RLG00000015289

5-methyltetrahydropteroyltriglutamate-- homocysteine

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
64073427 .. 64078878
5452 bp
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UTR
Exon/CDS
Intron
RLM00000015289

Sequence Viewer

Length: 519 bp
ATGATGCTAGTCCAGCCCGGCAAGAAGCTCTTGGCTCTCCCTGCTCGTGACTTACCAGTTGCTAAGGAGTTGGTACTTTTCTTGCCACAAGAACATGATAGGTTGATTATTTCTCCAGAAAATGAGAAGAAGAAGAAGATGGGAAGGCTTAGAGGCTCTAAGAACAAGGTTGGAGAGGTGAACTCTTTGGCGGATGAACTTACAAATGTAAGTGTAAGGAGCGTGCTTTACTTGGTCAATTCAAAGATTTATTGTCAACAGTTGCAACCATGCAGAAGGAACATTTGGGCTACTGATCTCTCTACTTCCCTAAGTACATTACTGGCTCTTGAAGGCATTGTTGGCAAAGACCACCTTATCGTCTCTACCTCCTGCTATCTTCTTCACACTGCTCTTGATCTTGTTAATGAGACTAAGCTGGACAATGAAATCAAGTCGTGGCTCGCCTTTGCTGCCCAGAAAATTGTTGAAGTTAATGCCTTGGCAAAGGCACTGGCTAGTCACAAGAATGAGGTATAG

Protein Analysis

173

Amino Acids

19.14

Weight (kDa)

9.13

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019859)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0328901 RchiOBHm_Chr7g0189221
rosa_laevigata RLG00000015289
rosa_rugosa Rorug05G0196500
rosa_samantha Rh5CG318400 Rh6DG027000 Rh7BG334000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AfaI GTAC 2 cut(s) 75, 316
AgsI TTSAA 3 cut(s) 243, 332, 470
AjuI GAANNNNNNNTTGG 4 cut(s) 268, 300, 324, 356
AluBI AGCT 2 cut(s) 28, 418
AluI AGCT 2 cut(s) 28, 418
Alw26I GTCTC 2 cut(s) 367, 404
ApeKI GCWGC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 190
BauI CACGAG 1 cut(s) 45
BbvI GCAGC 1 cut(s) 439
BccI CCATC 1 cut(s) 133
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 2 cut(s) 367, 404
BfaI CTAG 2 cut(s) 8, 498
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 480
Bse1I ACTGG 3 cut(s) 56, 327, 498
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 199
BseNI ACTGG 3 cut(s) 56, 327, 498
BseXI GCAGC 1 cut(s) 439
BsiSI CCGG 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 367, 404
BsmBI CGTCTC 1 cut(s) 367
Bsp143I GATC 2 cut(s) 295, 397
BspACI CCGC 1 cut(s) 191
BsrI ACTGG 3 cut(s) 56, 327, 498
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 2 cut(s) 295, 397
BssSI CACGAG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 224, 444
BstDEI CTNAG 5 cut(s) 63, 149, 159, 311, 414
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 2 cut(s) 298, 400
BstMAI GTCTC 2 cut(s) 367, 404
BstMBI GATC 2 cut(s) 295, 397
BstMWI GCNNNNNNNGC 4 cut(s) 13, 41, 342, 452
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 439
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 387, 491
Cac8I GCNNGC 2 cut(s) 224, 444
Csp6I GTAC 2 cut(s) 74, 315
CviAII CATG 2 cut(s) 95, 270
CviQI GTAC 2 cut(s) 74, 315
DdeI CTNAG 5 cut(s) 63, 149, 159, 311, 414
DpnI GATC 2 cut(s) 297, 399
DpnII GATC 2 cut(s) 295, 397
EciI GGCGGA 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 367
FaeI CATG 2 cut(s) 98, 273
FaiI YATR 3 cut(s) 96, 271, 517
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 339, 371
FatI CATG 2 cut(s) 94, 269
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 2 cut(s) 8, 498
GluI GCNGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 99
HapII CCGG 1 cut(s) 18
Hin1II CATG 2 cut(s) 98, 273
HincII GTYRAC 1 cut(s) 257
HindII GTYRAC 1 cut(s) 257
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 181, 257
Hpy188III TCNNGA 4 cut(s) 47, 116, 329, 395
Hpy8I GTNNAC 2 cut(s) 181, 257
HpyAV CCTTC 3 cut(s) 138, 270, 326
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4V TGCA 2 cut(s) 265, 273
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 41, 342, 452
HpyF3I CTNAG 5 cut(s) 63, 149, 159, 311, 414
Hsp92II CATG 2 cut(s) 98, 273
Kzo9I GATC 2 cut(s) 295, 397
LmnI GCTCC 1 cut(s) 219
Lsp1109I GCAGC 1 cut(s) 439
MaeI CTAG 2 cut(s) 8, 498
MaeIII GTNAC 2 cut(s) 47, 500
MalI GATC 2 cut(s) 297, 399
MboI GATC 2 cut(s) 295, 397
MboII GAAGA 6 cut(s) 139, 142, 145, 148, 371, 374
MluCI AATT 2 cut(s) 238, 462
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 4 cut(s) 146, 169, 379, 505
MseI TTAA 2 cut(s) 405, 474
MslI CAYNNNNRTG 1 cut(s) 507
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 13, 41, 342, 452
NciI CCSGG 1 cut(s) 18
NdeII GATC 2 cut(s) 295, 397
NlaIII CATG 2 cut(s) 98, 273
NmuCI GTSAC 2 cut(s) 47, 500
PkrI GCNGC 1 cut(s) 454
RsaI GTAC 2 cut(s) 75, 316
RsaNI GTAC 2 cut(s) 74, 315
RseI CAYNNNNRTG 1 cut(s) 507
SaqAI TTAA 2 cut(s) 405, 474
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 2 cut(s) 295, 397
ScrFI CCNGG 1 cut(s) 18
SetI ASST 8 cut(s) 30, 104, 171, 180, 357, 371, 420, 516
SmiMI CAYNNNNRTG 1 cut(s) 507
Sse9I AATT 2 cut(s) 238, 462
SsiI CCGC 1 cut(s) 191
SspMI CTAG 2 cut(s) 8, 498
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 261
TasI AATT 2 cut(s) 238, 462
TatI WGTACW 1 cut(s) 314
Tru1I TTAA 2 cut(s) 405, 474
Tru9I TTAA 2 cut(s) 405, 474
TscAI CASTG 2 cut(s) 394, 498
TseFI GTSAC 2 cut(s) 47, 500
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 2 cut(s) 47, 500
TspDTI ATGAA 2 cut(s) 210, 441
TspRI CASTG 2 cut(s) 394, 498
XspI CTAG 2 cut(s) 8, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.