Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0019859

Physical Location & Seq

Genomic Coordinates Reverse (-)

34669914 .. 34671410

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG334000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGACAAGAAAGTGCATTTCATTAATTATTTATCTGTTCCTTGCAGACCACCTTGTCATCTCTACCTCCTGCTATCTTCTTCACACTGCTGTTGATCTTGTTAATGAGACTAAGTTGGACAATGAAATCAAATCGTGGCTCGCCTTTGCTGCCCAGAAAATTGTTGAAGCTAATGCTTTGGCAAAGGCATTGGCTAGTCACAAGAATGAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0003871 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008270 GO:0008652 GO:0008705 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0030054 GO:0031090 GO:0031967 GO:0031975 GO:0032259 GO:0042084 GO:0042085 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050667 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko01100 ko01110 ko01230 map00270 map00450 map01100 map01110 map01230

Pfam Domains

Protein Families

Meth_synt_1 Meth_synt_2

Protein Analysis

71

Amino Acids

8.0

Weight (kDa)

6.81

Isoelectric Point (pI)

10.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019859)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0328901 RchiOBHm_Chr7g0189221
rosa_laevigata	RLG00000015289
rosa_rugosa	Rorug05G0196500
rosa_samantha	Rh5CG318400 Rh6DG027000 Rh7BG334000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	149
AseI	ATTAAT	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	94
BssMI	GATC	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	141
CviJI	RGCY	3 cut(s)	139, 170, 194
CviKI_1	RGCY	3 cut(s)	139, 170, 194
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	15, 44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	2 cut(s)	82, 167
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	68, 71
MluCI	AATT	2 cut(s)	24, 159
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	2 cut(s)	23, 102
MslI	CAYNNNNRTG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	23, 102
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	94
SetI	ASST	3 cut(s)	54, 68, 172
SgeI	CNNG	9 cut(s)	18, 53, 65, 81, 110, 147, 152, 166, 207
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	24, 159
SspMI	CTAG	1 cut(s)	195
TasI	AATT	2 cut(s)	24, 159
Tru1I	TTAA	2 cut(s)	23, 102
Tru9I	TTAA	2 cut(s)	23, 102
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	9, 138
TspRI	CASTG	1 cut(s)	91
VspI	ATTAAT	1 cut(s)	23
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.