Rh5CG318400

5-methyltetrahydropteroyltriglutamate-- homocysteine

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
35351629 .. 35367655
16027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG318400.1

Sequence Viewer

Length: 231 bp
ATGAGCGAGGTTCACTGGAATTTGGTGAGGAAGCACTTCAATCTCTTCCAGGGAATATTGGCTCCCAGCTTCGTGGATACAGTCCCAGTCCTTGTTGGTCCAGTGTCCTACTTGTTGCTGTCCAAACCAACAAAGGGTGTTGAAAAGACATTTTCGTTAAAGGAAAGTACATCTTTGCTGGATTGGTTGATGGAAGGAACATTTGAGCTAATGATCTCTCTGCTTCCCTAA

Protein Analysis

76

Amino Acids

8.58

Weight (kDa)

6.03

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019859)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0328901 RchiOBHm_Chr7g0189221
rosa_laevigata RLG00000015289
rosa_rugosa Rorug05G0196500
rosa_samantha Rh5CG318400 Rh6DG027000 Rh7BG334000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 40, 143
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 2 cut(s) 69, 208
AluI AGCT 2 cut(s) 69, 208
ApoI RAATTY 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 98
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 3 cut(s) 20, 86, 101
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 134
BseNI ACTGG 3 cut(s) 20, 86, 101
BseYI CCCAGC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 63
BsrI ACTGG 3 cut(s) 20, 86, 101
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 50
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 73
BsuI GTATCC 1 cut(s) 70
BtsIMutI CAGTG 2 cut(s) 13, 108
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 168
CviJI RGCY 3 cut(s) 62, 69, 208
CviKI_1 RGCY 3 cut(s) 62, 69, 208
CviQI GTAC 1 cut(s) 168
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 48
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FaqI GGGAC 1 cut(s) 68
GsaI CCCAGC 1 cut(s) 69
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 82
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 6 cut(s) 35, 62, 79, 99, 114, 164
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 1 cut(s) 37
MluCI AATT 1 cut(s) 19
MnlI CCTC 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
NdeII GATC 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 98
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 158
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 50
SetI ASST 3 cut(s) 12, 71, 210
SinI GGWCC 1 cut(s) 98
Sse9I AATT 1 cut(s) 19
SspI AATATT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 82
TasI AATT 1 cut(s) 19
TatI WGTACW 1 cut(s) 167
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 2 cut(s) 20, 108
TspRI CASTG 2 cut(s) 20, 108
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.