Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017414

Physical Location & Seq

Genomic Coordinates Forward (+)

63982135 .. 63986210

Gene Structure 4076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33571

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCAGCATGCCCCGACCAAGTTTGGGAGGTACCATTGCCCAGATCGTGAGAACCCCGCTGAGATTTTAGCTGATCTTATATCTGTTGACTACAGCTCTACTGAAAGTGTCTACTCCTCTCAGAAAAGAAAGATGCTCTTGTTGAATCATTTTCACAACATCATCACTAGTTCTGTATGCAACTCCGATTACATTAAGGGAAATCTCCAAGAACAGCACCGGGTTGAGCAGGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

79

Amino Acids

9.18

Weight (kDa)

5.9

Isoelectric Point (pI)

60.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017414)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321291 RchiOBHm_Chr3g0494611 RchiOBHm_Chr4g0431431 RchiOBHm_Chr5g0059101 RchiOBHm_Chr6g0255891
rosa_laevigata	RLG00000029940
rosa_roxburghii	Rroxscaffold_160G00433930
rosa_rugosa	Rorug04G0165200 Rorug04G0165300
rosa_samantha	Rh1DG161900 Rh5CG421100 Rh7DG385200
rosa_wichuraiana	Rw6G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	145
AhlI	ACTAGT	1 cut(s)	167
AluBI	AGCT	2 cut(s)	71, 96
AluI	AGCT	2 cut(s)	71, 96
ApeKI	GCWGC	1 cut(s)	4
Asp718I	GGTACC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	51, 134
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	43, 73
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	52, 133
BspLI	GGNNCC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	34
BssMI	GATC	2 cut(s)	43, 73
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	60, 120
BstKTI	GATC	2 cut(s)	46, 76
BstMBI	GATC	2 cut(s)	43, 73
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	2 cut(s)	71, 96
CviKI_1	RGCY	2 cut(s)	71, 96
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	60, 120
DpnI	GATC	2 cut(s)	45, 75
DpnII	GATC	2 cut(s)	43, 73
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
FaeI	CATG	1 cut(s)	11
FaiI	YATR	3 cut(s)	9, 80, 178
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	7
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	5
HapII	CCGG	1 cut(s)	220
Hin1II	CATG	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	88, 112
Hpy188I	TCNGA	2 cut(s)	123, 187
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	88, 112
HpyCH4V	TGCA	2 cut(s)	4, 180
HpyF3I	CTNAG	2 cut(s)	60, 120
Hsp92II	CATG	1 cut(s)	11
KpnI	GGTACC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	43, 73
LpnPI	CCDG	3 cut(s)	54, 215, 233
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	168
MalI	GATC	2 cut(s)	45, 75
MboI	GATC	2 cut(s)	43, 73
MnlI	CCTC	2 cut(s)	21, 127
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	221
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	2 cut(s)	43, 73
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	32
NspI	RCATGY	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	43, 73
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	3 cut(s)	32, 73, 98
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	91
SpeI	ACTAGT	1 cut(s)	167
SphI	GCATGC	1 cut(s)	11
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.