RchiOBHm_Chr1g0328901

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
18376080 .. 18378782
2703 bp
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UTR
Exon/CDS
Intron
PRQ55826

Sequence Viewer

Length: 198 bp
ATGAAGGCTACGTGCTTTAACTTGAGAGGATCAATGTCTACTATAATGAGGCCAGTCGCACTAGCTAGGTTCATGCCCATGAATAGCGTCAGATCTAGATCGTACAGCCGGATCTTCAAGCCGGAAAACTTTGTCTTCGACTTATACGCGCCGAGCACAACTAGGCTAAAGGTCGCTACACCGAAGGGGCTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.38

Weight (kDa)

11.34

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019859)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0328901 RchiOBHm_Chr7g0189221
rosa_laevigata RLG00000015289
rosa_rugosa Rorug05G0196500
rosa_samantha Rh5CG318400 Rh6DG027000 Rh7BG334000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 38
AccII CGCG 1 cut(s) 149
AclWI GGATC 2 cut(s) 37, 119
AfaI GTAC 1 cut(s) 104
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 158
AlwI GGATC 2 cut(s) 37, 119
AoxI GGCC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 158
BfaI CTAG 4 cut(s) 62, 66, 96, 162
BglII AGATCT 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 97
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 2 cut(s) 109, 122
BsnI GGCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 4 cut(s) 29, 92, 98, 111
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 183
BspFNI CGCG 1 cut(s) 149
BspPI GGATC 2 cut(s) 37, 119
BsrI ACTGG 1 cut(s) 53
BssMI GATC 4 cut(s) 29, 92, 98, 111
BstBAI YACGTR 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 4 cut(s) 32, 95, 101, 114
BstMBI GATC 4 cut(s) 29, 92, 98, 111
BstUI CGCG 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 92, 111
BstYI RGATCY 2 cut(s) 92, 111
BsuRI GGCC 1 cut(s) 52
CfoI GCGC 1 cut(s) 151
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 73, 79
CviJI RGCY 7 cut(s) 8, 52, 65, 108, 121, 166, 190
CviKI_1 RGCY 7 cut(s) 8, 52, 65, 108, 121, 166, 190
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 191
DpnI GATC 4 cut(s) 31, 94, 100, 113
DpnII GATC 4 cut(s) 29, 92, 98, 111
FaeI CATG 2 cut(s) 76, 82
FaiI YATR 4 cut(s) 44, 74, 80, 145
FatI CATG 2 cut(s) 72, 78
FblI GTMKAC 1 cut(s) 38
FspBI CTAG 4 cut(s) 62, 66, 96, 162
GlaI GCGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 52
HapII CCGG 2 cut(s) 109, 122
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 151
Hin1II CATG 2 cut(s) 76, 82
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HpaII CCGG 2 cut(s) 109, 122
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 2 cut(s) 76, 82
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 4 cut(s) 29, 92, 98, 111
LpnPI CCDG 3 cut(s) 66, 122, 135
MaeI CTAG 4 cut(s) 62, 66, 96, 162
MaeII ACGT 1 cut(s) 11
MalI GATC 4 cut(s) 31, 94, 100, 113
MboI GATC 4 cut(s) 29, 92, 98, 111
MboII GAAGA 2 cut(s) 106, 127
MflI RGATCY 2 cut(s) 92, 111
MhlI GDGCHC 1 cut(s) 158
MnlI CCTC 2 cut(s) 20, 42
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 2 cut(s) 109, 122
MvnI CGCG 1 cut(s) 149
NdeII GATC 4 cut(s) 29, 92, 98, 111
NlaIII CATG 2 cut(s) 76, 82
NmeAIII GCCGAG 1 cut(s) 177
Ppu21I YACGTR 1 cut(s) 12
PsuI RGATCY 2 cut(s) 92, 111
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 4 cut(s) 29, 92, 98, 111
SduI GDGCHC 1 cut(s) 158
SetI ASST 4 cut(s) 14, 67, 71, 174
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SspMI CTAG 4 cut(s) 62, 66, 96, 162
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 138
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TspDTI ATGAA 3 cut(s) 17, 61, 95
XbaI TCTAGA 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 38
XspI CTAG 4 cut(s) 62, 66, 96, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.