Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017414

Physical Location & Seq

Genomic Coordinates Forward (+)

8885882 .. 8890863

Gene Structure 4982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGTTTAGATTTGATAATGGAAGAATTAGAGAGAGATATATAACTAATGCATACACCCTTATCAGTGAAGTTGATCCCATAGTAGCATCCTTCTCTGGAGGAGCAATTGGAGTGATCTTAGCACTGACGGTGGTTGAGAAGTATGGAGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0065007 GO:0065008 GO:0080090 GO:1904143

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

51

Amino Acids

5.61

Weight (kDa)

6.04

Isoelectric Point (pI)

5.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017414)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321291 RchiOBHm_Chr3g0494611 RchiOBHm_Chr4g0431431 RchiOBHm_Chr5g0059101 RchiOBHm_Chr6g0255891
rosa_laevigata	RLG00000029940
rosa_roxburghii	Rroxscaffold_160G00433930
rosa_rugosa	Rorug04G0165200 Rorug04G0165300
rosa_samantha	Rh1DG161900 Rh5CG421100 Rh7DG385200
rosa_wichuraiana	Rw6G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	68
BmsI	GCATC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	73, 114
BspPI	GGATC	1 cut(s)	68
BssMI	GATC	2 cut(s)	73, 114
Bst4CI	ACNGT	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	76, 117
BstMBI	GATC	2 cut(s)	73, 114
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	70, 122
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	75, 116
DpnII	GATC	2 cut(s)	73, 114
EcoT22I	ATGCAT	1 cut(s)	52
FaiI	YATR	5 cut(s)	39, 41, 52, 80, 144
FokI	GGATG	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	73, 114
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	1 cut(s)	81
LweI	GCATC	1 cut(s)	95
MalI	GATC	2 cut(s)	75, 116
MboI	GATC	2 cut(s)	73, 114
MboII	GAAGA	1 cut(s)	33
MfeI	CAATTG	1 cut(s)	105
MluCI	AATT	2 cut(s)	24, 105
MnlI	CCTC	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	52
MunI	CAATTG	1 cut(s)	105
NdeII	GATC	2 cut(s)	73, 114
NsiI	ATGCAT	1 cut(s)	52
Sau3AI	GATC	2 cut(s)	73, 114
SfaNI	GCATC	1 cut(s)	95
SgeI	CNNG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	24, 105
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	2 cut(s)	24, 105
TscAI	CASTG	2 cut(s)	70, 129
TspRI	CASTG	2 cut(s)	70, 129
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.