RNA polymerase sigma factor sigE, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24120 AT5G24120 AT5G24120 |
| fragaria_vesca | FvH4_7g31060 FvH4_7g31060 |
| malus_domestica | MD07G1285600.v1.1 |
| prunus_persica | Prupe.2G307500_v2.0.a1 Prupe.2G307500_v2.0.a1 |
| pyrus_communis | pycom07g25910 |
| rosa_chinensis | RchiOBHm_Chr1g0380131 |
| rosa_laevigata | RLG00000026328 |
| rosa_multiflora | Rmu_sc0001232.1_g000016 |
| rosa_roxburghii | Rroxscaffold_4G00279650 |
| rosa_rugosa | Rorug01G0417700 Rorug01G0417800 Rorug01G0417900 Rorug01G0418000 Rorug01G0418000 |
| rosa_samantha | Rh1AG443000 Rh1BG397900 Rh1CG411400 Rh1DG428700 |
| rosa_wichuraiana | Rw1G038460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1280 |
| Acc36I | ACCTGC | 1 cut(s) | 1339 |
| AccI | GTMKAC | 1 cut(s) | 1533 |
| AccII | CGCG | 1 cut(s) | 137 |
| AciI | CCGC | 2 cut(s) | 1106, 1324 |
| AclI | AACGTT | 1 cut(s) | 83 |
| AclWI | GGATC | 1 cut(s) | 1037 |
| AcsI | RAATTY | 3 cut(s) | 926, 1188, 1274 |
| AcuI | CTGAAG | 2 cut(s) | 354, 1394 |
| AfaI | GTAC | 3 cut(s) | 162, 314, 796 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 61, 770, 943 |
| AflIII | ACRYGT | 1 cut(s) | 135 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 806, 838 |
| Alw26I | GTCTC | 3 cut(s) | 323, 728, 1084 |
| AlwI | GGATC | 1 cut(s) | 1037 |
| Ama87I | CYCGRG | 2 cut(s) | 326, 1527 |
| AoxI | GGCC | 4 cut(s) | 1087, 1221, 1411, 1500 |
| ApeKI | GCWGC | 6 cut(s) | 236, 290, 293, 321, 533, 839 |
| ApoI | RAATTY | 3 cut(s) | 926, 1188, 1274 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 322, 354 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1479 |
| AspLEI | GCGC | 2 cut(s) | 148, 321 |
| AspS9I | GGNCC | 4 cut(s) | 190, 920, 1221, 1501 |
| AsuHPI | GGTGA | 4 cut(s) | 785, 1325, 1405, 1439 |
| AsuII | TTCGAA | 2 cut(s) | 547, 1483 |
| AvaI | CYCGRG | 2 cut(s) | 326, 1527 |
| AvaII | GGWCC | 2 cut(s) | 190, 920 |
| AxyI | CCTNAGG | 1 cut(s) | 150 |
| BanII | GRGCYC | 1 cut(s) | 56 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1524, 1556 |
| BauI | CACGAG | 1 cut(s) | 1074 |
| BbsI | GAAGAC | 1 cut(s) | 1228 |
| BbvCI | CCTCAGC | 1 cut(s) | 783 |
| BbvI | GCAGC | 6 cut(s) | 223, 277, 280, 333, 520, 826 |
| BccI | CCATC | 3 cut(s) | 353, 1049, 1412 |
| BceAI | ACGGC | 2 cut(s) | 984, 1318 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1508, 1542 |
| BclI | TGATCA | 2 cut(s) | 369, 1395 |
| BcoDI | GTCTC | 3 cut(s) | 323, 728, 1084 |
| BfaI | CTAG | 4 cut(s) | 21, 33, 200, 779 |
| BfmI | CTRYAG | 1 cut(s) | 740 |
| BfuAI | ACCTGC | 1 cut(s) | 1339 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1419 |
| BisI | GCNGC | 6 cut(s) | 237, 291, 294, 322, 534, 840 |
| BlsI | GCNGC | 6 cut(s) | 238, 292, 295, 323, 535, 841 |
| Bme18I | GGWCC | 2 cut(s) | 190, 920 |
| BmeT110I | CYCGRG | 2 cut(s) | 326, 1527 |
| BmgT120I | GGNCC | 4 cut(s) | 190, 920, 1221, 1501 |
| BmiI | GGNNCC | 1 cut(s) | 255 |
| BmsI | GCATC | 2 cut(s) | 74, 1528 |
| BoxI | GACNNNNGTC | 1 cut(s) | 939 |
| BpiI | GAAGAC | 1 cut(s) | 1228 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 640, 672 |
| BpmI | CTGGAG | 2 cut(s) | 522, 642 |
| Bpu10I | CCTNAGC | 1 cut(s) | 783 |
| Bpu14I | TTCGAA | 2 cut(s) | 547, 1483 |
| BpuEI | CTTGAG | 2 cut(s) | 1112, 1499 |
| Bsa29I | ATCGAT | 1 cut(s) | 1353 |
| BsaI | GGTCTC | 1 cut(s) | 728 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 61, 770, 943 |
| Bse118I | RCCGGY | 1 cut(s) | 1320 |
| Bse1I | ACTGG | 4 cut(s) | 279, 539, 641, 659 |
| Bse21I | CCTNAGG | 1 cut(s) | 150 |
| BseCI | ATCGAT | 1 cut(s) | 1353 |
| BseGI | GGATG | 1 cut(s) | 1519 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 61, 770, 943 |
| BseMII | CTCAG | 6 cut(s) | 39, 164, 666, 774, 1188, 1354 |
| BseNI | ACTGG | 4 cut(s) | 279, 539, 641, 659 |
| BseRI | GAGGAG | 2 cut(s) | 263, 602 |
| BseXI | GCAGC | 6 cut(s) | 223, 277, 280, 333, 520, 826 |
| Bsh1236I | CGCG | 1 cut(s) | 137 |
| BshFI | GGCC | 4 cut(s) | 1089, 1223, 1413, 1502 |
| BshVI | ATCGAT | 1 cut(s) | 1353 |
| BsiHKCI | CYCGRG | 2 cut(s) | 326, 1527 |
| BsiSI | CCGG | 3 cut(s) | 871, 1003, 1321 |
| BslFI | GGGAC | 1 cut(s) | 972 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 61, 770, 943 |
| BsmAI | GTCTC | 3 cut(s) | 323, 728, 1084 |
| BsmFI | GGGAC | 1 cut(s) | 972 |
| BsmI | GAATGC | 2 cut(s) | 1158, 1255 |
| BsnI | GGCC | 4 cut(s) | 1089, 1223, 1413, 1502 |
| Bso31I | GGTCTC | 1 cut(s) | 728 |
| BsoBI | CYCGRG | 2 cut(s) | 326, 1527 |
| Bsp119I | TTCGAA | 2 cut(s) | 547, 1483 |
| Bsp1286I | GDGCHC | 1 cut(s) | 56 |
| Bsp1407I | TGTACA | 1 cut(s) | 312 |
| Bsp143I | GATC | 7 cut(s) | 77, 369, 399, 619, 976, 1029, 1395 |
| BspACI | CCGC | 2 cut(s) | 1106, 1324 |
| BspANI | GGCC | 4 cut(s) | 1089, 1223, 1413, 1502 |
| BspCNI | CTCAG | 6 cut(s) | 38, 163, 667, 775, 1189, 1353 |
| BspDI | ATCGAT | 1 cut(s) | 1353 |
| BspFNI | CGCG | 1 cut(s) | 137 |
| BspHI | TCATGA | 2 cut(s) | 1207, 1506 |
| BspLI | GGNNCC | 1 cut(s) | 255 |
| BspMAI | CTGCAG | 1 cut(s) | 744 |
| BspMI | ACCTGC | 1 cut(s) | 1339 |
| BspPI | GGATC | 1 cut(s) | 1037 |
| BspQI | GCTCTTC | 2 cut(s) | 723, 1341 |
| BspT104I | TTCGAA | 2 cut(s) | 547, 1483 |
| BspTNI | GGTCTC | 1 cut(s) | 728 |
| BsrFI | RCCGGY | 1 cut(s) | 1320 |
| BsrGI | TGTACA | 1 cut(s) | 312 |
| BsrI | ACTGG | 4 cut(s) | 279, 539, 641, 659 |
| BssAI | RCCGGY | 1 cut(s) | 1320 |
| BssMI | GATC | 7 cut(s) | 77, 369, 399, 619, 976, 1029, 1395 |
| BssSI | CACGAG | 1 cut(s) | 1074 |
| Bst2BI | CACGAG | 1 cut(s) | 1074 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| Bst6I | CTCTTC | 4 cut(s) | 422, 723, 1248, 1341 |
| BstAUI | TGTACA | 1 cut(s) | 312 |
| BstBI | TTCGAA | 2 cut(s) | 547, 1483 |
| BstC8I | GCNNGC | 2 cut(s) | 1038, 1347 |
| BstDEI | CTNAG | 6 cut(s) | 25, 150, 675, 783, 1197, 1340 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 941 |
| BstF5I | GGATG | 1 cut(s) | 1519 |
| BstFNI | CGCG | 1 cut(s) | 137 |
| BstHHI | GCGC | 2 cut(s) | 148, 321 |
| BstKTI | GATC | 7 cut(s) | 80, 372, 402, 622, 979, 1032, 1398 |
| BstMAI | GTCTC | 3 cut(s) | 323, 728, 1084 |
| BstMBI | GATC | 7 cut(s) | 77, 369, 399, 619, 976, 1029, 1395 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 143, 1419 |
| BstNSI | RCATGY | 1 cut(s) | 1040 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 939 |
| BstSFI | CTRYAG | 1 cut(s) | 740 |
| BstUI | CGCG | 1 cut(s) | 137 |
| BstV1I | GCAGC | 6 cut(s) | 223, 277, 280, 333, 520, 826 |
| BstV2I | GAAGAC | 1 cut(s) | 1228 |
| Bsu15I | ATCGAT | 1 cut(s) | 1353 |
| Bsu36I | CCTNAGG | 1 cut(s) | 150 |
| BsuRI | GGCC | 4 cut(s) | 1089, 1223, 1413, 1502 |
| BsuTUI | ATCGAT | 1 cut(s) | 1353 |
| BtgZI | GCGATG | 1 cut(s) | 453 |
| BtsCI | GGATG | 1 cut(s) | 1519 |
| BtsIMutI | CAGTG | 1 cut(s) | 409 |
| BveI | ACCTGC | 1 cut(s) | 1339 |
| Cac8I | GCNNGC | 2 cut(s) | 1038, 1347 |
| CciI | TCATGA | 2 cut(s) | 1207, 1506 |
| CfoI | GCGC | 2 cut(s) | 148, 321 |
| Cfr10I | RCCGGY | 1 cut(s) | 1320 |
| Cfr13I | GGNCC | 4 cut(s) | 190, 920, 1221, 1501 |
| ClaI | ATCGAT | 1 cut(s) | 1353 |
| Csp6I | GTAC | 3 cut(s) | 161, 313, 795 |
| CviAII | CATG | 5 cut(s) | 1037, 1054, 1208, 1490, 1507 |
| CviQI | GTAC | 3 cut(s) | 161, 313, 795 |
| DdeI | CTNAG | 6 cut(s) | 25, 150, 675, 783, 1197, 1340 |
| DpnI | GATC | 7 cut(s) | 79, 371, 401, 621, 978, 1031, 1397 |
| DpnII | GATC | 7 cut(s) | 77, 369, 399, 619, 976, 1029, 1395 |
| Eam1104I | CTCTTC | 4 cut(s) | 422, 723, 1248, 1341 |
| EarI | CTCTTC | 4 cut(s) | 422, 723, 1248, 1341 |
| EciI | GGCGGA | 2 cut(s) | 1121, 1339 |
| Eco24I | GRGCYC | 1 cut(s) | 56 |
| Eco31I | GGTCTC | 1 cut(s) | 728 |
| Eco47I | GGWCC | 2 cut(s) | 190, 920 |
| Eco57I | CTGAAG | 2 cut(s) | 354, 1394 |
| Eco81I | CCTNAGG | 1 cut(s) | 150 |
| Eco88I | CYCGRG | 2 cut(s) | 326, 1527 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 941 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1221, 1501 |
| EcoT38I | GRGCYC | 1 cut(s) | 56 |
| FaeI | CATG | 5 cut(s) | 1040, 1057, 1211, 1493, 1510 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1110, 1142 |
| FaqI | GGGAC | 1 cut(s) | 972 |
| FatI | CATG | 5 cut(s) | 1036, 1053, 1207, 1489, 1506 |
| FauNDI | CATATG | 1 cut(s) | 1015 |
| FbaI | TGATCA | 2 cut(s) | 369, 1395 |
| FblI | GTMKAC | 1 cut(s) | 1533 |
| Fnu4HI | GCNGC | 6 cut(s) | 237, 291, 294, 322, 534, 840 |
| FokI | GGATG | 1 cut(s) | 1506 |
| FriOI | GRGCYC | 1 cut(s) | 56 |
| Fsp4HI | GCNGC | 6 cut(s) | 237, 291, 294, 322, 534, 840 |
| FspBI | CTAG | 4 cut(s) | 21, 33, 200, 779 |
| GlaI | GCGC | 2 cut(s) | 147, 320 |
| GluI | GCNGC | 6 cut(s) | 237, 291, 294, 322, 534, 840 |
| GsuI | CTGGAG | 2 cut(s) | 522, 642 |
| HaeIII | GGCC | 4 cut(s) | 1089, 1223, 1413, 1502 |
| HapII | CCGG | 3 cut(s) | 871, 1003, 1321 |
| HhaI | GCGC | 2 cut(s) | 148, 321 |
| Hin1II | CATG | 5 cut(s) | 1040, 1057, 1211, 1493, 1510 |
| Hin6I | GCGC | 2 cut(s) | 146, 319 |
| HinP1I | GCGC | 2 cut(s) | 146, 319 |
| HincII | GTYRAC | 1 cut(s) | 1300 |
| HindII | GTYRAC | 1 cut(s) | 1300 |
| HindIII | AAGCTT | 4 cut(s) | 336, 1066, 1124, 1387 |
| HinfI | GANTC | 7 cut(s) | 37, 484, 574, 652, 999, 1094, 1367 |
| HpaII | CCGG | 3 cut(s) | 871, 1003, 1321 |
| HphI | GGTGA | 4 cut(s) | 785, 1325, 1405, 1439 |
| Hpy166II | GTNNAC | 3 cut(s) | 776, 1300, 1534 |
| Hpy188I | TCNGA | 4 cut(s) | 75, 343, 579, 676 |
| Hpy8I | GTNNAC | 3 cut(s) | 776, 1300, 1534 |
| HpyAV | CCTTC | 6 cut(s) | 181, 199, 463, 706, 949, 1304 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyCH4IV | ACGT | 2 cut(s) | 83, 1048 |
| HpyCH4V | TGCA | 4 cut(s) | 239, 703, 742, 842 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 143, 1419 |
| HpyF3I | CTNAG | 6 cut(s) | 25, 150, 675, 783, 1197, 1340 |
| HpySE526I | ACGT | 2 cut(s) | 83, 1048 |
| Hsp92II | CATG | 5 cut(s) | 1040, 1057, 1211, 1493, 1510 |
| HspAI | GCGC | 2 cut(s) | 146, 319 |
| Ksp22I | TGATCA | 2 cut(s) | 369, 1395 |
| Kzo9I | GATC | 7 cut(s) | 77, 369, 399, 619, 976, 1029, 1395 |
| LguI | GCTCTTC | 2 cut(s) | 723, 1341 |
| LmnI | GCTCC | 5 cut(s) | 222, 259, 456, 541, 589 |
| Lsp1109I | GCAGC | 6 cut(s) | 223, 277, 280, 333, 520, 826 |
| LweI | GCATC | 2 cut(s) | 74, 1528 |
| MaeI | CTAG | 4 cut(s) | 21, 33, 200, 779 |
| MaeII | ACGT | 2 cut(s) | 83, 1048 |
| MaeIII | GTNAC | 3 cut(s) | 10, 1261, 1427 |
| MalI | GATC | 7 cut(s) | 79, 371, 401, 621, 978, 1031, 1397 |
| MboI | GATC | 7 cut(s) | 77, 369, 399, 619, 976, 1029, 1395 |
| MfeI | CAATTG | 1 cut(s) | 972 |
| MhlI | GDGCHC | 1 cut(s) | 56 |
| MluCI | AATT | 7 cut(s) | 59, 265, 926, 972, 1173, 1188, 1274 |
| MluI | ACGCGT | 1 cut(s) | 135 |
| MlyI | GAGTC | 3 cut(s) | 31, 493, 1103 |
| MmeI | TCCRAC | 1 cut(s) | 1165 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1479 |
| MseI | TTAA | 3 cut(s) | 891, 1146, 1497 |
| MspI | CCGG | 3 cut(s) | 871, 1003, 1321 |
| MunI | CAATTG | 1 cut(s) | 972 |
| Mva1269I | GAATGC | 2 cut(s) | 1158, 1255 |
| MvnI | CGCG | 1 cut(s) | 137 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 143, 1419 |
| NdeI | CATATG | 1 cut(s) | 1015 |
| NdeII | GATC | 7 cut(s) | 77, 369, 399, 619, 976, 1029, 1395 |
| NlaIII | CATG | 5 cut(s) | 1040, 1057, 1211, 1493, 1510 |
| NlaIV | GGNNCC | 1 cut(s) | 255 |
| NmuCI | GTSAC | 3 cut(s) | 10, 1261, 1427 |
| NspI | RCATGY | 1 cut(s) | 1040 |
| NspV | TTCGAA | 2 cut(s) | 547, 1483 |
| PaeI | GCATGC | 1 cut(s) | 1040 |
| PaeR7I | CTCGAG | 1 cut(s) | 1527 |
| PagI | TCATGA | 2 cut(s) | 1207, 1506 |
| PciSI | GCTCTTC | 2 cut(s) | 723, 1341 |
| PctI | GAATGC | 2 cut(s) | 1158, 1255 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1479 |
| PfeI | GAWTC | 4 cut(s) | 574, 652, 999, 1367 |
| PkrI | GCNGC | 6 cut(s) | 238, 292, 295, 323, 535, 841 |
| PleI | GAGTC | 3 cut(s) | 31, 492, 1102 |
| PpsI | GAGTC | 3 cut(s) | 31, 492, 1102 |
| PshAI | GACNNNNGTC | 1 cut(s) | 939 |
| PsiI | TTATAA | 1 cut(s) | 1280 |
| Psp1406I | AACGTT | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 1 cut(s) | 255 |
| PspPI | GGNCC | 4 cut(s) | 190, 920, 1221, 1501 |
| PspXI | VCTCGAGB | 1 cut(s) | 1527 |
| PstI | CTGCAG | 1 cut(s) | 744 |
| RsaI | GTAC | 3 cut(s) | 162, 314, 796 |
| RsaNI | GTAC | 3 cut(s) | 161, 313, 795 |
| SapI | GCTCTTC | 2 cut(s) | 723, 1341 |
| SaqAI | TTAA | 3 cut(s) | 891, 1146, 1497 |
| SatI | GCNGC | 6 cut(s) | 237, 291, 294, 322, 534, 840 |
| Sau3AI | GATC | 7 cut(s) | 77, 369, 399, 619, 976, 1029, 1395 |
| Sau96I | GGNCC | 4 cut(s) | 190, 920, 1221, 1501 |
| SchI | GAGTC | 3 cut(s) | 31, 493, 1103 |
| SduI | GDGCHC | 1 cut(s) | 56 |
| SfaNI | GCATC | 2 cut(s) | 74, 1528 |
| SfcI | CTRYAG | 1 cut(s) | 740 |
| Sfr274I | CTCGAG | 1 cut(s) | 1527 |
| SfuI | TTCGAA | 2 cut(s) | 547, 1483 |
| SinI | GGWCC | 2 cut(s) | 190, 920 |
| SlaI | CTCGAG | 1 cut(s) | 1527 |
| SmlI | CTYRAG | 3 cut(s) | 1091, 1514, 1527 |
| SmoI | CTYRAG | 3 cut(s) | 1091, 1514, 1527 |
| SphI | GCATGC | 1 cut(s) | 1040 |
| Sse9I | AATT | 7 cut(s) | 59, 265, 926, 972, 1173, 1188, 1274 |
| SsiI | CCGC | 2 cut(s) | 1106, 1324 |
| SspI | AATATT | 1 cut(s) | 1465 |
| SspMI | CTAG | 4 cut(s) | 21, 33, 200, 779 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaiI | ACGT | 2 cut(s) | 86, 1051 |
| TaqI | TCGA | 6 cut(s) | 211, 547, 835, 1353, 1483, 1528 |
| TaqII | GACCGA | 1 cut(s) | 1249 |
| TasI | AATT | 7 cut(s) | 59, 265, 926, 972, 1173, 1188, 1274 |
| TatI | WGTACW | 1 cut(s) | 312 |
| TfiI | GAWTC | 4 cut(s) | 574, 652, 999, 1367 |
| Tru1I | TTAA | 3 cut(s) | 891, 1146, 1497 |
| Tru9I | TTAA | 3 cut(s) | 891, 1146, 1497 |
| TscAI | CASTG | 1 cut(s) | 409 |
| TseFI | GTSAC | 3 cut(s) | 10, 1261, 1427 |
| TseI | GCWGC | 6 cut(s) | 236, 290, 293, 321, 533, 839 |
| Tsp45I | GTSAC | 3 cut(s) | 10, 1261, 1427 |
| TspDTI | ATGAA | 6 cut(s) | 300, 725, 1224, 1235, 1506, 1523 |
| TspGWI | ACGGA | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 409 |
| VpaK11BI | GGWCC | 2 cut(s) | 190, 920 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 941 |
| XapI | RAATTY | 3 cut(s) | 926, 1188, 1274 |
| XceI | RCATGY | 1 cut(s) | 1040 |
| XhoI | CTCGAG | 1 cut(s) | 1527 |
| XmiI | GTMKAC | 1 cut(s) | 1533 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1479 |
| XspI | CTAG | 4 cut(s) | 21, 33, 200, 779 |