RchiOBHm_Chr1g0343461

X-Pro dipeptidyl-peptidase (S15 family)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
35583576 .. 35585466
1891 bp
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UTR
Exon/CDS
Intron
PRQ56999

Sequence Viewer

Length: 387 bp
ATGCACTTTACCCTTCACTGCTCTTCTCAGATGACAACCTCCGAATCTCACACTCCAGCCGAGAAAGGTTTCAAAGCTGTCACTTTTGACATGAGAGGAGTTGGGAGGTCAACTGGGAAGGCTTCTCTTACTGGGTTTGTAGAAATCAAGGATGTGATTGCTGGCTGCAAATTGGTCTCTAAGAATTTGTCTGCTAATAGAATTTTGCTTGTGGGTTCTTCTGCAGGTATGTTGTTGAGAAAGTGTTCATGGTATTCAACGCGGAAACATTCCAAGAGAAAGACCCAGCAGTCTCTACACACTCACTGCGCCCATGACAAGAACAGGTTCTACAGACAACTGGGATTATTTTCATTGAAAAAGAAGATTGAAGATGCTGTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

10.13

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017736)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 289
Acc36I ACCTGC 1 cut(s) 215
AccII CGCG 1 cut(s) 262
AciI CCGC 1 cut(s) 262
AcsI RAATTY 2 cut(s) 184, 201
AgsI TTSAA 4 cut(s) 73, 258, 358, 371
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 2 cut(s) 181, 297
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 2 cut(s) 184, 201
Asp700I GAANNNNTTC 3 cut(s) 68, 244, 326
AspLEI GCGC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 181, 297
BfmI CTRYAG 2 cut(s) 222, 331
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
BmrI ACTGGG 3 cut(s) 123, 141, 350
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 3 cut(s) 123, 141, 350
BpmI CTGGAG 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 181
Bse1I ACTGG 3 cut(s) 118, 136, 345
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 3 cut(s) 118, 136, 345
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 152
BseYI CCCAGC 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 181, 297
Bso31I GGTCTC 1 cut(s) 181
BspACI CCGC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 262
BspMAI CTGCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 181
BsrI ACTGG 3 cut(s) 118, 136, 345
Bst6I CTCTTC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 27, 180
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 311
BstMAI GTCTC 2 cut(s) 181, 297
BstSFI CTRYAG 2 cut(s) 222, 331
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 2 cut(s) 16, 304
BtsIMutI CAGTG 2 cut(s) 16, 304
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 163
CfoI GCGC 1 cut(s) 311
CviAII CATG 3 cut(s) 91, 249, 314
CviJI RGCY 4 cut(s) 59, 77, 122, 165
CviKI_1 RGCY 4 cut(s) 59, 77, 122, 165
DdeI CTNAG 2 cut(s) 27, 180
DrdI GACNNNNNNGTC 1 cut(s) 289
DseDI GACNNNNNNGTC 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 181
FaeI CATG 3 cut(s) 94, 252, 317
FaiI YATR 4 cut(s) 92, 230, 250, 315
FatI CATG 3 cut(s) 90, 248, 313
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 166
GlaI GCGC 1 cut(s) 310
GluI GCNGC 1 cut(s) 166
GsaI CCCAGC 1 cut(s) 289
GsuI CTGGAG 1 cut(s) 39
HhaI GCGC 1 cut(s) 311
Hin1II CATG 3 cut(s) 94, 252, 317
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 3 cut(s) 30, 43, 386
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 2 cut(s) 23, 112
HpyCH4V TGCA 3 cut(s) 4, 168, 224
HpyF3I CTNAG 2 cut(s) 27, 180
Hsp92II CATG 3 cut(s) 94, 252, 317
HspAI GCGC 1 cut(s) 309
LguI GCTCTTC 1 cut(s) 28
LpnPI CCDG 8 cut(s) 69, 99, 117, 147, 210, 299, 310, 326
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 4 cut(s) 15, 210, 376, 383
MluCI AATT 3 cut(s) 170, 184, 201
MnlI CCTC 3 cut(s) 49, 89, 99
MroXI GAANNNNTTC 3 cut(s) 68, 244, 326
MvnI CGCG 1 cut(s) 262
NlaIII CATG 3 cut(s) 94, 252, 317
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 28
PdmI GAANNNNTTC 3 cut(s) 68, 244, 326
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 285
PsrI GAACNNNNNNTAC 2 cut(s) 314, 346
PstI CTGCAG 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 28
SatI GCNGC 1 cut(s) 166
SetI ASST 6 cut(s) 41, 70, 79, 110, 229, 329
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 2 cut(s) 222, 331
Sse9I AATT 3 cut(s) 170, 184, 201
SsiI CCGC 1 cut(s) 262
TasI AATT 3 cut(s) 170, 184, 201
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 2 cut(s) 23, 311
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 237, 342
TspRI CASTG 2 cut(s) 23, 311
XapI RAATTY 2 cut(s) 184, 201
XmnI GAANNNNTTC 3 cut(s) 68, 244, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.