Rh6DG027000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
2384955 .. 2385498
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG027000.1

Sequence Viewer

Length: 345 bp
ATGGAGCTTAGTGGTCAAAAACTTTCGGCGGAGATGATGCTAGTCCAGCACGGCAAGAAGCTCTTGGCTCTCCCTGCTCCTGACTTACCAGTTGCTAAGGAGTTGGTACTTTTCTTGCCACAAGAACATGATAGATTGATTATTTCTCCACAAAATGAGAAGAAGAAGAAGATCGGAAGGCTTAAAGGCTCTAAGAACAAGGTCAAACAGGAGGGAACTCTGTCTGTGAAATCTCGTCCAAAACTGAAAGGTAGGAAGCATTTTCTTAGGTTATTTGAGGAAGAAGATTCGGAGAACTTACTTGATGACAAGAAGATACTGCTTGATGAACATGTGATGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.05

Weight (kDa)

9.58

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019859)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0328901 RchiOBHm_Chr7g0189221
rosa_laevigata RLG00000015289
rosa_rugosa Rorug05G0196500
rosa_samantha Rh5CG318400 Rh6DG027000 Rh7BG334000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AfaI GTAC 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 331
AluBI AGCT 2 cut(s) 7, 61
AluI AGCT 2 cut(s) 7, 61
BceAI ACGGC 1 cut(s) 67
BfaI CTAG 1 cut(s) 41
BmsI GCATC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 89
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 89
BssMI GATC 1 cut(s) 171
BstDEI CTNAG 4 cut(s) 8, 96, 192, 266
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 46, 74
BstNSI RCATGY 1 cut(s) 335
Csp6I GTAC 1 cut(s) 107
CviAII CATG 2 cut(s) 128, 332
CviJI RGCY 5 cut(s) 7, 61, 68, 181, 189
CviKI_1 RGCY 5 cut(s) 7, 61, 68, 181, 189
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 4 cut(s) 8, 96, 192, 266
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
EciI GGCGGA 1 cut(s) 44
FaeI CATG 2 cut(s) 131, 335
FaiI YATR 2 cut(s) 129, 333
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 2 cut(s) 127, 331
FspBI CTAG 1 cut(s) 41
Hin1II CATG 2 cut(s) 131, 335
HinfI GANTC 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 176, 292
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 74
HpyF3I CTNAG 4 cut(s) 8, 96, 192, 266
Hsp92II CATG 2 cut(s) 131, 335
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 2 cut(s) 4, 82
LpnPI CCDG 5 cut(s) 59, 87, 93, 102, 194
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 41
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 7 cut(s) 172, 175, 178, 181, 293, 296, 325
MnlI CCTC 2 cut(s) 205, 271
MseI TTAA 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 46, 74
NdeII GATC 1 cut(s) 171
NlaIII CATG 2 cut(s) 131, 335
NspI RCATGY 1 cut(s) 335
PciI ACATGT 1 cut(s) 331
PfeI GAWTC 1 cut(s) 287
PscI ACATGT 1 cut(s) 331
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 183
Sau3AI GATC 1 cut(s) 171
SetI ASST 6 cut(s) 9, 63, 204, 253, 272, 344
SfaNI GCATC 1 cut(s) 27
SsiI CCGC 1 cut(s) 29
SspMI CTAG 1 cut(s) 41
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 342
XceI RCATGY 1 cut(s) 335
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.