RchiOBHm_Chr7g0189221

5-methyltetrahydropteroyltriglutamate-- homocysteine

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
8575416 .. 8576733
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16898

Sequence Viewer

Length: 396 bp
ATGAGCCAAGTCAATGACCAAATGGTTCGATATATACCAACTAGTACCCATTTCATTGTCCCCGAGTTGGGTCCTGACGTCAAATTCTTATATGCTTCTCATAAGGCTCTTAAGGAATACAAGGAGGCTAAAGTGTTCTTTTTGGTCCAGTGTCCTACTTGTTGCTGTCCAAAGTCCAAACCAGCAAAGGGTGTTGAAAAGACATTTTCGCTAAAGGAAAGTACCTCTTTGCTAGATTGGTTGATGGATCGAAGTAACATTTGGGCTAATGATCTCTCTACTTCCCTAAGTACATTGCAGGCTCTTGAAGGCATTGTTGGCAAAGACCACCTTGTCGTCTCTACCTCCTGCTCTCTTCTTCATACCCTGTTGATCTTGTTAATGAGACTAAGCTGA

Protein Analysis

131

Amino Acids

14.68

Weight (kDa)

8.28

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019859)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0328901 RchiOBHm_Chr7g0189221
rosa_laevigata RLG00000015289
rosa_rugosa Rorug05G0196500
rosa_samantha Rh5CG318400 Rh6DG027000 Rh7BG334000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AatII GACGTC 1 cut(s) 81
AclWI GGATC 1 cut(s) 255
AcsI RAATTY 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 3 cut(s) 46, 223, 292
AfiI CCNNNNNNNGG 3 cut(s) 67, 68, 188
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 197, 308
AhlI ACTAGT 1 cut(s) 41
AjuI GAANNNNNNNTTGG 4 cut(s) 244, 276, 300, 332
AluBI AGCT 1 cut(s) 393
AluI AGCT 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 343, 379
AlwI GGATC 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 62
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 71, 145
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 2 cut(s) 71, 145
BccI CCATC 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 343, 379
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 2 cut(s) 42, 233
BfrI CTTAAG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 71, 145
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 71, 145
BmiI GGNNCC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 68, 188
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 293
BseLI CCNNNNNNNGG 3 cut(s) 67, 68, 188
BseMI GCAATG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 3 cut(s) 67, 68, 188
BsmAI GTCTC 2 cut(s) 343, 379
BsmBI CGTCTC 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 62
Bsp143I GATC 3 cut(s) 247, 271, 372
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 255
BspTI CTTAAG 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 293
BsrI ACTGG 1 cut(s) 148
BssMI GATC 3 cut(s) 247, 271, 372
BssNI GRCGYC 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 78
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 287, 389
BstKTI GATC 3 cut(s) 250, 274, 375
BstMAI GTCTC 2 cut(s) 343, 379
BstMBI GATC 3 cut(s) 247, 271, 372
BstMWI GCNNNNNNNGC 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 71, 145
Csp6I GTAC 3 cut(s) 45, 222, 291
CviJI RGCY 6 cut(s) 6, 107, 128, 266, 302, 393
CviKI_1 RGCY 6 cut(s) 6, 107, 128, 266, 302, 393
CviQI GTAC 3 cut(s) 45, 222, 291
DdeI CTNAG 2 cut(s) 287, 389
DpnI GATC 3 cut(s) 249, 273, 374
DpnII GATC 3 cut(s) 247, 271, 372
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco47I GGWCC 2 cut(s) 71, 145
Eco88I CYCGRG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 343
FaiI YATR 6 cut(s) 33, 35, 91, 93, 102, 363
FalI AAGNNNNNCTT 4 cut(s) 211, 243, 315, 347
FaqI GGGAC 1 cut(s) 44
FspBI CTAG 2 cut(s) 42, 233
Hin1I GRCGYC 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 74, 305
HpyAV CCTTC 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 2 cut(s) 287, 389
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 78
Kzo9I GATC 3 cut(s) 247, 271, 372
LpnPI CCDG 6 cut(s) 87, 161, 195, 284, 361, 380
MaeI CTAG 2 cut(s) 42, 233
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 254
MalI GATC 3 cut(s) 249, 273, 374
MboI GATC 3 cut(s) 247, 271, 372
MboII GAAGA 2 cut(s) 347, 350
MluCI AATT 1 cut(s) 83
MnlI CCTC 3 cut(s) 118, 235, 355
MseI TTAA 2 cut(s) 111, 380
MspCI CTTAAG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 318
NdeII GATC 3 cut(s) 247, 271, 372
NlaIV GGNNCC 1 cut(s) 72
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 2 cut(s) 71, 145
PspPPI RGGWCCY 1 cut(s) 71
RsaI GTAC 3 cut(s) 46, 223, 292
RsaNI GTAC 3 cut(s) 45, 222, 291
SaqAI TTAA 2 cut(s) 111, 380
Sau3AI GATC 3 cut(s) 247, 271, 372
Sau96I GGNCC 2 cut(s) 71, 145
SetI ASST 5 cut(s) 81, 227, 333, 347, 395
SinI GGWCC 2 cut(s) 71, 145
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SpeI ACTAGT 1 cut(s) 41
Sse9I AATT 1 cut(s) 83
SspMI CTAG 2 cut(s) 42, 233
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 28, 250
TasI AATT 1 cut(s) 83
TatI WGTACW 1 cut(s) 290
Tru1I TTAA 2 cut(s) 111, 380
Tru9I TTAA 2 cut(s) 111, 380
TscAI CASTG 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 43, 350
TspRI CASTG 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 71, 145
XapI RAATTY 1 cut(s) 83
XspI CTAG 2 cut(s) 42, 233
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.