Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0017414

Physical Location & Seq

Genomic Coordinates Forward (+)

52613950 .. 52615217

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG385200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAAAGCACATGCAGGAGCTTATCCGTTATCTCCAATTTGGACTATGATGAATCTGTTGTAATTGCTCCTCTTATGCAGCATGCCCCGACCAAGTTTGGGAGGTACCATTGCCCAGATCGTGAGAACCCTGCTGAGATTTTAGCTGATCTTATATCTATTGACTACAGCTCTGCTGAAAGTGTCTACTCTCAGAAAAGAAAGATGCTCTTGTTGAATCATTTTCATAACATCATCACTAGTTCTGTATGCAACTCCGATTACATTAAGGGAAATCTCCAAGAACAGCACCGGGTTGAGCAGAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

103

Amino Acids

11.8

Weight (kDa)

6.18

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017414)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321291 RchiOBHm_Chr3g0494611 RchiOBHm_Chr4g0431431 RchiOBHm_Chr5g0059101 RchiOBHm_Chr6g0255891
rosa_laevigata	RLG00000029940
rosa_roxburghii	Rroxscaffold_160G00433930
rosa_rugosa	Rorug04G0165200 Rorug04G0165300
rosa_samantha	Rh1DG161900 Rh5CG421100 Rh7DG385200
rosa_wichuraiana	Rw6G021130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	217
AhlI	ACTAGT	1 cut(s)	239
AluBI	AGCT	3 cut(s)	21, 146, 171
AluI	AGCT	3 cut(s)	21, 146, 171
ApeKI	GCWGC	1 cut(s)	79
Asp718I	GGTACC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	293
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	126, 206
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	118, 148
BspCNI	CTCAG	2 cut(s)	127, 205
BspLI	GGNNCC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	109
BssMI	GATC	2 cut(s)	118, 148
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	135, 192
BstKTI	GATC	2 cut(s)	121, 151
BstMBI	GATC	2 cut(s)	118, 148
BstNSI	RCATGY	2 cut(s)	15, 86
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	12, 83
CviJI	RGCY	3 cut(s)	21, 146, 171
CviKI_1	RGCY	3 cut(s)	21, 146, 171
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	135, 192
DpnI	GATC	2 cut(s)	120, 150
DpnII	GATC	2 cut(s)	118, 148
FaeI	CATG	2 cut(s)	15, 86
FaiI	YATR	7 cut(s)	13, 48, 77, 84, 155, 228, 250
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	2 cut(s)	11, 82
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	80
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	2 cut(s)	15, 86
HinfI	GANTC	2 cut(s)	53, 217
HpaII	CCGG	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	195, 259
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	15, 79, 252
HpyF3I	CTNAG	2 cut(s)	135, 192
Hsp92II	CATG	2 cut(s)	15, 86
KpnI	GGTACC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	118, 148
LmnI	GCTCC	2 cut(s)	18, 73
LpnPI	CCDG	3 cut(s)	129, 144, 305
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	240
MalI	GATC	2 cut(s)	120, 150
MboI	GATC	2 cut(s)	118, 148
MluCI	AATT	2 cut(s)	37, 63
MnlI	CCTC	2 cut(s)	81, 96
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	293
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	2 cut(s)	118, 148
NlaIII	CATG	2 cut(s)	15, 86
NlaIV	GGNNCC	1 cut(s)	107
NspI	RCATGY	2 cut(s)	15, 86
PaeI	GCATGC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	53, 217
PkrI	GCNGC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	118, 148
ScrFI	CCNGG	1 cut(s)	293
SetI	ASST	4 cut(s)	23, 107, 148, 173
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	166
SpeI	ACTAGT	1 cut(s)	239
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	2 cut(s)	37, 63
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	291
TasI	AATT	2 cut(s)	37, 63
TfiI	GAWTC	2 cut(s)	53, 217
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	17, 66, 215
TspGWI	ACGGA	1 cut(s)	16
XceI	RCATGY	2 cut(s)	15, 86
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.