Rroxscaffold_4G00324210

X-Pro dipeptidyl-peptidase (S15 family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017736
Physical Location & Seq
Reverse (-)
55481240 .. 55484286
3047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324210.1

Sequence Viewer

Length: 273 bp
ATGCACTTGACTCTTCACTGCTCTTCTCAAATGACAAGCTCCGAATTTCGCCAATCTCACACTCTAGCCGAGAAAGGTTTCAAAGCTGTCGCTTTTGACATGAGAGGAGTTGGGAGGTCAACTGGGAAGGCTTCTCTTACTGGGTTTGCAGAAATCAAGGATGTGATTGCTGTCTACAAATTGGTCTCTAAGAATTTGTCTGCTAATAGAATTTTGCTTGTGGGTTCTTCTGCAGGCCTACTTATCTCTTCCCCGAGGGCATTGCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

90

Amino Acids

9.62

Weight (kDa)

10.13

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 20 - 83 7.3e-07 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017736)

Species Orthologous Gene IDs
malus_domestica MD03G1017500.v1.1
pyrus_communis pycom03g01510
rosa_chinensis RchiOBHm_Chr1g0343461
rosa_multiflora Rmu_sc0000543.1_g000036 Rmu_sc0012263.1_g000001
rosa_roxburghii Rroxscaffold_4G00324210
rosa_rugosa Rorug05G0468500
rosa_samantha Rh1CG073900 Rh2AG279900 Rh5BG274700
rosa_wichuraiana Rw0G003490 Rw3G022040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AcsI RAATTY 3 cut(s) 44, 193, 210
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 2 cut(s) 39, 86
AluI AGCT 2 cut(s) 39, 86
Alw26I GTCTC 1 cut(s) 190
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 3 cut(s) 44, 193, 210
Asp700I GAANNNNTTC 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 253
BcgI CGANNNNNNTGC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 231
BmeT110I CYCGRG 1 cut(s) 253
BmrI ACTGGG 2 cut(s) 132, 150
BmuI ACTGGG 2 cut(s) 132, 150
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 127, 145
Bse3DI GCAATG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 260
BseNI ACTGG 2 cut(s) 127, 145
BseRI GAGGAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 1 cut(s) 253
BspANI GGCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 235
BspQI GCTCTTC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 260
BsrI ACTGG 2 cut(s) 127, 145
BssECI CCNNGG 1 cut(s) 254
Bst6I CTCTTC 3 cut(s) 18, 28, 253
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 231
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 235
CviAII CATG 1 cut(s) 100
CviJI RGCY 5 cut(s) 39, 68, 86, 131, 237
CviKI_1 RGCY 5 cut(s) 39, 68, 86, 131, 237
DdeI CTNAG 1 cut(s) 189
Eam1104I CTCTTC 3 cut(s) 18, 28, 253
EarI CTCTTC 3 cut(s) 18, 28, 253
Eco147I AGGCCT 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 253
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FatI CATG 1 cut(s) 99
FblI GTMKAC 1 cut(s) 174
FokI GGATG 1 cut(s) 173
FspBI CTAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 120, 175
Hpy188I TCNGA 1 cut(s) 43
Hpy8I GTNNAC 2 cut(s) 120, 175
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 4, 149, 233
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 108, 126, 219
MaeI CTAG 1 cut(s) 65
MboII GAAGA 4 cut(s) 5, 15, 219, 240
MluCI AATT 4 cut(s) 44, 179, 193, 210
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 3 cut(s) 98, 108, 249
MroXI GAANNNNTTC 1 cut(s) 77
NlaIII CATG 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 94
PceI AGGCCT 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 77
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 28
SchI GAGTC 1 cut(s) 4
SetI ASST 4 cut(s) 41, 79, 88, 119
SfcI CTRYAG 1 cut(s) 231
Sse9I AATT 4 cut(s) 44, 179, 193, 210
SseBI AGGCCT 1 cut(s) 237
SspMI CTAG 1 cut(s) 65
StuI AGGCCT 1 cut(s) 237
TasI AATT 4 cut(s) 44, 179, 193, 210
TscAI CASTG 1 cut(s) 23
TspRI CASTG 1 cut(s) 23
XapI RAATTY 3 cut(s) 44, 193, 210
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.