RchiOBHm_Chr1g0344731

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019861
Physical Location & Seq
Reverse (-)
37050617 .. 37050999
383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57113

Sequence Viewer

Length: 324 bp
ATGTCATCGGTGGTGATACCGGGTCGAGTCTCGGGTCGCTTCTGCTGGAGGCTGGAGCGTCTTTCTGTGGACTATGGGAAAACGCCCGAGCTCGGATTCACTGTGTATCTTTCTCCTCAGGTTTCTACATCTGTTGTAGAGCCCTGTAACAGTGTCCTCTCCACTCATTCTCTGCTTGAGCACACCGATGCGTCTGTTTTGCTCGATAATGAGGCCATCTACGACATCTGCTACCGATCTCTGGACATTGAGCGTCCCACTTACACCAATCTCAATCGCCTCATCTCTCAGTTATTATATGATGGATTTGAATCTGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

107

Amino Acids

12.07

Weight (kDa)

4.8

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 18 - 77 2.6e-08 Tubulin/FtsZ family, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019861)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0344731 RchiOBHm_Chr2g0112001 RchiOBHm_Chr2g0153431
rosa_laevigata RLG00000012506 RLG00000021609 RLG00000035396
rosa_multiflora Rmu_sc0006888.1_g000019

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 92, 241
AgsI TTSAA 1 cut(s) 311
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw21I GWGCWC 2 cut(s) 93, 183
Alw26I GTCTC 1 cut(s) 34
Ama87I CYCGRG 2 cut(s) 31, 86
AoxI GGCC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 2 cut(s) 31, 86
AxyI CCTNAGG 1 cut(s) 117
BanII GRGCYC 2 cut(s) 93, 144
Bbv12I GWGCWC 2 cut(s) 93, 183
BccI CCATC 2 cut(s) 224, 296
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 21
BmeT110I CYCGRG 2 cut(s) 31, 86
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 2 cut(s) 67, 74
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 310
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 241
Bse21I CCTNAGG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 92, 241
BseMII CTCAG 2 cut(s) 131, 302
BseRI GAGGAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 215
BsiHKAI GWGCWC 2 cut(s) 93, 183
BsiHKCI CYCGRG 2 cut(s) 31, 86
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 92, 241
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 215
BsoBI CYCGRG 2 cut(s) 31, 86
Bsp1286I GDGCHC 3 cut(s) 93, 144, 183
Bsp143I GATC 1 cut(s) 236
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 130, 301
BssMI GATC 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 103, 152
BstDEI CTNAG 2 cut(s) 117, 288
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 1 cut(s) 215
BtsIMutI CAGTG 2 cut(s) 99, 157
CseI GACGC 3 cut(s) 47, 180, 242
CviJI RGCY 4 cut(s) 52, 91, 142, 215
CviKI_1 RGCY 4 cut(s) 52, 91, 142, 215
DdeI CTNAG 2 cut(s) 117, 288
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 93, 144
Eco53kI GAGCTC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 117
Eco88I CYCGRG 2 cut(s) 31, 86
EcoICRI GAGCTC 1 cut(s) 91
EcoT38I GRGCYC 2 cut(s) 93, 144
FaiI YATR 3 cut(s) 75, 298, 300
FaqI GGGAC 1 cut(s) 240
FriOI GRGCYC 2 cut(s) 93, 144
GsuI CTGGAG 2 cut(s) 67, 74
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 20
HgaI GACGC 3 cut(s) 47, 180, 242
HinfI GANTC 3 cut(s) 27, 96, 311
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 103, 152
HpyF3I CTNAG 2 cut(s) 117, 288
Kzo9I GATC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 7 cut(s) 31, 33, 38, 104, 157, 227, 300
LweI GCATC 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MhlI GDGCHC 3 cut(s) 93, 144, 183
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 5 cut(s) 42, 126, 167, 205, 290
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 21
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 96, 311
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 236
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 3 cut(s) 93, 144, 183
SetI ASST 2 cut(s) 93, 123
SfaNI GCATC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 103, 152
TaqI TCGA 2 cut(s) 25, 204
TfiI GAWTC 2 cut(s) 96, 311
TscAI CASTG 2 cut(s) 106, 157
TspRI CASTG 2 cut(s) 106, 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.