Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016530

Physical Location & Seq

Genomic Coordinates Forward (+)

68255386 .. 68258666

Gene Structure 3281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGTTTCAGAGATCTGGAGTCTGGTCTGCCTCCGCAACGACAAAGACAATCCTCGCTTTTGTTGAAGAAGAATTCTTCGTCCTCAAAGAATTACTATGAGAAGAACAAGGAGGAGGCGGAGGAGGAGCCGTCGCGGGCTGTGGCCGCTGGGATTTTCCAATTGCAAACCGCCGTCTCCTCCTTTTACCGCCTCGTCAATTCCCTCGGCACCCCTAAAGACACCCTTCAACTCCGTGACAACCTGCATAAGACAAGGACACATATTGGGCAGTTGGTGAAAGATATCTCAGCTAAACTTAAGCAAGCTAGTGATACTGATCACCATGCTGAAGTTAGTGTTGTCAAGAAGATTGCTGATGCTAAGCTTGCAAAGAATTTCCAGGCAGCTCTTAAAGACTATCAGAAGGCTCAAAGGCTTGCTGCTGAAAGGGAGACTGCATATGCTCCTTTTGTTCCCAAACAAGTTCTCCCTTCCAGTTATTCTCCCCACGAACAAGAGATGAGTTCAGCTAGAAGTCCCAAGCAGCAATCGCTCCTTCTAGAATCAGAAAGACAAGCAATTTTGCTATCAGACAATGAGATTGCATTCAATGAAGCCATTATTGAGGAAAGGGAGCAAGGGATCCAAGAAATTCAGCAACAAATTAGTGAGGTTAATGAGATTTTCAAAGATCTAGCTGTCCTGGTTCAAGATCAAGGAGCTCTAATAGATGATTTTAGTTCCAATATTGACAACGCTCATTCTGCAACTGCACAAGCTACTTCCCAACTTTCAAAAGCATCCAAGCTCCAAAAATCAAATTCATCCCTGACCTGTTTGCTGCTGGTGATATTTGGAATAGTCCTCATCATTGTCCTTATAGTTGTTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

292

Amino Acids

32.4

Weight (kDa)

6.34

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	46 - 171	1.9e-32	Syntaxin-like protein
SNARE	PF05739	236 - 287	7.9e-15	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16830
fragaria_vesca	FvH4_7g34071
malus_domestica	MD01G1237000.v1.1 MD07G1309600.v1.1
prunus_persica	Prupe.2G327300_v2.0.a1
pyrus_communis	pycom01g24480 pycom07g28160
rosa_chinensis	RchiOBHm_Chr1g0384351
rosa_laevigata	RLG00000026046
rosa_multiflora	Rmu_sc0016737.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276750
rosa_rugosa	Rorug01G0447000
rosa_samantha	Rh1CG443100
rosa_wichuraiana	Rw1G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	209
AccII	CGCG	1 cut(s)	136
AciI	CCGC	6 cut(s)	35, 119, 136, 147, 171, 190
AclWI	GGATC	2 cut(s)	619, 632
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	4 cut(s)	73, 376, 633, 802
AcuI	CTGAAG	1 cut(s)	351
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	6 cut(s)	67, 230, 592, 670, 692, 777
AjnI	CCWGG	2 cut(s)	381, 684
AluBI	AGCT	9 cut(s)	293, 308, 367, 389, 512, 680, 704, 761, 790
AluI	AGCT	9 cut(s)	293, 308, 367, 389, 512, 680, 704, 761, 790
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	2 cut(s)	181, 428
AlwI	GGATC	2 cut(s)	619, 632
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	4 cut(s)	386, 422, 526, 823
ApoI	RAATTY	4 cut(s)	73, 376, 633, 802
AsuHPI	GGTGA	3 cut(s)	289, 314, 841
BamHI	GGATCC	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	706
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	4 cut(s)	398, 409, 538, 810
BceAI	ACGGC	2 cut(s)	115, 158
BciT130I	CCWGG	2 cut(s)	383, 686
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	181, 428
BfaI	CTAG	4 cut(s)	309, 513, 542, 677
BfrI	CTTAAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	252
BglII	AGATCT	2 cut(s)	13, 673
BisI	GCNGC	5 cut(s)	147, 387, 423, 527, 824
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	5 cut(s)	148, 388, 424, 528, 825
Bme1390I	CCNGG	2 cut(s)	383, 686
BmiI	GGNNCC	3 cut(s)	129, 211, 626
BmrFI	CCNGG	2 cut(s)	383, 686
BmsI	GCATC	2 cut(s)	349, 791
BpmI	CTGGAG	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 453, 483
Bse1I	ACTGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	383, 686
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	2 cut(s)	782, 806
BseJI	GATNNNNATC	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	4 cut(s)	128, 137, 140, 169
BseXI	GCAGC	4 cut(s)	398, 409, 538, 810
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	738
Bsh1236I	CGCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	706
BslFI	GGGAC	1 cut(s)	504
BsmAI	GTCTC	2 cut(s)	181, 428
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	504
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp143I	GATC	5 cut(s)	13, 319, 624, 673, 694
Bsp1720I	GCTNAGC	1 cut(s)	363
BspACI	CCGC	6 cut(s)	35, 119, 136, 147, 171, 190
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	129, 211, 626
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	619, 632
BspT107I	GGYRCC	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	5 cut(s)	13, 319, 624, 673, 694
Bst2UI	CCWGG	2 cut(s)	383, 686
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	4 cut(s)	138, 306, 369, 420
BstDEI	CTNAG	2 cut(s)	289, 363
BstF5I	GGATG	2 cut(s)	782, 806
BstFNI	CGCG	1 cut(s)	136
BstKTI	GATC	5 cut(s)	16, 322, 627, 676, 697
BstMAI	GTCTC	2 cut(s)	181, 428
BstMBI	GATC	5 cut(s)	13, 319, 624, 673, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 368, 532, 746
BstNI	CCWGG	2 cut(s)	383, 686
BstSCI	CCNGG	2 cut(s)	381, 684
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	4 cut(s)	398, 409, 538, 810
BstX2I	RGATCY	3 cut(s)	13, 624, 673
BstYI	RGATCY	3 cut(s)	13, 624, 673
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	782, 806
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	138, 306, 369, 420
CviAII	CATG	1 cut(s)	326
DdeI	CTNAG	2 cut(s)	289, 363
DpnI	GATC	5 cut(s)	15, 321, 626, 675, 696
DpnII	GATC	5 cut(s)	13, 319, 624, 673, 694
EaeI	YGGCCR	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	706
Eco32I	GATATC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	704
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	381, 684
EcoRV	GATATC	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	706
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	1 cut(s)	329
FaiI	YATR	7 cut(s)	99, 249, 264, 327, 442, 444, 863
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	1 cut(s)	325
FauI	CCCGC	1 cut(s)	129
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	5 cut(s)	147, 387, 423, 527, 824
FokI	GGATG	2 cut(s)	769, 793
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	5 cut(s)	147, 387, 423, 527, 824
FspBI	CTAG	4 cut(s)	309, 513, 542, 677
GluI	GCNGC	5 cut(s)	147, 387, 423, 527, 824
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	2 cut(s)	20, 545
HphI	GGTGA	3 cut(s)	289, 314, 841
Hpy188I	TCNGA	4 cut(s)	11, 405, 550, 574
Hpy188III	TCNNGA	4 cut(s)	17, 346, 542, 692
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	4 cut(s)	236, 400, 483, 548
HpyCH4V	TGCA	7 cut(s)	166, 247, 371, 440, 587, 749, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 368, 532, 746
HpyF3I	CTNAG	2 cut(s)	289, 363
Hsp92II	CATG	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	13, 319, 624, 673, 694
LmnI	GCTCC	6 cut(s)	127, 451, 540, 616, 701, 795
Lsp1109I	GCAGC	4 cut(s)	398, 409, 538, 810
LweI	GCATC	2 cut(s)	349, 791
MaeI	CTAG	4 cut(s)	309, 513, 542, 677
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	5 cut(s)	15, 321, 626, 675, 696
MboI	GATC	5 cut(s)	13, 319, 624, 673, 694
MboII	GAAGA	5 cut(s)	69, 79, 82, 115, 361
MfeI	CAATTG	1 cut(s)	161
MflI	RGATCY	3 cut(s)	13, 624, 673
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	9 cut(s)	73, 91, 161, 199, 376, 561, 633, 645, 802
MlyI	GAGTC	1 cut(s)	29
MseI	TTAA	3 cut(s)	300, 393, 657
MspA1I	CMGCKG	1 cut(s)	149
MspCI	CTTAAG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	383, 686
MunI	CAATTG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	2 cut(s)	383, 686
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	4 cut(s)	146, 368, 532, 746
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	5 cut(s)	13, 319, 624, 673, 694
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	3 cut(s)	129, 211, 626
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	5 cut(s)	148, 388, 424, 528, 825
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp124BI	GAGCTC	1 cut(s)	706
Psp6I	CCWGG	2 cut(s)	381, 684
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	381, 684
PspN4I	GGNNCC	3 cut(s)	129, 211, 626
PsuI	RGATCY	3 cut(s)	13, 624, 673
SacI	GAGCTC	1 cut(s)	706
SaqAI	TTAA	3 cut(s)	300, 393, 657
SatI	GCNGC	5 cut(s)	147, 387, 423, 527, 824
Sau3AI	GATC	5 cut(s)	13, 319, 624, 673, 694
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	383, 686
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	2 cut(s)	349, 791
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	9 cut(s)	73, 91, 161, 199, 376, 561, 633, 645, 802
SsiI	CCGC	6 cut(s)	35, 119, 136, 147, 171, 190
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	4 cut(s)	309, 513, 542, 677
SstI	GAGCTC	1 cut(s)	706
StyD4I	CCNGG	2 cut(s)	381, 684
TasI	AATT	9 cut(s)	73, 91, 161, 199, 376, 561, 633, 645, 802
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	3 cut(s)	300, 393, 657
Tru9I	TTAA	3 cut(s)	300, 393, 657
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	4 cut(s)	386, 422, 526, 823
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	609, 795
TspGWI	ACGGA	1 cut(s)	224
Vha464I	CTTAAG	1 cut(s)	299
XapI	RAATTY	4 cut(s)	73, 376, 633, 802
XbaI	TCTAGA	1 cut(s)	541
XspI	CTAG	4 cut(s)	309, 513, 542, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.