Rorug05G0468500
MYB Family

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017736
Physical Location & Seq
Reverse (-)
64490930 .. 64492316
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0468500.1

Sequence Viewer

Length: 1083 bp
ATGGTTCCAGCAGGAGAACTTCAATTTGGCAATTTTCATCAAGTTTTACTGAACCTACGTAGCCAGGTTGAGAACATACTCAATGAGGAGCAGAAAGCTCTGTTAGAATCTCTAGAGCAAAAGGAAGACCTAAGAAAACAGCTTGAGAAAAGTGAAGCTCAAAACAAAGATCTTGAGAAAGAACTTGAGAAGAGTGAGGCTCAAAATAAAGAGCTTAACAATATAGTCTTAGACCAGCATACAGCCTTGTCAAGCTATGAAGATCAAATCAAGACTCTAAAGAAAGAACTTGATCAGGTTGGCTCTCATGAGTCAAGGAGTGAAATTATGACCAAAGAGCGCGATGGCTTGATTAGCAAGTACAACCAAGCATTGAAGCAGCGAGACTCAGCCTTAGAGAAGTTGAATACCATTGGAGCAGAGCTAAAGGAGGCGCAAAAAGACTTGGAACTGAGCAAGAATGTCTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTACTAAGGCGAAAAAGGCGTGGGAGACTGAGAGGATGGCACTGACAAGTACAATTTTGACGCACCAGGACTCCACTTGGAAATACAACCAAGCTTTAAAGGAGCAAGACTCGGTCTTGAGTGAGGTCCAAAAAGATTTGTCCAAGTCCCGGGTTGAGTTGGAATCAGGAAAGAAGGACCTCAACACAGCCATGAACGAGCTGAACATTTTGGGAGCAGAGCTAAATGAGGTTCGAAAGGACTTGTCCAAGTCCCGGGCTAAGTTGGAATTAGGCAAGAAGGTGTGGGAGGCTGAGAAGATGGAACTGACTAAGAAGCTTAACAAGTTTGGAACAGGAAACTCTGATCTCAGAGAGGAGTTGTATGACTTGGCCAAGATCCACGAGAAGCACATTAAAGAAAATGAGAATGCATATTGTACAGGGTACCTGACTGGGTGGTTCAGGGAGCCTCATGAATATATTTCCCTGCGAAGCTATGAGGCCAAGGAAGTTACTCTTCCGGTTCACAATCCTCTGGAGGCCACATCTTCACATTCTCATTCTCGTGCCACAATTAGACGTTTCGGAAGTGCTGGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

360

Amino Acids

41.31

Weight (kDa)

5.93

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017736)

Species Orthologous Gene IDs
malus_domestica MD03G1017500.v1.1
pyrus_communis pycom03g01510
rosa_chinensis RchiOBHm_Chr1g0343461
rosa_multiflora Rmu_sc0000543.1_g000036 Rmu_sc0012263.1_g000001
rosa_roxburghii Rroxscaffold_4G00324210
rosa_rugosa Rorug05G0468500
rosa_samantha Rh1CG073900 Rh2AG279900 Rh5BG274700
rosa_wichuraiana Rw0G003490 Rw3G022040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 924
AccB1I GGYRCC 1 cut(s) 924
AccII CGCG 1 cut(s) 342
AclWI GGATC 1 cut(s) 871
AcoI YGGCCR 1 cut(s) 870
AfaI GTAC 4 cut(s) 362, 550, 919, 926
AfiI CCNNNNNNNGG 2 cut(s) 648, 753
AgsI TTSAA 3 cut(s) 23, 376, 406
AjnI CCWGG 2 cut(s) 63, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
Alw26I GTCTC 2 cut(s) 378, 518
AlwI GGATC 1 cut(s) 871
Ama87I CYCGRG 2 cut(s) 648, 753
AoxI GGCC 3 cut(s) 870, 981, 1020
ApeKI GCWGC 1 cut(s) 379
Asp718I GGTACC 1 cut(s) 924
AspLEI GCGC 2 cut(s) 342, 436
AspS9I GGNCC 3 cut(s) 625, 676, 1076
AsuC2I CCSGG 4 cut(s) 649, 650, 754, 755
AsuII TTCGAA 1 cut(s) 733
AvaI CYCGRG 2 cut(s) 648, 753
AvaII GGWCC 3 cut(s) 625, 676, 1076
BalI TGGCCA 1 cut(s) 872
BanI GGYRCC 1 cut(s) 924
BauI CACGAG 2 cut(s) 881, 1044
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 391
BccI CCATC 3 cut(s) 338, 529, 793
BciT130I CCWGG 2 cut(s) 65, 566
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 4 cut(s) 649, 650, 754, 755
BcoDI GTCTC 2 cut(s) 378, 518
BfaI CTAG 1 cut(s) 113
BglII AGATCT 1 cut(s) 169
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 6 cut(s) 65, 566, 649, 650, 754, 755
Bme18I GGWCC 3 cut(s) 625, 676, 1076
BmeT110I CYCGRG 2 cut(s) 648, 753
BmgT120I GGNCC 3 cut(s) 625, 676, 1076
BmiI GGNNCC 3 cut(s) 6, 926, 948
BmrFI CCNGG 6 cut(s) 65, 566, 649, 650, 754, 755
BmrI ACTGGG 1 cut(s) 942
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 942
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 4 cut(s) 184, 216, 593, 625
BpmI CTGGAG 1 cut(s) 1037
Bpu14I TTCGAA 1 cut(s) 733
BpuEI CTTGAG 4 cut(s) 164, 194, 206, 637
BpuMI CCSGG 4 cut(s) 649, 650, 754, 755
BsaAI YACGTR 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 648, 753, 984
BsaWI WCCGGW 1 cut(s) 1000
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 648, 753
Bse1I ACTGG 1 cut(s) 937
BseBI CCWGG 2 cut(s) 65, 566
BseDI CCNNGG 3 cut(s) 648, 753, 984
BseGI GGATG 2 cut(s) 475, 540
BseLI CCNNNNNNNGG 2 cut(s) 648, 753
BseMII CTCAG 7 cut(s) 402, 443, 465, 483, 519, 783, 862
BseNI ACTGG 1 cut(s) 937
BseRI GAGGAG 2 cut(s) 101, 869
BseXI GCAGC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 3 cut(s) 872, 983, 1022
BshNI GGYRCC 1 cut(s) 924
BsiHKCI CYCGRG 2 cut(s) 648, 753
BsiSI CCGG 3 cut(s) 649, 754, 1001
BslFI GGGAC 2 cut(s) 631, 736
BslI CCNNNNNNNGG 2 cut(s) 648, 753
BsmAI GTCTC 2 cut(s) 378, 518
BsmFI GGGAC 2 cut(s) 631, 736
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 3 cut(s) 872, 983, 1022
BsoBI CYCGRG 2 cut(s) 648, 753
Bsp119I TTCGAA 1 cut(s) 733
Bsp1407I TGTACA 1 cut(s) 917
Bsp143I GATC 5 cut(s) 169, 262, 292, 844, 876
BspANI GGCC 3 cut(s) 872, 983, 1022
BspCNI CTCAG 7 cut(s) 401, 444, 466, 484, 520, 784, 861
BspFNI CGCG 1 cut(s) 342
BspHI TCATGA 2 cut(s) 307, 952
BspLI GGNNCC 3 cut(s) 6, 926, 948
BspPI GGATC 1 cut(s) 871
BspT104I TTCGAA 1 cut(s) 733
BspT107I GGYRCC 1 cut(s) 924
BsrGI TGTACA 1 cut(s) 917
BsrI ACTGG 1 cut(s) 937
BssECI CCNNGG 3 cut(s) 648, 753, 984
BssMI GATC 5 cut(s) 169, 262, 292, 844, 876
BssSI CACGAG 2 cut(s) 881, 1044
BssT1I CCWWGG 1 cut(s) 984
Bst2BI CACGAG 2 cut(s) 881, 1044
Bst2UI CCWGG 2 cut(s) 65, 566
Bst6I CTCTTC 2 cut(s) 185, 1002
BstAUI TGTACA 1 cut(s) 917
BstBAI YACGTR 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 733
BstF5I GGATG 2 cut(s) 475, 540
BstFNI CGCG 1 cut(s) 342
BstHHI GCGC 2 cut(s) 342, 436
BstKTI GATC 5 cut(s) 172, 265, 295, 847, 879
BstMAI GTCTC 2 cut(s) 378, 518
BstMBI GATC 5 cut(s) 169, 262, 292, 844, 876
BstMWI GCNNNNNNNGC 2 cut(s) 354, 515
BstNI CCWGG 2 cut(s) 65, 566
BstSCI CCNGG 6 cut(s) 63, 564, 647, 648, 752, 753
BstSNI TACGTA 1 cut(s) 59
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 169, 876
BstYI RGATCY 2 cut(s) 169, 876
BsuRI GGCC 3 cut(s) 872, 983, 1022
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 2 cut(s) 475, 540
BtsIMutI CAGTG 1 cut(s) 539
CciI TCATGA 2 cut(s) 307, 952
CfoI GCGC 2 cut(s) 342, 436
Cfr13I GGNCC 3 cut(s) 625, 676, 1076
Cfr9I CCCGGG 2 cut(s) 648, 753
CseI GACGC 1 cut(s) 568
Csp6I GTAC 4 cut(s) 361, 549, 918, 925
CviAII CATG 3 cut(s) 308, 691, 953
CviQI GTAC 4 cut(s) 361, 549, 918, 925
DpnI GATC 5 cut(s) 171, 264, 294, 846, 878
DpnII GATC 5 cut(s) 169, 262, 292, 844, 876
DraI TTTAAA 1 cut(s) 597
EaeI YGGCCR 1 cut(s) 870
Eam1104I CTCTTC 2 cut(s) 185, 1002
EarI CTCTTC 2 cut(s) 185, 1002
Eco105I TACGTA 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 984
Eco47I GGWCC 3 cut(s) 625, 676, 1076
Eco88I CYCGRG 2 cut(s) 648, 753
EcoO109I RGGNCCY 1 cut(s) 676
EcoRII CCWGG 2 cut(s) 63, 564
EcoT14I CCWWGG 1 cut(s) 984
EcoT22I ATGCAT 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 984
FaeI CATG 3 cut(s) 311, 694, 956
FalI AAGNNNNNCTT 2 cut(s) 981, 1013
FaqI GGGAC 2 cut(s) 631, 736
FatI CATG 3 cut(s) 307, 690, 952
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 2 cut(s) 482, 547
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 113
GlaI GCGC 2 cut(s) 341, 435
GluI GCNGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 1037
HaeIII GGCC 3 cut(s) 872, 983, 1022
HapII CCGG 3 cut(s) 649, 754, 1001
HgaI GACGC 1 cut(s) 568
HhaI GCGC 2 cut(s) 342, 436
Hin1II CATG 3 cut(s) 311, 694, 956
Hin6I GCGC 2 cut(s) 340, 434
HinP1I GCGC 2 cut(s) 340, 434
HindIII AAGCTT 2 cut(s) 591, 815
HinfI GANTC 7 cut(s) 107, 274, 311, 386, 569, 608, 662
HpaII CCGG 3 cut(s) 649, 754, 1001
Hpy166II GTNNAC 1 cut(s) 1006
Hpy188I TCNGA 3 cut(s) 844, 851, 1067
Hpy188III TCNNGA 8 cut(s) 113, 173, 271, 308, 616, 666, 953, 1016
Hpy8I GTNNAC 1 cut(s) 1006
HpyAV CCTTC 2 cut(s) 667, 772
HpyCH4IV ACGT 2 cut(s) 58, 1060
HpyCH4V TGCA 1 cut(s) 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 515
HpySE526I ACGT 2 cut(s) 58, 1060
Hsp92II CATG 3 cut(s) 311, 694, 956
HspAI GCGC 2 cut(s) 340, 434
KpnI GGTACC 1 cut(s) 928
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 5 cut(s) 169, 262, 292, 844, 876
LmnI GCTCC 5 cut(s) 88, 416, 601, 713, 946
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 113
MaeII ACGT 2 cut(s) 58, 1060
MaeIII GTNAC 1 cut(s) 991
MalI GATC 5 cut(s) 171, 264, 294, 846, 878
MboI GATC 5 cut(s) 169, 262, 292, 844, 876
MboII GAAGA 6 cut(s) 137, 202, 272, 808, 989, 1020
MflI RGATCY 2 cut(s) 169, 876
MlsI TGGCCA 1 cut(s) 872
MluCI AATT 6 cut(s) 23, 31, 324, 552, 767, 1053
MluNI TGGCCA 1 cut(s) 872
MlyI GAGTC 5 cut(s) 268, 320, 380, 563, 602
MmeI TCCRAC 2 cut(s) 639, 744
Mox20I TGGCCA 1 cut(s) 872
Mph1103I ATGCAT 1 cut(s) 913
MscI TGGCCA 1 cut(s) 872
MseI TTAA 4 cut(s) 216, 596, 819, 894
MslI CAYNNNNRTG 2 cut(s) 689, 1044
Msp20I TGGCCA 1 cut(s) 872
MspI CCGG 3 cut(s) 649, 754, 1001
MspR9I CCNGG 6 cut(s) 65, 566, 649, 650, 754, 755
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 2 cut(s) 65, 566
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 354, 515
NciI CCSGG 4 cut(s) 649, 650, 754, 755
NdeII GATC 5 cut(s) 169, 262, 292, 844, 876
NlaIII CATG 3 cut(s) 311, 694, 956
NlaIV GGNNCC 3 cut(s) 6, 926, 948
NsiI ATGCAT 1 cut(s) 913
NspV TTCGAA 1 cut(s) 733
PagI TCATGA 2 cut(s) 307, 952
PctI GAATGC 1 cut(s) 913
PfeI GAWTC 2 cut(s) 107, 662
PflFI GACNNNGTC 1 cut(s) 611
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 5 cut(s) 268, 319, 380, 563, 602
PpsI GAGTC 5 cut(s) 268, 319, 380, 563, 602
Ppu21I YACGTR 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 2 cut(s) 63, 564
PspGI CCWGG 2 cut(s) 63, 564
PspN4I GGNNCC 3 cut(s) 6, 926, 948
PspPI GGNCC 3 cut(s) 625, 676, 1076
PspPPI RGGWCCY 1 cut(s) 676
PsuI RGATCY 2 cut(s) 169, 876
PsyI GACNNNGTC 1 cut(s) 611
RsaI GTAC 4 cut(s) 362, 550, 919, 926
RsaNI GTAC 4 cut(s) 361, 549, 918, 925
RseI CAYNNNNRTG 2 cut(s) 689, 1044
SaqAI TTAA 4 cut(s) 216, 596, 819, 894
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 5 cut(s) 169, 262, 292, 844, 876
Sau96I GGNCC 3 cut(s) 625, 676, 1076
SchI GAGTC 5 cut(s) 268, 320, 380, 563, 602
ScrFI CCNGG 6 cut(s) 65, 566, 649, 650, 754, 755
SfaNI GCATC 1 cut(s) 460
SfuI TTCGAA 1 cut(s) 733
SinI GGWCC 3 cut(s) 625, 676, 1076
SmaI CCCGGG 2 cut(s) 650, 755
SmiMI CAYNNNNRTG 2 cut(s) 689, 1044
SmlI CTYRAG 4 cut(s) 143, 173, 185, 616
SmoI CTYRAG 4 cut(s) 143, 173, 185, 616
SnaBI TACGTA 1 cut(s) 59
Sse9I AATT 6 cut(s) 23, 31, 324, 552, 767, 1053
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 6 cut(s) 63, 564, 647, 648, 752, 753
StyI CCWWGG 1 cut(s) 984
TaiI ACGT 2 cut(s) 61, 1063
TaqI TCGA 1 cut(s) 733
TaqII GACCGA 1 cut(s) 601
TasI AATT 6 cut(s) 23, 31, 324, 552, 767, 1053
TatI WGTACW 3 cut(s) 360, 548, 917
TfiI GAWTC 2 cut(s) 107, 662
Tru1I TTAA 4 cut(s) 216, 596, 819, 894
Tru9I TTAA 4 cut(s) 216, 596, 819, 894
TscAI CASTG 1 cut(s) 546
TseI GCWGC 1 cut(s) 379
TspDTI ATGAA 4 cut(s) 26, 273, 707, 969
TspMI CCCGGG 2 cut(s) 648, 753
TspRI CASTG 1 cut(s) 546
Tth111I GACNNNGTC 1 cut(s) 611
VpaK11BI GGWCC 3 cut(s) 625, 676, 1076
XbaI TCTAGA 1 cut(s) 112
XmaI CCCGGG 2 cut(s) 648, 753
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.