Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017414

Physical Location & Seq

Genomic Coordinates Forward (+)

58035916 .. 58037807

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG421100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTTGCATCGCAGCCTACCTTACCTTCTTGCAATTCCTGATTCTGGTTTCCCAAGTAATTTTGTTGCTGATGCTTTCCTTTATGTCCAGGTAATTGCTCCTCTTATGCAGCATGCCCCGACCAAGTTTGGGAGGTTAGATTATGTTAAAAGGTCTACTCGGCTGGACAGGTACCATTGCCCAGATCGTGAGAACCCCGCTGAGATTTTAGCTGATCTTATATCTGTTGACTACAGCTCTACTGAAAGTGTCTACTCCTCTCAGAAAAGAAAGATGCTCTTGTTGAATCATTTTCACAACATCATCACTAGTTCTGTATGCAACTCCGATTACATTAAGGGAAATCTCCAAGAACAGCACCGGGTTGAGCAGGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

126

Amino Acids

14.54

Weight (kDa)

6.28

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017414)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321291 RchiOBHm_Chr3g0494611 RchiOBHm_Chr4g0431431 RchiOBHm_Chr5g0059101 RchiOBHm_Chr6g0255891
rosa_laevigata	RLG00000029940
rosa_roxburghii	Rroxscaffold_160G00433930
rosa_rugosa	Rorug04G0165200 Rorug04G0165300
rosa_samantha	Rh1DG161900 Rh5CG421100 Rh7DG385200
rosa_wichuraiana	Rw6G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	171
AccI	GTMKAC	2 cut(s)	155, 252
AciI	CCGC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	44, 129
AgsI	TTSAA	1 cut(s)	286
AhlI	ACTAGT	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	2 cut(s)	212, 237
AluI	AGCT	2 cut(s)	212, 237
ApeKI	GCWGC	2 cut(s)	12, 109
Asp718I	GGTACC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	24, 121
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	362
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	2 cut(s)	13, 110
BlsI	GCNGC	2 cut(s)	14, 111
Bme1390I	CCNGG	2 cut(s)	89, 362
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	2 cut(s)	89, 362
BmsI	GCATC	3 cut(s)	16, 61, 264
BpuMI	CCSGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 129
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	44, 129
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	192, 275
BseRI	GAGGAG	2 cut(s)	90, 247
BseXI	GCAGC	2 cut(s)	24, 121
BshNI	GGYRCC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	44, 129
Bsp143I	GATC	2 cut(s)	184, 214
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	193, 274
BspLI	GGNNCC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	175
BssMI	GATC	2 cut(s)	184, 214
Bst2UI	CCWGG	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	201, 261
BstKTI	GATC	2 cut(s)	187, 217
BstMBI	GATC	2 cut(s)	184, 214
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	87, 360
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	24, 121
Cac8I	GCNNGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	4 cut(s)	15, 163, 212, 237
CviKI_1	RGCY	4 cut(s)	15, 163, 212, 237
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	201, 261
DpnI	GATC	2 cut(s)	186, 216
DpnII	GATC	2 cut(s)	184, 214
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	116
FaiI	YATR	6 cut(s)	84, 107, 114, 144, 221, 319
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	1 cut(s)	112
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	2 cut(s)	155, 252
Fnu4HI	GCNGC	2 cut(s)	13, 110
Fsp4HI	GCNGC	2 cut(s)	13, 110
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	13, 110
HapII	CCGG	1 cut(s)	361
Hin1II	CATG	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	41, 286
HpaII	CCGG	1 cut(s)	361
Hpy166II	GTNNAC	3 cut(s)	156, 229, 253
Hpy188I	TCNGA	2 cut(s)	264, 328
Hpy188III	TCNNGA	2 cut(s)	38, 188
Hpy8I	GTNNAC	3 cut(s)	156, 229, 253
HpyAV	CCTTC	1 cut(s)	35
HpyCH4V	TGCA	4 cut(s)	7, 32, 109, 321
HpyF3I	CTNAG	2 cut(s)	201, 261
Hsp92II	CATG	1 cut(s)	116
KpnI	GGTACC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	184, 214
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	30, 51, 74, 101, 149, 154, 195, 356, 374
Lsp1109I	GCAGC	2 cut(s)	24, 121
LweI	GCATC	3 cut(s)	16, 61, 264
MaeI	CTAG	1 cut(s)	309
MalI	GATC	2 cut(s)	186, 216
MboI	GATC	2 cut(s)	184, 214
MluCI	AATT	3 cut(s)	33, 58, 93
MnlI	CCTC	3 cut(s)	111, 126, 268
MseI	TTAA	2 cut(s)	147, 336
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	2 cut(s)	89, 362
MvaI	CCWGG	1 cut(s)	89
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	2 cut(s)	184, 214
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	173
NmeAIII	GCCGAG	1 cut(s)	139
NspI	RCATGY	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	41, 286
PkrI	GCNGC	2 cut(s)	14, 111
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	147, 336
SatI	GCNGC	2 cut(s)	13, 110
Sau3AI	GATC	2 cut(s)	184, 214
ScrFI	CCNGG	2 cut(s)	89, 362
SetI	ASST	8 cut(s)	22, 27, 93, 137, 155, 173, 214, 239
SfaNI	GCATC	3 cut(s)	16, 61, 264
SfcI	CTRYAG	1 cut(s)	232
SpeI	ACTAGT	1 cut(s)	308
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	3 cut(s)	33, 58, 93
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	87, 360
TasI	AATT	3 cut(s)	33, 58, 93
TfiI	GAWTC	2 cut(s)	41, 286
Tru1I	TTAA	2 cut(s)	147, 336
Tru9I	TTAA	2 cut(s)	147, 336
TseI	GCWGC	2 cut(s)	12, 109
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	2 cut(s)	155, 252
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.