNNAC 1 cut(s) 275
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 1 cut(s) 275
HpyCH4V TGCA 3 cut(s) 4, 194, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 260
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 2 cut(s) 33, 246
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 7 cut(s) 11, 72, 107, 121, 133, 172, 198
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 270
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 3 cut(s) 140, 241, 278
MflI RGATCY 1 cut(s) 215
MluCI AATT 3 cut(s) 48, 176, 292
MnlI CCTC 1 cut(s) 294
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 45, 295
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 108, 159
MspR9I CCNGG 2 cut(s) 109, 160
MwoI GCNNNNNNNGC 2 cut(s) 120, 260
NciI CCSGG 2 cut(s) 109, 160
NdeII GATC 1 cut(s) 215
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 157
NsbI TGCGCA 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 99, 196
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 275
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 2 cut(s) 45, 295
SatI GCNGC 2 cut(s) 98, 195
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 109, 160
SetI ASST 3 cut(s) 30, 199, 265
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 3 cut(s) 48, 176, 292
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 107, 158
TaqI TCGA 1 cut(s) 220
TasI AATT 3 cut(s) 48, 176, 292
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 45, 295
Tru9I TTAA 2 cut(s) 45, 295
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 68, 189, 248
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.