Rorug04G0165300

ABC transporter G family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017414
Physical Location & Seq
Reverse (-)
28912912 .. 28918203
5292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0165300.1

Sequence Viewer

Length: 357 bp
ATGGCCGCAAAGATTCTTGCTAACTTAATTGTGATGGGTTCCGGTATACTGGCGAGGGCCGTAGTTCAGGCATATCGTCAAGCACTTGCAAATGCCTCGAAATCTGGTGTTGCCCAAGAAACGCTACAAAATGCTGCTCGTAAAGCAGGCAAAGTCATGACGGAGCAAGAAGCTAGGCAGATTCTTGGTATCTCAGAGGGAACCACTTGGGAGGAAGTCGTGAAGAGATACGACACGTTATTTGAAAACAATGCCAAGAACGGGAGCTTTTACCTCCAGTCAAAAGTTCACAGGGCCAAGGAATGTTTAGAAGCTGCCTATAAAGATAAAGGTCAAGGTACCCCTACCCCAAGTTGA

Protein Analysis

118

Amino Acids

12.79

Weight (kDa)

9.48

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pam16 PF03656 1 - 109 1.2e-21 Pam16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 1 cut(s) 338
AccI GTMKAC 1 cut(s) 46
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 261
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 3 cut(s) 173, 267, 314
AluI AGCT 3 cut(s) 173, 267, 314
AoxI GGCC 3 cut(s) 3, 57, 294
ApeKI GCWGC 2 cut(s) 134, 314
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
Asp718I GGTACC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 57, 294
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 121, 301
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BfaI CTAG 1 cut(s) 174
BisI GCNGC 3 cut(s) 6, 135, 315
BlsI GCNGC 3 cut(s) 7, 136, 316
BmgT120I GGNCC 2 cut(s) 57, 294
BmiI GGNNCC 3 cut(s) 40, 202, 340
BpmI CTGGAG 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 2 cut(s) 54, 277
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 2 cut(s) 54, 277
BseXI GCAGC 2 cut(s) 121, 301
BshFI GGCC 3 cut(s) 5, 59, 296
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 261
BsnI GGCC 3 cut(s) 5, 59, 296
BspACI CCGC 1 cut(s) 6
BspANI GGCC 3 cut(s) 5, 59, 296
BspCNI CTCAG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 3 cut(s) 40, 202, 340
BspT107I GGYRCC 1 cut(s) 338
BsrI ACTGG 2 cut(s) 54, 277
BssECI CCNNGG 1 cut(s) 297
BssNAI GTATAC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 121, 301
BstZ17I GTATAC 1 cut(s) 47
BsuRI GGCC 3 cut(s) 5, 59, 296
Cac8I GCNNGC 1 cut(s) 148
CciI TCATGA 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 57, 294
Csp6I GTAC 1 cut(s) 339
CviAII CATG 1 cut(s) 157
CviJI RGCY 6 cut(s) 5, 59, 173, 267, 296, 314
CviKI_1 RGCY 6 cut(s) 5, 59, 173, 267, 296, 314
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 160
FaiI YATR 4 cut(s) 47, 73, 158, 321
FatI CATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 6, 135, 315
Fsp4HI GCNGC 3 cut(s) 6, 135, 315
FspBI CTAG 1 cut(s) 174
GluI GCNGC 3 cut(s) 6, 135, 315
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 3 cut(s) 5, 59, 296
HapII CCGG 1 cut(s) 42
Hin1II CATG 1 cut(s) 160
HinfI GANTC 2 cut(s) 13, 181
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 47, 289
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 157, 220
Hpy8I GTNNAC 2 cut(s) 47, 289
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 1 cut(s) 160
KpnI GGTACC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 163, 264
LpnPI CCDG 7 cut(s) 35, 53, 55, 90, 132, 277, 290
Lsp1109I GCAGC 2 cut(s) 121, 301
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 236
MboII GAAGA 1 cut(s) 235
MluCI AATT 1 cut(s) 27
MnlI CCTC 5 cut(s) 48, 106, 190, 205, 284
MseI TTAA 1 cut(s) 26
MspI CCGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 3 cut(s) 40, 202, 340
PagI TCATGA 1 cut(s) 156
PfeI GAWTC 2 cut(s) 13, 181
PkrI GCNGC 3 cut(s) 7, 136, 316
PspN4I GGNNCC 3 cut(s) 40, 202, 340
PspPI GGNCC 2 cut(s) 57, 294
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 3 cut(s) 6, 135, 315
Sau96I GGNCC 2 cut(s) 57, 294
SetI ASST 7 cut(s) 175, 239, 269, 276, 316, 334, 340
Sse9I AATT 1 cut(s) 27
SsiI CCGC 1 cut(s) 6
SspMI CTAG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 297
TaiI ACGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 98
TasI AATT 1 cut(s) 27
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 13, 181
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 2 cut(s) 134, 314
TspGWI ACGGA 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.