Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013559

Physical Location & Seq

Genomic Coordinates Forward (+)

68408235 .. 68412641

Gene Structure 4407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGATGGCCACAGCTGCTGCTGCTGCTGCTGTTGGGCTTAGTAGTACGGGGAAGAGGCTCTTTAGTTCTTCCTTGTATTATTCAGATATCACAGATAAGCTCTTTTATCTCAATGATCACGGCTTTGTAAATTGTCAATTGTCTTCAACAAAGAATGTTGTCACTGCCAGAAAGTCGTCTTCCAATTACAGTAATTCCAGATTTCCATCTTCAAATAGACATCAAGATCAGTCCATCAGGGCTTTAAAAGAGCATGCAGATACCGCATCTGCTCCTTCATCAACCACACATCAATTGCTAGAACATTACAACGACTTGGAGGAGGAAAGCTACGATCTTGAATATTCAGTGGAGGCGCTTCTTCTGCTACAGAAGTCTATGCTGGAAAAGCAGTGGAATCTTTCCTTTGAGAAAAAACTGTCAAGAAGAAAAATAACTGATAAGAAGATACCTGTCACTTGTTCTGGGGTATCTGCTCGGCAGAGGAGGATGAGTACTAGGAGGAAAACTTTCAGCAAAAATACCTTAGAAATGCAACCCAGCATCAACAAGCATCTCAGTCCGAGGCTGCTGCAGAATCGTATAAAGGGTTATGTGAAGGGCGTTACGAGTGAGCATTTGCTGACTCACACTGAGGTCGTACGCCTGTCAAAGAAAATTAAGATCGGGCTTTCAGTGGAGGAGCATAAATCAAGACTGAAGGAGAAACTGGGTTGTGAGCCCTCTGACGAACAACTCGCAACTTCATTGAGGATTTCCAGCACTGAACTACATTCAAAGTTAATCCAATGTTCTTTGGCAAGAGAGAAGCTGACAATGAGCAATGTTCGTCTGGTCATGTCCATTGCCCAAAGATATGATAACATGGGTGCTGAAATGGCTGACCTTGTCCAGGGTGGCTTAATTGGACTACTACGCGGGATTGAGAAATTTGATTCATCAAAGGGGTTCAAAATTTCTACTTATGTTTACTGGTGGATACGTCAGGGTGTTTCAAGAGCACTGGTTGAAAATTCAAGAACCTTAAGACTACCTACACATTTGCATGAGAGGTTAGGGTTAATCAGAAATGCAAAAGTTAGATTGGAAGAGAAAGGAATAACTCCATCTATTGATAGGATTGCAGAAAGCCTGAATATGTCCAAAAAGAAAGTTAGGAATGCTACTGAGGCAATCAGTAAGGTTTTTTCGCTTGATAGAGATGCATTCCCCACTTTGAATGGCCTTCCAGGAGAAACTCATCATAGTTACATTGCTGATAATCGCCATGAGAACATCCCATGGCATGGGGTGGATGAGTTGGCACTCAAGGATGAAGTAAACAAGCTCATAAATATGATGCTTGTGGAGCGTGAGCGAGAGATCATTCGGCTTTACTATGGTCTGGATAATGAATGTCTTACATGGGAGGACATTAGTAAACGTATAGGATTGTCCAGAGAAAGAGTTAGGCAAGTCGGACTGGTTGCTCTAGAGAAACTGAAACATGGTGCGAGGAAAAAAGACATGGAGGCCATGCTAGTCCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009987 GO:0010109 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051716 GO:0051775 GO:0060255 GO:0065007 GO:0071214 GO:0071461 GO:0071478 GO:0071482 GO:0071704 GO:0080005 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

510

Amino Acids

58.09

Weight (kDa)

9.61

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r2	PF04542	273 - 340	2.8e-17	Sigma-70 region 2
Sigma70_r3	PF04539	350 - 421	2.9e-13	Sigma-70 region 3
Sigma70_r4	PF04545	448 - 496	3.9e-10	Sigma-70, region 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64860 AT1G64860
fragaria_vesca	FvH4_7g34280
malus_domestica	MD01G1240100.v1.1 MD07G1311500.v1.1
prunus_persica	Prupe.2G329700_v2.0.a1 Prupe.2G329700_v2.0.a1
pyrus_communis	pycom01g24680 pycom07g28370
rosa_chinensis	RchiOBHm_Chr1g0384631
rosa_laevigata	RLG00000026025
rosa_multiflora	Rmu_sc0012136.1_g000027
rosa_roxburghii	Rroxscaffold_4G00276510
rosa_samantha	Rh1AG474800 Rh1BG432900 Rh1CG446100 Rh1DG465500
rosa_wichuraiana	Rw1G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1286
AccII	CGCG	1 cut(s)	918
AciI	CCGC	2 cut(s)	264, 918
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	929, 954, 1012
AcuI	CTGAAG	1 cut(s)	719
AfaI	GTAC	3 cut(s)	46, 496, 642
AfiI	CCNNNNNNNGG	2 cut(s)	892, 1286
AflII	CTTAAG	1 cut(s)	1024
AgsI	TTSAA	9 cut(s)	147, 213, 341, 777, 952, 996, 1010, 1017, 1219
AjnI	CCWGG	2 cut(s)	891, 1228
AluBI	AGCT	5 cut(s)	14, 100, 330, 811, 1327
AluI	AGCT	5 cut(s)	14, 100, 330, 811, 1327
Alw21I	GWGCWC	1 cut(s)	1003
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	3 cut(s)	6, 1222, 1512
ApeKI	GCWGC	7 cut(s)	14, 17, 20, 23, 26, 568, 571
ApoI	RAATTY	3 cut(s)	929, 954, 1012
Asp700I	GAANNNNTTC	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	723
BbsI	GAAGAC	2 cut(s)	135, 171
Bbv12I	GWGCWC	1 cut(s)	1003
BbvI	GCAGC	6 cut(s)	4, 7, 10, 13, 555, 558
BccI	CCATC	3 cut(s)	214, 242, 1114
BceAI	ACGGC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	553, 587
BciT130I	CCWGG	2 cut(s)	893, 1230
BciVI	GTATCC	1 cut(s)	972
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	4 cut(s)	299, 498, 1472, 1520
BfmI	CTRYAG	2 cut(s)	368, 572
BfoI	RGCGCY	1 cut(s)	359
BfrI	CTTAAG	1 cut(s)	1024
BfuI	GTATCC	1 cut(s)	972
BisI	GCNGC	7 cut(s)	15, 18, 21, 24, 27, 569, 572
BlsI	GCNGC	7 cut(s)	16, 19, 22, 25, 28, 570, 573
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	893, 1230
BmrFI	CCNGG	2 cut(s)	893, 1230
BmrI	ACTGGG	1 cut(s)	719
BmsI	GCATC	5 cut(s)	275, 552, 562, 1192, 1329
BmuI	ACTGGG	1 cut(s)	719
BpiI	GAAGAC	2 cut(s)	135, 171
BpuEI	CTTGAG	1 cut(s)	1292
BsaBI	GATNNNNATC	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	563, 892, 1280
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	892, 1286
Bse1I	ACTGG	4 cut(s)	714, 977, 1008, 1467
Bse3DI	GCAATG	3 cut(s)	829, 843, 1251
Bse8I	GATNNNNATC	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	893, 1230
BseDI	CCNNGG	3 cut(s)	563, 892, 1280
BseGI	GGATG	4 cut(s)	495, 1275, 1300, 1318
BseJI	GATNNNNATC	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	892, 1286
BseMI	GCAATG	3 cut(s)	829, 843, 1251
BseMII	CTCAG	3 cut(s)	571, 624, 1158
BseNI	ACTGG	4 cut(s)	714, 977, 1008, 1467
BseRI	GAGGAG	3 cut(s)	335, 499, 695
BseXI	GCAGC	6 cut(s)	4, 7, 10, 13, 555, 558
BseYI	CCCAGC	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	918
BshFI	GGCC	3 cut(s)	8, 1224, 1514
BsiHKAI	GWGCWC	1 cut(s)	1003
BsiWI	CGTACG	1 cut(s)	640
BslI	CCNNNNNNNGG	2 cut(s)	892, 1286
BsmI	GAATGC	2 cut(s)	1165, 1205
BsnI	GGCC	3 cut(s)	8, 1224, 1514
Bsp1286I	GDGCHC	2 cut(s)	723, 1003
Bsp143I	GATC	5 cut(s)	115, 226, 334, 663, 1362
Bsp19I	CCATGG	1 cut(s)	1280
BspACI	CCGC	2 cut(s)	264, 918
BspANI	GGCC	3 cut(s)	8, 1224, 1514
BspCNI	CTCAG	3 cut(s)	570, 625, 1159
BspFNI	CGCG	1 cut(s)	918
BspMAI	CTGCAG	1 cut(s)	576
BspTI	CTTAAG	1 cut(s)	1024
BsrDI	GCAATG	3 cut(s)	829, 843, 1251
BsrI	ACTGG	4 cut(s)	714, 977, 1008, 1467
BssECI	CCNNGG	3 cut(s)	563, 892, 1280
BssMI	GATC	5 cut(s)	115, 226, 334, 663, 1362
BssT1I	CCWWGG	1 cut(s)	1280
Bst2UI	CCWGG	2 cut(s)	893, 1230
Bst4CI	ACNGT	2 cut(s)	191, 420
Bst6I	CTCTTC	2 cut(s)	47, 1083
BstAFI	CTTAAG	1 cut(s)	1024
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	5 cut(s)	38, 526, 557, 633, 1167
BstDSI	CCRYGG	1 cut(s)	1280
BstENI	CCTNNNNNAGG	1 cut(s)	890
BstF5I	GGATG	4 cut(s)	495, 1275, 1300, 1318
BstFNI	CGCG	1 cut(s)	918
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	5 cut(s)	118, 229, 337, 666, 1365
BstMBI	GATC	5 cut(s)	115, 226, 334, 663, 1362
BstNI	CCWGG	2 cut(s)	893, 1230
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	891, 1228
BstSFI	CTRYAG	2 cut(s)	368, 572
BstUI	CGCG	1 cut(s)	918
BstV1I	GCAGC	6 cut(s)	4, 7, 10, 13, 555, 558
BstV2I	GAAGAC	2 cut(s)	135, 171
BsuI	GTATCC	1 cut(s)	972
BsuRI	GGCC	3 cut(s)	8, 1224, 1514
BtgI	CCRYGG	1 cut(s)	1280
BtsCI	GGATG	4 cut(s)	495, 1275, 1300, 1318
BtsI	GCAGTG	2 cut(s)	162, 398
BtsIMutI	CAGTG	7 cut(s)	162, 354, 398, 630, 681, 762, 1001
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	45, 495, 641
CviQI	GTAC	3 cut(s)	45, 495, 641
DdeI	CTNAG	5 cut(s)	38, 526, 557, 633, 1167
DpnI	GATC	5 cut(s)	117, 228, 336, 665, 1364
DpnII	GATC	5 cut(s)	115, 226, 334, 663, 1362
DraI	TTTAAA	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	47, 1083
EarI	CTCTTC	2 cut(s)	47, 1083
Eco130I	CCWWGG	1 cut(s)	1280
Eco24I	GRGCYC	1 cut(s)	723
Eco32I	GATATC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	719
EcoNI	CCTNNNNNAGG	1 cut(s)	890
EcoRII	CCWGG	2 cut(s)	891, 1228
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	1280
EcoT22I	ATGCAT	1 cut(s)	1207
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	1280
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FauI	CCCGC	1 cut(s)	911
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	7 cut(s)	15, 18, 21, 24, 27, 569, 572
FokI	GGATG	4 cut(s)	502, 1262, 1307, 1325
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	7 cut(s)	15, 18, 21, 24, 27, 569, 572
FspBI	CTAG	4 cut(s)	299, 498, 1472, 1520
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	7 cut(s)	15, 18, 21, 24, 27, 569, 572
GsaI	CCCAGC	1 cut(s)	543
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	3 cut(s)	8, 1224, 1514
HhaI	GCGC	1 cut(s)	358
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	4 cut(s)	397, 577, 625, 935
Hpy166II	GTNNAC	3 cut(s)	970, 1321, 1421
Hpy188I	TCNGA	5 cut(s)	85, 564, 727, 1067, 1460
Hpy8I	GTNNAC	3 cut(s)	970, 1321, 1421
HpyAV	CCTTC	4 cut(s)	285, 592, 694, 1235
HpyCH4III	ACNGT	2 cut(s)	191, 420
HpyCH4IV	ACGT	2 cut(s)	982, 1423
HpyCH4V	TGCA	7 cut(s)	257, 535, 574, 1045, 1073, 1124, 1205
HpyF3I	CTNAG	5 cut(s)	38, 526, 557, 633, 1167
HpySE526I	ACGT	2 cut(s)	982, 1423
HspAI	GCGC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	5 cut(s)	115, 226, 334, 663, 1362
LmnI	GCTCC	3 cut(s)	277, 682, 1348
Lsp1109I	GCAGC	6 cut(s)	4, 7, 10, 13, 555, 558
LweI	GCATC	5 cut(s)	275, 552, 562, 1192, 1329
MaeI	CTAG	4 cut(s)	299, 498, 1472, 1520
MaeII	ACGT	2 cut(s)	982, 1423
MaeIII	GTNAC	4 cut(s)	160, 454, 604, 1247
MalI	GATC	5 cut(s)	117, 228, 336, 665, 1364
MboI	GATC	5 cut(s)	115, 226, 334, 663, 1362
MboII	GAAGA	9 cut(s)	60, 64, 135, 171, 201, 353, 438, 457, 1100
MfeI	CAATTG	2 cut(s)	137, 293
MhlI	GDGCHC	2 cut(s)	723, 1003
MlsI	TGGCCA	1 cut(s)	8
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	1438
Mox20I	TGGCCA	1 cut(s)	8
Mph1103I	ATGCAT	1 cut(s)	1207
MroXI	GAANNNNTTC	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	7 cut(s)	245, 660, 782, 902, 1025, 1061, 1531
MslI	CAYNNNNRTG	2 cut(s)	1044, 1334
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	14
MspCI	CTTAAG	1 cut(s)	1024
MspR9I	CCNGG	2 cut(s)	893, 1230
MunI	CAATTG	2 cut(s)	137, 293
Mva1269I	GAATGC	2 cut(s)	1165, 1205
MvaI	CCWGG	2 cut(s)	893, 1230
MvnI	CGCG	1 cut(s)	918
NcoI	CCATGG	1 cut(s)	1280
NdeII	GATC	5 cut(s)	115, 226, 334, 663, 1362
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	2 cut(s)	160, 454
NsiI	ATGCAT	1 cut(s)	1207
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PctI	GAATGC	2 cut(s)	1165, 1205
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	397, 577, 935
Pfl23II	CGTACG	1 cut(s)	640
PflFI	GACNNNGTC	1 cut(s)	887
PflMI	CCANNNNNTGG	1 cut(s)	1286
PfoI	TCCNGGA	1 cut(s)	1228
PkrI	GCNGC	7 cut(s)	16, 19, 22, 25, 28, 570, 573
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Psp6I	CCWGG	2 cut(s)	891, 1228
PspFI	CCCAGC	1 cut(s)	539
PspGI	CCWGG	2 cut(s)	891, 1228
PspLI	CGTACG	1 cut(s)	640
PstI	CTGCAG	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	17
PsyI	GACNNNGTC	1 cut(s)	887
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	46, 496, 642
RsaNI	GTAC	3 cut(s)	45, 495, 641
RseI	CAYNNNNRTG	2 cut(s)	1044, 1334
SaqAI	TTAA	7 cut(s)	245, 660, 782, 902, 1025, 1061, 1531
SatI	GCNGC	7 cut(s)	15, 18, 21, 24, 27, 569, 572
Sau3AI	GATC	5 cut(s)	115, 226, 334, 663, 1362
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	2 cut(s)	893, 1230
SduI	GDGCHC	2 cut(s)	723, 1003
SfaNI	GCATC	5 cut(s)	275, 552, 562, 1192, 1329
SfcI	CTRYAG	2 cut(s)	368, 572
SmiMI	CAYNNNNRTG	2 cut(s)	1044, 1334
SmlI	CTYRAG	2 cut(s)	1024, 1307
SmoI	CTYRAG	2 cut(s)	1024, 1307
SphI	GCATGC	1 cut(s)	257
SsiI	CCGC	2 cut(s)	264, 918
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	4 cut(s)	299, 498, 1472, 1520
StyD4I	CCNGG	2 cut(s)	891, 1228
StyI	CCWWGG	1 cut(s)	1280
TaaI	ACNGT	2 cut(s)	191, 420
TaiI	ACGT	2 cut(s)	985, 1426
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	3 cut(s)	397, 577, 935
Tru1I	TTAA	7 cut(s)	245, 660, 782, 902, 1025, 1061, 1531
Tru9I	TTAA	7 cut(s)	245, 660, 782, 902, 1025, 1061, 1531
TscAI	CASTG	7 cut(s)	169, 354, 398, 637, 681, 769, 1008
TseFI	GTSAC	2 cut(s)	160, 454
TseI	GCWGC	7 cut(s)	14, 17, 20, 23, 26, 568, 571
Tsp45I	GTSAC	2 cut(s)	160, 454
TspDTI	ATGAA	5 cut(s)	267, 735, 927, 1329, 1407
TspRI	CASTG	7 cut(s)	169, 354, 398, 637, 681, 769, 1008
Tth111I	GACNNNGTC	1 cut(s)	887
Van91I	CCANNNNNTGG	1 cut(s)	1286
Vha464I	CTTAAG	1 cut(s)	1024
XagI	CCTNNNNNAGG	1 cut(s)	890
XapI	RAATTY	3 cut(s)	929, 954, 1012
XbaI	TCTAGA	1 cut(s)	1471
XceI	RCATGY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	4 cut(s)	299, 498, 1472, 1520
ZrmI	AGTACT	1 cut(s)	496
Zsp2I	ATGCAT	1 cut(s)	1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.