Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0017414

Physical Location & Seq

Genomic Coordinates Reverse (-)

28901986 .. 28903002

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0165200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAGGAAGAGATGGTGCAAGAGGTTTCCTTGCAAACACAAGATCTATGGACGAAGCTATGGTCAACCAATGTTCCAGGTACAGCTAAAATTTTTCTATGGAAGGTGTTGAACAATTGTTTACCTACTATAGTTAGATTGTTAGAGAAACAGGTTCCTTTGGAGATTCGGCCTTGTGTTCTTTGTGGAGTGGGGGATGAGACAATTGAACATCTTTGTAGGCTATGTCCGTTTGTGAAGGGAGTGTTGGAGGCCGTGCCTGGGATAGAACACATTGCCTATTCTTCTAGTGCTAGGCAGTTGCAGTTTATGGAGTGGTTTTGGAGTTGTGCGTCTAACTTGCCTCCTAATTTATGGACAGCTTTTGTTTATAATTTGTGGGGTATTTGGAAGGAGAGAAATAATAGGGTGTGGGATAAGAAGAACATGGATGTGAACCAAGTGGTTTTGCTTTTGTCGCCTCGTCTCCAGGAGTACCAGAGACACCATGGTAAGGGCCAGGGTGGAGGAAGTCGGCGCGTAATTCCTTGGAAACCTCCAAGTGCAGGGTGGGTGAAGATTAATGTTGATGGTGCCTTCTACAAAGAAACATGTACTGGGGGGATTGGAGTCATTATTCGTGATGATATGGGGAGATGTTTAGGTGGTTATTATGCCTCAGTATCTCATGTTTCCTCTTCAGAACAGGTAGAAGCATTGGCAGGGAGGGAGGCAGTCTCACTTGCTATCCAGCGTGGCCTCTCTCCAGTTATTTTTGAGACCGATTCTCTTACTCTTTTTCATGCTACTAAGCAGAGAGTCATTCCCCATACTTCCTTCATTGGTCGTGTGTATGATGACATTACCTTTCATCTGCAGCAGATGTCGGGTTCTTATTTTACTCATGCTTATCGTCAAGCCAATGTTGTGGCTCACACTTTAGCTCGTTTTGCTTGTTCTTCTTCTAGTTCTTTATTTTGGGGCCTAGAGCCTCCAGCTTGTATTGTTGATGTACTATCCAAGGAGTTTACCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

338

Amino Acids

38.08

Weight (kDa)

7.59

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	12 - 81	2e-12	zinc-binding in reverse transcriptase
RVT_3	PF13456	188 - 311	1.2e-24	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017414)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321291 RchiOBHm_Chr3g0494611 RchiOBHm_Chr4g0431431 RchiOBHm_Chr5g0059101 RchiOBHm_Chr6g0255891
rosa_laevigata	RLG00000029940
rosa_roxburghii	Rroxscaffold_160G00433930
rosa_rugosa	Rorug04G0165200 Rorug04G0165300
rosa_samantha	Rh1DG161900 Rh5CG421100 Rh7DG385200
rosa_wichuraiana	Rw6G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	572
AccII	CGCG	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	4 cut(s)	82, 476, 595, 993
AfiI	CCNNNNNNNGG	3 cut(s)	261, 493, 545
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	112, 209
AjnI	CCWGG	4 cut(s)	76, 259, 468, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	5 cut(s)	58, 86, 362, 923, 977
AluI	AGCT	5 cut(s)	58, 86, 362, 923, 977
Alw26I	GTCTC	5 cut(s)	194, 470, 475, 721, 752
AoxI	GGCC	5 cut(s)	170, 252, 496, 736, 961
ApeKI	GCWGC	1 cut(s)	856
ApoI	RAATTY	1 cut(s)	90
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AseI	ATTAAT	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	496, 961
AsuHPI	GGTGA	1 cut(s)	565
BanI	GGYRCC	1 cut(s)	572
BbvI	GCAGC	1 cut(s)	868
BccI	CCATC	2 cut(s)	7, 563
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	4 cut(s)	78, 261, 470, 500
BcoDI	GTCTC	5 cut(s)	194, 470, 475, 721, 752
BfaI	CTAG	4 cut(s)	288, 294, 945, 965
BfmI	CTRYAG	2 cut(s)	129, 854
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	1 cut(s)	857
BlsI	GCNGC	1 cut(s)	858
Bme1390I	CCNGG	4 cut(s)	78, 261, 470, 500
BmgT120I	GGNCC	2 cut(s)	496, 961
BmiI	GGNNCC	3 cut(s)	156, 574, 962
BmrFI	CCNGG	4 cut(s)	78, 261, 470, 500
BmrI	ACTGGG	1 cut(s)	606
BmuI	ACTGGG	1 cut(s)	606
BplI	GAGNNNNNCTC	3 cut(s)	701, 733, 995
BpmI	CTGGAG	3 cut(s)	452, 729, 957
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	5 cut(s)	260, 487, 499, 527, 999
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 493, 545
Bse1I	ACTGG	2 cut(s)	601, 746
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	4 cut(s)	78, 261, 470, 500
BseDI	CCNNGG	5 cut(s)	260, 487, 499, 527, 999
BseGI	GGATG	2 cut(s)	202, 436
BseLI	CCNNNNNNNGG	3 cut(s)	261, 493, 545
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	2 cut(s)	601, 746
BseXI	GCAGC	1 cut(s)	868
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	5 cut(s)	172, 254, 498, 738, 963
BshNI	GGYRCC	1 cut(s)	572
BslI	CCNNNNNNNGG	3 cut(s)	261, 493, 545
BsmAI	GTCTC	5 cut(s)	194, 470, 475, 721, 752
BsmBI	CGTCTC	1 cut(s)	470
BsnI	GGCC	5 cut(s)	172, 254, 498, 738, 963
Bso31I	GGTCTC	1 cut(s)	752
Bsp143I	GATC	1 cut(s)	43
Bsp19I	CCATGG	1 cut(s)	487
BspANI	GGCC	5 cut(s)	172, 254, 498, 738, 963
BspCNI	CTCAG	1 cut(s)	671
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	156, 574, 962
BspMAI	CTGCAG	1 cut(s)	858
BspT107I	GGYRCC	1 cut(s)	572
BspTNI	GGTCTC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	601, 746
BssECI	CCNNGG	5 cut(s)	260, 487, 499, 527, 999
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	3 cut(s)	487, 527, 999
Bst2UI	CCWGG	4 cut(s)	78, 261, 470, 500
Bst6I	CTCTTC	2 cut(s)	3, 682
BstDEI	CTNAG	2 cut(s)	658, 789
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	2 cut(s)	202, 436
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	5 cut(s)	194, 470, 475, 721, 752
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 929
BstNI	CCWGG	4 cut(s)	78, 261, 470, 500
BstNSI	RCATGY	1 cut(s)	594
BstSCI	CCNGG	4 cut(s)	76, 259, 468, 498
BstSFI	CTRYAG	2 cut(s)	129, 854
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	868
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	5 cut(s)	172, 254, 498, 738, 963
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	202, 436
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	496, 961
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	4 cut(s)	81, 475, 594, 992
CviAII	CATG	6 cut(s)	427, 488, 591, 668, 782, 884
CviQI	GTAC	4 cut(s)	81, 475, 594, 992
DdeI	CTNAG	2 cut(s)	658, 789
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	3, 682
EarI	CTCTTC	2 cut(s)	3, 682
Eco130I	CCWWGG	3 cut(s)	487, 527, 999
Eco31I	GGTCTC	1 cut(s)	752
Eco57I	CTGAAG	1 cut(s)	663
EcoO109I	RGGNCCY	1 cut(s)	961
EcoRII	CCWGG	4 cut(s)	76, 259, 468, 498
EcoT14I	CCWWGG	3 cut(s)	487, 527, 999
ErhI	CCWWGG	3 cut(s)	487, 527, 999
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	6 cut(s)	430, 491, 594, 671, 785, 887
FatI	CATG	6 cut(s)	426, 487, 590, 667, 781, 883
Fnu4HI	GCNGC	1 cut(s)	857
FokI	GGATG	2 cut(s)	209, 443
Fsp4HI	GCNGC	1 cut(s)	857
FspBI	CTAG	4 cut(s)	288, 294, 945, 965
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	1 cut(s)	857
GsuI	CTGGAG	3 cut(s)	452, 729, 957
HaeIII	GGCC	5 cut(s)	172, 254, 498, 738, 963
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	6 cut(s)	430, 491, 594, 671, 785, 887
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	4 cut(s)	166, 609, 764, 798
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	4 cut(s)	66, 122, 436, 1008
Hpy188I	TCNGA	1 cut(s)	682
Hpy188III	TCNNGA	1 cut(s)	620
Hpy8I	GTNNAC	4 cut(s)	66, 122, 436, 1008
HpyAV	CCTTC	5 cut(s)	97, 232, 385, 586, 826
HpyCH4V	TGCA	5 cut(s)	19, 34, 304, 545, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 929
HpyF3I	CTNAG	2 cut(s)	658, 789
Hsp92II	CATG	6 cut(s)	430, 491, 594, 671, 785, 887
HspAI	GCGC	1 cut(s)	517
Kzo9I	GATC	1 cut(s)	43
Lsp1109I	GCAGC	1 cut(s)	868
MaeI	CTAG	4 cut(s)	288, 294, 945, 965
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	7 cut(s)	20, 276, 433, 568, 669, 930, 933
MfeI	CAATTG	2 cut(s)	115, 204
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	6 cut(s)	90, 115, 204, 349, 373, 522
MlyI	GAGTC	2 cut(s)	618, 807
MmeI	TCCRAC	1 cut(s)	228
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	431
MspR9I	CCNGG	4 cut(s)	78, 261, 470, 500
MunI	CAATTG	2 cut(s)	115, 204
MvaI	CCWGG	4 cut(s)	78, 261, 470, 500
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	2 cut(s)	457, 929
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	6 cut(s)	430, 491, 594, 671, 785, 887
NlaIV	GGNNCC	3 cut(s)	156, 574, 962
NspI	RCATGY	1 cut(s)	594
PciI	ACATGT	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	166, 764
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	1 cut(s)	858
PleI	GAGTC	2 cut(s)	617, 806
PpsI	GAGTC	2 cut(s)	617, 806
PscI	ACATGT	1 cut(s)	590
PshBI	ATTAAT	1 cut(s)	561
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	4 cut(s)	76, 259, 468, 498
PspGI	CCWGG	4 cut(s)	76, 259, 468, 498
PspN4I	GGNNCC	3 cut(s)	156, 574, 962
PspPI	GGNCC	2 cut(s)	496, 961
PstI	CTGCAG	1 cut(s)	858
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	4 cut(s)	82, 476, 595, 993
RsaNI	GTAC	4 cut(s)	81, 475, 594, 992
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	1 cut(s)	857
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	2 cut(s)	496, 961
SchI	GAGTC	2 cut(s)	618, 807
ScrFI	CCNGG	4 cut(s)	78, 261, 470, 500
SfcI	CTRYAG	2 cut(s)	129, 854
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	6 cut(s)	90, 115, 204, 349, 373, 522
SspMI	CTAG	4 cut(s)	288, 294, 945, 965
StyD4I	CCNGG	4 cut(s)	76, 259, 468, 498
StyI	CCWWGG	3 cut(s)	487, 527, 999
TaqII	GACCGA	1 cut(s)	776
TasI	AATT	6 cut(s)	90, 115, 204, 349, 373, 522
TatI	WGTACW	2 cut(s)	593, 991
TfiI	GAWTC	2 cut(s)	166, 764
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TseI	GCWGC	1 cut(s)	856
TspDTI	ATGAA	3 cut(s)	770, 808, 839
TspGWI	ACGGA	1 cut(s)	219
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	1 cut(s)	594
XcmI	CCANNNNNNNNNTGG	2 cut(s)	485, 546
XspI	CTAG	4 cut(s)	288, 294, 945, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.